From dc672f8f8742578072b5acb77d9d5aaed95715bd Mon Sep 17 00:00:00 2001
From: Matthieu Schaller <schaller@strw.leidenuniv.nl>
Date: Tue, 12 Feb 2019 21:59:48 +0100
Subject: [PATCH] Update the run.sh scripts for their new locations.
---
examples/Cooling/CoolingBox/run.sh | 2 +-
examples/Cooling/CoolingHalo/run.sh | 2 +-
examples/Cooling/CoolingHaloWithSpin/run.sh | 2 +-
examples/Cosmology/ComovingSodShock_1D/run.sh | 2 +-
examples/Cosmology/ComovingSodShock_2D/run.sh | 2 +-
examples/Cosmology/ComovingSodShock_3D/run.sh | 2 +-
examples/Cosmology/ConstantCosmoVolume/run.sh | 2 +-
examples/Cosmology/ZeldovichPancake_3D/run.sh | 2 +-
examples/EAGLE_DMO_low_z/EAGLE_DMO_100/run.sh | 2 +-
examples/EAGLE_DMO_low_z/EAGLE_DMO_12/run.sh | 2 +-
examples/EAGLE_DMO_low_z/EAGLE_DMO_25/run.sh | 2 +-
examples/EAGLE_DMO_low_z/EAGLE_DMO_50/run.sh | 2 +-
examples/EAGLE_low_z/EAGLE_100/run.sh | 2 +-
examples/EAGLE_low_z/EAGLE_12/run.sh | 2 +-
examples/EAGLE_low_z/EAGLE_25/run.sh | 2 +-
examples/EAGLE_low_z/EAGLE_50/run.sh | 2 +-
examples/EAGLE_low_z/EAGLE_6/run.sh | 2 +-
examples/GEAR/AgoraDisk/run.sh | 2 +-
examples/GEAR/DwarfGalaxy/run.sh | 2 +-
examples/GEAR/ZoomIn/run.sh | 2 +-
examples/GiantImpacts/GiantImpact/run.sh | 2 +-
examples/GravityTests/DiscPatch/GravityOnly/run.sh | 2 +-
examples/GravityTests/DiscPatch/HydroStatic/run.sh | 2 +-
examples/GravityTests/DiscPatch/HydroStatic_1D/run.sh | 2 +-
examples/GravityTests/ExternalPointMass/run.sh | 2 +-
examples/GravityTests/Hernquist_circularorbit/run.sh | 2 +-
examples/GravityTests/Hernquist_radialinfall/run.sh | 2 +-
examples/GravityTests/HydrostaticHalo/run.sh | 2 +-
examples/GravityTests/IsothermalPotential/run.sh | 2 +-
examples/GravityTests/NFW_Halo/run.sh | 2 +-
examples/HydroTests/EvrardCollapse_3D/run.sh | 2 +-
examples/HydroTests/Gradients/run.sh | 6 +++---
examples/HydroTests/GreshoVortex_2D/run.sh | 2 +-
examples/HydroTests/GreshoVortex_3D/run.sh | 2 +-
examples/HydroTests/InteractingBlastWaves_1D/run.sh | 2 +-
examples/HydroTests/KelvinHelmholtzGrowthRate_2D/run.sh | 2 +-
examples/HydroTests/KelvinHelmholtzGrowthRate_3D/run.sh | 2 +-
examples/HydroTests/KelvinHelmholtz_2D/run.sh | 2 +-
examples/HydroTests/KeplerianRing/run.sh | 2 +-
examples/HydroTests/Noh_1D/run.sh | 2 +-
examples/HydroTests/Noh_2D/run.sh | 2 +-
examples/HydroTests/Noh_3D/run.sh | 2 +-
examples/HydroTests/PerturbedBox_3D/run.sh | 2 +-
examples/HydroTests/SedovBlast_1D/run.sh | 2 +-
examples/HydroTests/SedovBlast_2D/run.sh | 2 +-
examples/HydroTests/SedovBlast_3D/run.sh | 2 +-
examples/HydroTests/SineWavePotential_1D/run.sh | 2 +-
examples/HydroTests/SineWavePotential_2D/run.sh | 2 +-
examples/HydroTests/SineWavePotential_3D/run.sh | 2 +-
