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Small GEAR merge fixes

Merged Small GEAR merge fixes
gear_cleanup into master
Merged Matthieu Schaller requested to merge gear_cleanup into master
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examples/parameter_example.yml
+ 24
− 17
@@ -292,6 +292,7 @@ SineWavePotential:
timestep_limit: 1. # Time-step dimensionless pre-factor.
growth_time: 0. # (Optional) Time for the potential to grow to its final size.
# Parameters related to entropy floors ----------------------------------------------
EAGLEEntropyFloor:
@@ -303,12 +304,14 @@ EAGLEEntropyFloor:
Cool_over_density_threshold: 10. # Overdensity above which the EAGLE Cool limiter entropy floor can kick in.
Cool_temperature_norm_K: 8000 # Temperature of the EAGLE Cool limiter entropy floor at the density threshold expressed in Kelvin.
Cool_gamma_effective: 1. # Slope the of the EAGLE Cool limiter entropy floor
# Parameters related to pressure floors ----------------------------------------------
GEARPressureFloor:
jeans_factor: 10. # Number of particles required to suppose a resolved clump and avoid the pressure floor.
# Parameters related to cooling function ----------------------------------------------
# Constant du/dt cooling function
@@ -326,6 +329,7 @@ LambdaCooling:
EAGLECooling:
dir_name: ./coolingtables/ # Location of the Wiersma+08 cooling tables
H_reion_z: 8.5 # Redshift of Hydrogen re-ionization
H_reion_eV_p_H: 2.0 # Energy inject by Hydrogen re-ionization in electron-volt per Hydrogen atom
He_reion_z_centre: 3.5 # Redshift of the centre of the Helium re-ionization Gaussian
He_reion_z_sigma: 0.5 # Spread in redshift of the Helium re-ionization Gaussian
He_reion_eV_p_H: 2.0 # Energy inject by Helium re-ionization in electron-volt per Hydrogen atom
@@ -336,16 +340,17 @@ EAGLECooling:
# Cooling with Grackle 3.0
GrackleCooling:
cloudy_table: CloudyData_UVB=HM2012.h5 # Name of the Cloudy Table (available on the grackle bitbucket repository)
with_UV_background: 1 # Enable or not the UV background
redshift: 0 # Redshift to use (-1 means time based redshift)
with_metal_cooling: 1 # Enable or not the metal cooling
provide_volumetric_heating_rates: 0 # (optional) User provide volumetric heating rates
provide_specific_heating_rates: 0 # (optional) User provide specific heating rates
with_UV_background: 1 # Enable or not the UV background
redshift: 0 # Redshift to use (-1 means time based redshift)
with_metal_cooling: 1 # Enable or not the metal cooling
provide_volumetric_heating_rates: 0 # (optional) User provide volumetric heating rates
provide_specific_heating_rates: 0 # (optional) User provide specific heating rates
max_steps: 10000 # (optional) Max number of step when computing the initial composition
convergence_limit: 1e-2 # (optional) Convergence threshold (relative) for initial composition
thermal_time_myr: 5 # (optional) Time (in Myr) for adiabatic cooling after a feedback event.
self_shielding_method: -1 # (optional) Grackle (1->3 for Grackle's ones, 0 for none and -1 for GEAR)
self_shielding_threshold_atom_per_cm3: 0.007 # Required only with GEAR's self shielding. Density threshold of the self shielding
self_shielding_method: -1 # (optional) Grackle (1->3 for Grackle's ones, 0 for none and -1 for GEAR)
self_shielding_threshold_atom_per_cm3: 0.007 # Required only with GEAR's self shielding. Density threshold of the self shielding
# Parameters related to chemistry models -----------------------------------------------
@@ -365,16 +370,11 @@ EAGLEChemistry:
# GEAR chemistry model (Revaz and Jablonka 2018)
GEARChemistry:
initial_metallicity: 1 # Initial metallicity of the gas (mass fraction)
scale_initial_metallicity: 1 # Should we scale the initial metallicity with the solar one?
scale_initial_metallicity: 1 # Should we scale the initial metallicity with the solar one?
# Parameters related to star formation models -----------------------------------------------
# GEAR star formation model (Revaz and Jablonka 2018)
GEARStarFormation:
star_formation_efficiency: 0.01 # star formation efficiency (c_*)
maximal_temperature: 3e4 # Upper limit to the temperature of a star forming particle
# EAGLE star formation model (Schaye and Dalla Vecchia 2008)
EAGLEStarFormation:
EOS_density_norm_H_p_cm3: 0.1 # Physical density used for the normalisation of the EOS assumed for the star-forming gas in Hydrogen atoms per cm^3.
@@ -392,7 +392,13 @@ EAGLEStarFormation:
threshold_Z0: 0.002 # Reference metallicity (metal mass fraction) for the metal-dependant threshold for star formation.
threshold_slope: -0.64 # Slope of the metal-dependant star formation threshold
threshold_max_density_H_p_cm3: 10.0 # Maximal density of the metal-dependant density threshold for star formation in Hydrogen atoms per cm^3.
# GEAR star formation model (Revaz and Jablonka 2018)
GEARStarFormation:
star_formation_efficiency: 0.01 # star formation efficiency (c_*)
maximal_temperature: 3e4 # Upper limit to the temperature of a star forming particle
# Parameters related to feedback models -----------------------------------------------
# EAGLE feedback model
@@ -438,9 +444,10 @@ EAGLEFeedback:
# GEAR feedback model
GEARFeedback:
supernovae_energy_erg: 0.1e51 # Energy released by a single supernovae.
supernovae_energy_erg: 0.1e51 # Energy released by a single supernovae.
yields_table: chemistry-AGB+OMgSFeZnSrYBaEu-16072013.h5 # Table containing the yields.
discrete_yields: 0 # Should we use discrete yields or the IMF integrated one?
discrete_yields: 0 # Should we use discrete yields or the IMF integrated one?
# Parameters related to AGN models -----------------------------------------------