Update the run.sh scripts for their new locations.

examples/Cooling/CoolingBox/run.sh

@@ -21,7 +21,7 @@ then
 fi
 
 # Run SWIFT
-../swift --cosmology --hydro --cooling --threads=4 -n 1000 coolingBox.yml
+../../swift --cosmology --hydro --cooling --threads=4 -n 1000 coolingBox.yml
 
 # Check energy conservation and cooling rate
 python energy_plot.py

examples/Cooling/CoolingHalo/run.sh

@@ -4,7 +4,7 @@
 echo "Generating initial conditions for the isothermal potential box example..."
 python makeIC.py 10000 
 
-../swift --external-gravity --hydro --cooling --threads=16 cooling_halo.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --cooling --threads=16 cooling_halo.yml 2>&1 | tee output.log
 
 python radial_profile.py 2. 200 100
 

examples/Cooling/CoolingHaloWithSpin/run.sh

@@ -5,7 +5,7 @@ echo "Generating initial conditions for the isothermal potential box example..."
 python makeIC.py 10000 
 
 # Run SWIFT with external potential, SPH and cooling
-../swift --external-gravity --hydro --cooling --threads=1 cooling_halo.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --cooling --threads=1 cooling_halo.yml 2>&1 | tee output.log
 
 # python radial_profile.py 10
 

examples/Cosmology/ComovingSodShock_1D/run.sh

@@ -8,7 +8,7 @@ then
 fi
 
 # Run SWIFT
-../swift --cosmology --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
 
 # Plot the result
 python plotSolution.py 1

examples/Cosmology/ComovingSodShock_2D/run.sh

@@ -13,6 +13,6 @@ then
 fi
 
 # Run SWIFT
-../swift --cosmology --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
 
 python plotSolution.py 1

examples/Cosmology/ComovingSodShock_3D/run.sh

@@ -13,6 +13,6 @@ then
 fi
 
 # Run SWIFT
-../swift --cosmology --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
 
 python plotSolution.py 1

examples/Cosmology/ConstantCosmoVolume/run.sh

@@ -13,7 +13,7 @@ then
 fi
 
 # Run SWIFT
-../swift --hydro --cosmology --self-gravity --threads=8 constant_volume.yml 2>&1 | tee output.log
+../../swift --hydro --cosmology --self-gravity --threads=8 constant_volume.yml 2>&1 | tee output.log
 
 # Plot the result
 python plotSolution.py $i

examples/Cosmology/ZeldovichPancake_3D/run.sh

@@ -8,7 +8,7 @@ then
 fi
 
 # Run SWIFT
-../swift --hydro --cosmology --self-gravity --threads=8 zeldovichPancake.yml 2>&1 | tee output.log
+../../swift --hydro --cosmology --self-gravity --threads=8 zeldovichPancake.yml 2>&1 | tee output.log
 
 # Plot the result
 for i in {0..119}

examples/EAGLE_DMO_low_z/EAGLE_DMO_100/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --self-gravity --threads=16 eagle_100.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=16 eagle_100.yml 2>&1 | tee output.log
 

examples/EAGLE_DMO_low_z/EAGLE_DMO_12/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --self-gravity --threads=16 eagle_12.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=16 eagle_12.yml 2>&1 | tee output.log
 

examples/EAGLE_DMO_low_z/EAGLE_DMO_25/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --self-gravity --threads=16 eagle_25.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=16 eagle_25.yml 2>&1 | tee output.log
 

examples/EAGLE_DMO_low_z/EAGLE_DMO_50/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --self-gravity --threads=16 eagle_50.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=16 eagle_50.yml 2>&1 | tee output.log
 

examples/EAGLE_low_z/EAGLE_100/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_100.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_100.yml 2>&1 | tee output.log
 

examples/EAGLE_low_z/EAGLE_12/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_12.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_12.yml 2>&1 | tee output.log
 

examples/EAGLE_low_z/EAGLE_25/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_25.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_25.yml 2>&1 | tee output.log
 

examples/EAGLE_low_z/EAGLE_50/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_50.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_50.yml 2>&1 | tee output.log
 

examples/EAGLE_low_z/EAGLE_6/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_6.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_6.yml 2>&1 | tee output.log
 

examples/GEAR/AgoraDisk/run.sh

@@ -38,7 +38,7 @@ cp $sim.hdf5 agora_disk.hdf5
 python3 changeType.py agora_disk.hdf5
 
 # Run SWIFT
-#../swift $flag --hydro --self-gravity --threads=4 agora_disk.yml 2>&1 | tee output.log
+#../../swift $flag --hydro --self-gravity --threads=4 agora_disk.yml 2>&1 | tee output.log
 
 
 echo "Changing smoothing length to be Gadget compatible"

examples/GEAR/DwarfGalaxy/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --feedback --self-gravity --hydro --stars --threads=8 $@ dwarf_galaxy.yml 2>&1 | tee output.log
+../../swift --feedback --self-gravity --hydro --stars --threads=8 $@ dwarf_galaxy.yml 2>&1 | tee output.log
 

examples/GEAR/ZoomIn/run.sh

@@ -7,5 +7,5 @@ then
     ./getIC.sh
 fi
 
-../swift --feedback --cosmology --self-gravity --hydro --stars --threads=8 zoom_in.yml 2>&1 | tee output.log
+../../swift --feedback --cosmology --self-gravity --hydro --stars --threads=8 zoom_in.yml 2>&1 | tee output.log