examples/HydroTests/SodShockSpherical_2D/run.sh | 2 +-
examples/HydroTests/SodShockSpherical_3D/run.sh | 2 +-
examples/HydroTests/SodShock_1D/run.sh | 2 +-
examples/HydroTests/SodShock_2D/run.sh | 2 +-
examples/HydroTests/SodShock_3D/run.sh | 2 +-
examples/HydroTests/SquareTest_2D/run.sh | 2 +-
examples/HydroTests/UniformBox_2D/run.sh | 2 +-
examples/HydroTests/UniformBox_3D/run.sh | 2 +-
examples/HydroTests/VacuumSpherical_2D/run.sh | 2 +-
examples/HydroTests/VacuumSpherical_3D/run.sh | 2 +-
examples/HydroTests/Vacuum_1D/run.sh | 2 +-
examples/HydroTests/Vacuum_2D/run.sh | 2 +-
examples/HydroTests/Vacuum_3D/run.sh | 2 +-
examples/IsolatedGalaxy/IsolatedGalaxy_dmparticles/run.sh | 2 +-
examples/IsolatedGalaxy/IsolatedGalaxy_potential/run.sh | 2 +-
examples/IsolatedGalaxy/IsolatedGalaxy_starformation/run.sh | 2 +-
examples/SantaBarbara/SantaBarbara-128/run.sh | 2 +-
examples/SantaBarbara/SantaBarbara-256/run.sh | 2 +-
examples/SmallCosmoVolume/SmallCosmoVolume_DM/run.sh | 2 +-
.../SmallCosmoVolume/SmallCosmoVolume_VELOCIraptor/run.sh | 2 +-
examples/SmallCosmoVolume/SmallCosmoVolume_cooling/run.sh | 2 +-
examples/SmallCosmoVolume/SmallCosmoVolume_hydro/run.sh | 2 +-
examples/SubgridTests/SmoothedMetallicity/run.sh | 2 +-
examples/SubgridTests/SupernovaeFeedback/run.sh | 2 +-
73 files changed, 75 insertions(+), 75 deletions(-)
diff --git a/examples/Cooling/CoolingBox/run.sh b/examples/Cooling/CoolingBox/run.sh
index 9cf6208e77..8a0d717e49 100755
--- a/examples/Cooling/CoolingBox/run.sh
+++ b/examples/Cooling/CoolingBox/run.sh
@@ -21,7 +21,7 @@ then
fi
# Run SWIFT
-../swift --cosmology --hydro --cooling --threads=4 -n 1000 coolingBox.yml
+../../swift --cosmology --hydro --cooling --threads=4 -n 1000 coolingBox.yml
# Check energy conservation and cooling rate
python energy_plot.py
diff --git a/examples/Cooling/CoolingHalo/run.sh b/examples/Cooling/CoolingHalo/run.sh
index c7c00fe81c..ca086fc93d 100755
--- a/examples/Cooling/CoolingHalo/run.sh
+++ b/examples/Cooling/CoolingHalo/run.sh
@@ -4,7 +4,7 @@
echo "Generating initial conditions for the isothermal potential box example..."
python makeIC.py 10000
-../swift --external-gravity --hydro --cooling --threads=16 cooling_halo.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --cooling --threads=16 cooling_halo.yml 2>&1 | tee output.log
python radial_profile.py 2. 200 100
diff --git a/examples/Cooling/CoolingHaloWithSpin/run.sh b/examples/Cooling/CoolingHaloWithSpin/run.sh
index 90d0cc84e7..17ec5251a1 100755
--- a/examples/Cooling/CoolingHaloWithSpin/run.sh
+++ b/examples/Cooling/CoolingHaloWithSpin/run.sh
@@ -5,7 +5,7 @@ echo "Generating initial conditions for the isothermal potential box example..."
