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Minor change to EAGLE_ICs/*/run.sh

Josh Borrow requested to merge EAGLE-run.sh-update into master

This updates the run.sh with more useful information and the inclusion of the time-step limiter. I have also attempted to document the parameters, and include downloads for the cooling and yieldtables.

Hopefully this should help people stop seeing the run-time flags as 'magic' and instead actually make them consider what each one does...

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