python makeIC.py 10000
# Run SWIFT with external potential, SPH and cooling
-../swift --external-gravity --hydro --cooling --threads=1 cooling_halo.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --cooling --threads=1 cooling_halo.yml 2>&1 | tee output.log
# python radial_profile.py 10
diff --git a/examples/Cosmology/ComovingSodShock_1D/run.sh b/examples/Cosmology/ComovingSodShock_1D/run.sh
index 0d1fc4f1be..2eae1729e0 100755
--- a/examples/Cosmology/ComovingSodShock_1D/run.sh
+++ b/examples/Cosmology/ComovingSodShock_1D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --cosmology --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
# Plot the result
python plotSolution.py 1
diff --git a/examples/Cosmology/ComovingSodShock_2D/run.sh b/examples/Cosmology/ComovingSodShock_2D/run.sh
index bd6cc317d7..1723153e3e 100755
--- a/examples/Cosmology/ComovingSodShock_2D/run.sh
+++ b/examples/Cosmology/ComovingSodShock_2D/run.sh
@@ -13,6 +13,6 @@ then
fi
# Run SWIFT
-../swift --cosmology --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
python plotSolution.py 1
diff --git a/examples/Cosmology/ComovingSodShock_3D/run.sh b/examples/Cosmology/ComovingSodShock_3D/run.sh
index 00e4f669fd..b2ee90ecf8 100755
--- a/examples/Cosmology/ComovingSodShock_3D/run.sh
+++ b/examples/Cosmology/ComovingSodShock_3D/run.sh
@@ -13,6 +13,6 @@ then
fi
# Run SWIFT
-../swift --cosmology --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
python plotSolution.py 1
diff --git a/examples/Cosmology/ConstantCosmoVolume/run.sh b/examples/Cosmology/ConstantCosmoVolume/run.sh
index c7180b5232..4a30410e86 100755
--- a/examples/Cosmology/ConstantCosmoVolume/run.sh
+++ b/examples/Cosmology/ConstantCosmoVolume/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --cosmology --self-gravity --threads=8 constant_volume.yml 2>&1 | tee output.log
+../../swift --hydro --cosmology --self-gravity --threads=8 constant_volume.yml 2>&1 | tee output.log
# Plot the result
python plotSolution.py $i
diff --git a/examples/Cosmology/ZeldovichPancake_3D/run.sh b/examples/Cosmology/ZeldovichPancake_3D/run.sh
index 4153f2598f..0be82b2f00 100755
--- a/examples/Cosmology/ZeldovichPancake_3D/run.sh
+++ b/examples/Cosmology/ZeldovichPancake_3D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --cosmology --self-gravity --threads=8 zeldovichPancake.yml 2>&1 | tee output.log
+../../swift --hydro --cosmology --self-gravity --threads=8 zeldovichPancake.yml 2>&1 | tee output.log
# Plot the result
for i in {0..119}
diff --git a/examples/EAGLE_DMO_low_z/EAGLE_DMO_100/run.sh b/examples/EAGLE_DMO_low_z/EAGLE_DMO_100/run.sh
index 6a3b3a00d6..be3cdd8e3c 100755
--- a/examples/EAGLE_DMO_low_z/EAGLE_DMO_100/run.sh
+++ b/examples/EAGLE_DMO_low_z/EAGLE_DMO_100/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --self-gravity --threads=16 eagle_100.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=16 eagle_100.yml 2>&1 | tee output.log
diff --git a/examples/EAGLE_DMO_low_z/EAGLE_DMO_12/run.sh b/examples/EAGLE_DMO_low_z/EAGLE_DMO_12/run.sh
index f5e7e72947..669fa49823 100755
--- a/examples/EAGLE_DMO_low_z/EAGLE_DMO_12/run.sh
+++ b/examples/EAGLE_DMO_low_z/EAGLE_DMO_12/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --self-gravity --threads=16 eagle_12.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=16 eagle_12.yml 2>&1 | tee output.log
diff --git a/examples/EAGLE_DMO_low_z/EAGLE_DMO_25/run.sh b/examples/EAGLE_DMO_low_z/EAGLE_DMO_25/run.sh
index 6387472050..6d96edda65 100755
--- a/examples/EAGLE_DMO_low_z/EAGLE_DMO_25/run.sh
+++ b/examples/EAGLE_DMO_low_z/EAGLE_DMO_25/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --self-gravity --threads=16 eagle_25.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=16 eagle_25.yml 2>&1 | tee output.log
diff --git a/examples/EAGLE_DMO_low_z/EAGLE_DMO_50/run.sh b/examples/EAGLE_DMO_low_z/EAGLE_DMO_50/run.sh
index 486f7f33f7..8a08d0b040 100755
--- a/examples/EAGLE_DMO_low_z/EAGLE_DMO_50/run.sh
+++ b/examples/EAGLE_DMO_low_z/EAGLE_DMO_50/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --self-gravity --threads=16 eagle_50.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=16 eagle_50.yml 2>&1 | tee output.log
diff --git a/examples/EAGLE_low_z/EAGLE_100/run.sh b/examples/EAGLE_low_z/EAGLE_100/run.sh
index 12b6ff2a6e..28571d4803 100755
--- a/examples/EAGLE_low_z/EAGLE_100/run.sh
+++ b/examples/EAGLE_low_z/EAGLE_100/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_100.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_100.yml 2>&1 | tee output.log
diff --git a/examples/EAGLE_low_z/EAGLE_12/run.sh b/examples/EAGLE_low_z/EAGLE_12/run.sh
index 90128c4f6c..bceddf338a 100755
--- a/examples/EAGLE_low_z/EAGLE_12/run.sh
+++ b/examples/EAGLE_low_z/EAGLE_12/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_12.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_12.yml 2>&1 | tee output.log
diff --git a/examples/EAGLE_low_z/EAGLE_25/run.sh b/examples/EAGLE_low_z/EAGLE_25/run.sh
index 5961cf01a3..ea14dbde32 100755
--- a/examples/EAGLE_low_z/EAGLE_25/run.sh
+++ b/examples/EAGLE_low_z/EAGLE_25/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_25.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_25.yml 2>&1 | tee output.log
diff --git a/examples/EAGLE_low_z/EAGLE_50/run.sh b/examples/EAGLE_low_z/EAGLE_50/run.sh
index a08e3125b1..e2f2836900 100755
--- a/examples/EAGLE_low_z/EAGLE_50/run.sh
+++ b/examples/EAGLE_low_z/EAGLE_50/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_50.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_50.yml 2>&1 | tee output.log
diff --git a/examples/EAGLE_low_z/EAGLE_6/run.sh b/examples/EAGLE_low_z/EAGLE_6/run.sh
index 6df5902a05..47dbd95254 100755
--- a/examples/EAGLE_low_z/EAGLE_6/run.sh
+++ b/examples/EAGLE_low_z/EAGLE_6/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_6.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --stars --threads=16 eagle_6.yml 2>&1 | tee output.log
diff --git a/examples/GEAR/AgoraDisk/run.sh b/examples/GEAR/AgoraDisk/run.sh
index 6bf9a98342..5b85be7df8 100755
--- a/examples/GEAR/AgoraDisk/run.sh
+++ b/examples/GEAR/AgoraDisk/run.sh
@@ -38,7 +38,7 @@ cp $sim.hdf5 agora_disk.hdf5
python3 changeType.py agora_disk.hdf5
# Run SWIFT
-#../swift $flag --hydro --self-gravity --threads=4 agora_disk.yml 2>&1 | tee output.log
+#../../swift $flag --hydro --self-gravity --threads=4 agora_disk.yml 2>&1 | tee output.log
echo "Changing smoothing length to be Gadget compatible"
diff --git a/examples/GEAR/DwarfGalaxy/run.sh b/examples/GEAR/DwarfGalaxy/run.sh
index 17c0ac0c7e..1f63556e7f 100755
--- a/examples/GEAR/DwarfGalaxy/run.sh
+++ b/examples/GEAR/DwarfGalaxy/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --feedback --self-gravity --hydro --stars --threads=8 $@ dwarf_galaxy.yml 2>&1 | tee output.log
+../../swift --feedback --self-gravity --hydro --stars --threads=8 $@ dwarf_galaxy.yml 2>&1 | tee output.log
diff --git a/examples/GEAR/ZoomIn/run.sh b/examples/GEAR/ZoomIn/run.sh
index d9650dd778..59c8ff0d63 100755
--- a/examples/GEAR/ZoomIn/run.sh
+++ b/examples/GEAR/ZoomIn/run.sh
@@ -7,5 +7,5 @@ then
./getIC.sh
fi
-../swift --feedback --cosmology --self-gravity --hydro --stars --threads=8 zoom_in.yml 2>&1 | tee output.log
+../../swift --feedback --cosmology --self-gravity --hydro --stars --threads=8 zoom_in.yml 2>&1 | tee output.log
diff --git a/examples/GiantImpacts/GiantImpact/run.sh b/examples/GiantImpacts/GiantImpact/run.sh
index 8c61d42f4e..0324e72dee 100755
--- a/examples/GiantImpacts/GiantImpact/run.sh
+++ b/examples/GiantImpacts/GiantImpact/run.sh
@@ -17,7 +17,7 @@ fi
cd ../GiantImpactUranus
# Run SWIFT
-../swift -s -G -t 8 uranus_1e6.yml 2>&1 | tee output.log
+../../swift -s -G -t 8 uranus_1e6.yml 2>&1 | tee output.log
# Plot the solution
python3 plot_solution.py
diff --git a/examples/GravityTests/DiscPatch/GravityOnly/run.sh b/examples/GravityTests/DiscPatch/GravityOnly/run.sh
index 999ffa120f..ab05b60325 100755
--- a/examples/GravityTests/DiscPatch/GravityOnly/run.sh
+++ b/examples/GravityTests/DiscPatch/GravityOnly/run.sh
@@ -7,4 +7,4 @@ then
python makeIC.py 1000
fi
-../../swift --external-gravity --threads=2 disc-patch.yml
+../../../swift --external-gravity --threads=2 disc-patch.yml
diff --git a/examples/GravityTests/DiscPatch/HydroStatic/run.sh b/examples/GravityTests/DiscPatch/HydroStatic/run.sh
index 2dccc93f04..44b933f79c 100755
--- a/examples/GravityTests/DiscPatch/HydroStatic/run.sh
+++ b/examples/GravityTests/DiscPatch/HydroStatic/run.sh
@@ -13,6 +13,6 @@ then
fi
# Run SWIFT
-../../swift --external-gravity --hydro --threads=4 disc-patch-icc.yml 2>&1 | tee output.log
+../../../swift --external-gravity --hydro --threads=4 disc-patch-icc.yml 2>&1 | tee output.log
python plotSolution.py
diff --git a/examples/GravityTests/DiscPatch/HydroStatic_1D/run.sh b/examples/GravityTests/DiscPatch/HydroStatic_1D/run.sh
index 3e22727ada..a76db9422e 100755
--- a/examples/GravityTests/DiscPatch/HydroStatic_1D/run.sh
+++ b/examples/GravityTests/DiscPatch/HydroStatic_1D/run.sh
@@ -8,6 +8,6 @@ then
fi
# Run SWIFT
-../../swift --external-gravity --hydro --threads=4 disc-patch-icc.yml 2>&1 | tee output.log
+../../../swift --external-gravity --hydro --threads=4 disc-patch-icc.yml 2>&1 | tee output.log
python plotSolution.py
diff --git a/examples/GravityTests/ExternalPointMass/run.sh b/examples/GravityTests/ExternalPointMass/run.sh
index fa3a40e20c..6f96200e45 100755
--- a/examples/GravityTests/ExternalPointMass/run.sh
+++ b/examples/GravityTests/ExternalPointMass/run.sh
@@ -8,6 +8,6 @@ then
fi
rm -rf pointMass_*.hdf5
-../swift --external-gravity --threads=1 externalPointMass.yml 2>&1 | tee output.log
+../../swift --external-gravity --threads=1 externalPointMass.yml 2>&1 | tee output.log
python energy_plot.py
diff --git a/examples/GravityTests/Hernquist_circularorbit/run.sh b/examples/GravityTests/Hernquist_circularorbit/run.sh
index fe2eb0bd07..15cd929a5d 100755
--- a/examples/GravityTests/Hernquist_circularorbit/run.sh
+++ b/examples/GravityTests/Hernquist_circularorbit/run.sh
@@ -12,7 +12,7 @@ then
fi
# self gravity G, external potential g, hydro s, threads t and high verbosity v
-../swift --external-gravity --threads=6 hernquistcirc.yml 2>&1 | tee output.log
+../../swift --external-gravity --threads=6 hernquistcirc.yml 2>&1 | tee output.log
echo "Save plots of the circular orbits"
diff --git a/examples/GravityTests/Hernquist_radialinfall/run.sh b/examples/GravityTests/Hernquist_radialinfall/run.sh
index 0ad64e2dd2..7381f3ecd4 100755
--- a/examples/GravityTests/Hernquist_radialinfall/run.sh
+++ b/examples/GravityTests/Hernquist_radialinfall/run.sh
@@ -12,7 +12,7 @@ then
fi
rm -rf hernquist_*.hdf5
-../swift --external-gravity --threads=1 hernquist.yml 2>&1 | tee output.log
+../../swift --external-gravity --threads=1 hernquist.yml 2>&1 | tee output.log
diff --git a/examples/GravityTests/HydrostaticHalo/run.sh b/examples/GravityTests/HydrostaticHalo/run.sh
index cb67be62aa..a3f8b04b11 100755
--- a/examples/GravityTests/HydrostaticHalo/run.sh
+++ b/examples/GravityTests/HydrostaticHalo/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run for 10 dynamical times
-../swift --external-gravity --hydro --threads=1 hydrostatic.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --threads=1 hydrostatic.yml 2>&1 | tee output.log
echo "Plotting density profiles"
mkdir plots
diff --git a/examples/GravityTests/IsothermalPotential/run.sh b/examples/GravityTests/IsothermalPotential/run.sh
index bc44b2bd1f..4e6a502edd 100755
--- a/examples/GravityTests/IsothermalPotential/run.sh
+++ b/examples/GravityTests/IsothermalPotential/run.sh
@@ -8,6 +8,6 @@ then
fi
rm -rf Isothermal_*.hdf5
-../swift --external-gravity --threads=1 isothermal.yml 2>&1 | tee output.log
+../../swift --external-gravity --threads=1 isothermal.yml 2>&1 | tee output.log
python energy_plot.py
diff --git a/examples/GravityTests/NFW_Halo/run.sh b/examples/GravityTests/NFW_Halo/run.sh
index 3a21c96784..7f16def75f 100755
--- a/examples/GravityTests/NFW_Halo/run.sh
+++ b/examples/GravityTests/NFW_Halo/run.sh
@@ -11,7 +11,7 @@ then
fi
# self gravity G, external potential g, hydro s, threads t and high verbosity v
-../swift --external-gravity --threads=6 test.yml 2>&1 | tee output.log
+../../swift --external-gravity --threads=6 test.yml 2>&1 | tee output.log
if command -v python3 &>/dev/null; then
python3 makePlots.py
diff --git a/examples/HydroTests/EvrardCollapse_3D/run.sh b/examples/HydroTests/EvrardCollapse_3D/run.sh
index d9005a7214..ae02bcc0ba 100755
--- a/examples/HydroTests/EvrardCollapse_3D/run.sh
+++ b/examples/HydroTests/EvrardCollapse_3D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --self-gravity --threads=4 evrard.yml 2>&1 | tee output.log
+../../swift --hydro --self-gravity --threads=4 evrard.yml 2>&1 | tee output.log
# Get the high resolution 1D reference result if not present.
if [ ! -e evrardCollapse3D_exact.txt ]
diff --git a/examples/HydroTests/Gradients/run.sh b/examples/HydroTests/Gradients/run.sh
index 4a0a80a3ae..86ee9a6838 100755
--- a/examples/HydroTests/Gradients/run.sh
+++ b/examples/HydroTests/Gradients/run.sh
@@ -1,13 +1,13 @@
#! /bin/bash
python makeICs.py stretched
-../swift --hydro --threads=2 gradientsStretched.yml
+../../swift --hydro --threads=2 gradientsStretched.yml
python plot.py gradients_stretched_0001.hdf5 stretched
python makeICs.py cartesian
-../swift --hydro --threads=2 gradientsCartesian.yml
+../../swift --hydro --threads=2 gradientsCartesian.yml
python plot.py gradients_cartesian_0001.hdf5 cartesian
python makeICs.py random
-../swift --hydro --threads=2 gradientsRandom.yml
+../../swift --hydro --threads=2 gradientsRandom.yml
python plot.py gradients_random_0001.hdf5 random
diff --git a/examples/HydroTests/GreshoVortex_2D/run.sh b/examples/HydroTests/GreshoVortex_2D/run.sh
index 855d528bdf..0e24112a0f 100755
--- a/examples/HydroTests/GreshoVortex_2D/run.sh
+++ b/examples/HydroTests/GreshoVortex_2D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 gresho.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 gresho.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 11
diff --git a/examples/HydroTests/GreshoVortex_3D/run.sh b/examples/HydroTests/GreshoVortex_3D/run.sh
index 1967a77ba7..15b613782e 100755
--- a/examples/HydroTests/GreshoVortex_3D/run.sh
+++ b/examples/HydroTests/GreshoVortex_3D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=4 gresho.yml 2>&1 | tee output.log
+../../swift --hydro --threads=4 gresho.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 11
diff --git a/examples/HydroTests/InteractingBlastWaves_1D/run.sh b/examples/HydroTests/InteractingBlastWaves_1D/run.sh
index cb8519e7f9..42034d5e54 100755
--- a/examples/HydroTests/InteractingBlastWaves_1D/run.sh
+++ b/examples/HydroTests/InteractingBlastWaves_1D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 interactingBlastWaves.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 interactingBlastWaves.yml 2>&1 | tee output.log
# Get the high resolution reference solution if not present.
if [ ! -e interactingBlastWaves1D_exact.txt ]
diff --git a/examples/HydroTests/KelvinHelmholtzGrowthRate_2D/run.sh b/examples/HydroTests/KelvinHelmholtzGrowthRate_2D/run.sh
index 505d644984..4e565a2de5 100755
--- a/examples/HydroTests/KelvinHelmholtzGrowthRate_2D/run.sh
+++ b/examples/HydroTests/KelvinHelmholtzGrowthRate_2D/run.sh
@@ -9,7 +9,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 kelvinHelmholtzGrowthRate.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 kelvinHelmholtzGrowthRate.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 100
diff --git a/examples/HydroTests/KelvinHelmholtzGrowthRate_3D/run.sh b/examples/HydroTests/KelvinHelmholtzGrowthRate_3D/run.sh
index 505d644984..4e565a2de5 100755
--- a/examples/HydroTests/KelvinHelmholtzGrowthRate_3D/run.sh
+++ b/examples/HydroTests/KelvinHelmholtzGrowthRate_3D/run.sh
@@ -9,7 +9,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 kelvinHelmholtzGrowthRate.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 kelvinHelmholtzGrowthRate.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 100
diff --git a/examples/HydroTests/KelvinHelmholtz_2D/run.sh b/examples/HydroTests/KelvinHelmholtz_2D/run.sh
index ef823cb85b..355bf052a7 100755
--- a/examples/HydroTests/KelvinHelmholtz_2D/run.sh
+++ b/examples/HydroTests/KelvinHelmholtz_2D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=4 kelvinHelmholtz.yml 2>&1 | tee output.log
+../../swift --hydro --threads=4 kelvinHelmholtz.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 6
diff --git a/examples/HydroTests/KeplerianRing/run.sh b/examples/HydroTests/KeplerianRing/run.sh
index 236f512d1c..b11a0c1e52 100755
--- a/examples/HydroTests/KeplerianRing/run.sh
+++ b/examples/HydroTests/KeplerianRing/run.sh
@@ -9,7 +9,7 @@ then
fi
rm -rf keplerian_ring_*.hdf5
-../swift --external-gravity --hydro --threads=1 --verbose=1 keplerian_ring.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --threads=1 --verbose=1 keplerian_ring.yml 2>&1 | tee output.log
echo
echo
diff --git a/examples/HydroTests/Noh_1D/run.sh b/examples/HydroTests/Noh_1D/run.sh
index 15efd56e7b..0a7bd0574c 100755
--- a/examples/HydroTests/Noh_1D/run.sh
+++ b/examples/HydroTests/Noh_1D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 noh.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 noh.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 12
diff --git a/examples/HydroTests/Noh_2D/run.sh b/examples/HydroTests/Noh_2D/run.sh
index 5595ad8439..36e2d7db55 100755
--- a/examples/HydroTests/Noh_2D/run.sh
+++ b/examples/HydroTests/Noh_2D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=2 noh.yml 2>&1 | tee output.log
+../../swift --hydro --threads=2 noh.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 12
diff --git a/examples/HydroTests/Noh_3D/run.sh b/examples/HydroTests/Noh_3D/run.sh
index 7ff7b084f4..7845b5cfb5 100755
--- a/examples/HydroTests/Noh_3D/run.sh
+++ b/examples/HydroTests/Noh_3D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=2 noh.yml 2>&1 | tee output.log
+../../swift --hydro --threads=2 noh.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 12
diff --git a/examples/HydroTests/PerturbedBox_3D/run.sh b/examples/HydroTests/PerturbedBox_3D/run.sh
index ab771ea1f0..463f6fecf1 100755
--- a/examples/HydroTests/PerturbedBox_3D/run.sh
+++ b/examples/HydroTests/PerturbedBox_3D/run.sh
@@ -7,4 +7,4 @@ then
python makeIC.py 50
fi
-../swift --hydro --threads=16 perturbedBox.yml 2>&1 | tee output.log
+../../swift --hydro --threads=16 perturbedBox.yml 2>&1 | tee output.log
diff --git a/examples/HydroTests/SedovBlast_1D/run.sh b/examples/HydroTests/SedovBlast_1D/run.sh
index e5674dc15e..2888790eb1 100755
--- a/examples/HydroTests/SedovBlast_1D/run.sh
+++ b/examples/HydroTests/SedovBlast_1D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --limiter --threads=1 sedov.yml 2>&1 | tee output.log
+../../swift --hydro --limiter --threads=1 sedov.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 5
diff --git a/examples/HydroTests/SedovBlast_2D/run.sh b/examples/HydroTests/SedovBlast_2D/run.sh
index e2136f8f5e..0ad75f9d37 100755
--- a/examples/HydroTests/SedovBlast_2D/run.sh
+++ b/examples/HydroTests/SedovBlast_2D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --limiter --threads=1 sedov.yml 2>&1 | tee output.log
+../../swift --hydro --limiter --threads=1 sedov.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 5
diff --git a/examples/HydroTests/SedovBlast_3D/run.sh b/examples/HydroTests/SedovBlast_3D/run.sh
index 7f0788cc82..62af72bacc 100755
--- a/examples/HydroTests/SedovBlast_3D/run.sh
+++ b/examples/HydroTests/SedovBlast_3D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --limiter --threads=4 sedov.yml 2>&1 | tee output.log
+../../swift --hydro --limiter --threads=4 sedov.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 5
diff --git a/examples/HydroTests/SineWavePotential_1D/run.sh b/examples/HydroTests/SineWavePotential_1D/run.sh
index a725a88a17..920bd413a7 100755
--- a/examples/HydroTests/SineWavePotential_1D/run.sh
+++ b/examples/HydroTests/SineWavePotential_1D/run.sh
@@ -6,7 +6,7 @@ then
python makeIC.py
fi
-../swift --external-gravity --hydro --threads=2 sineWavePotential.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --threads=2 sineWavePotential.yml 2>&1 | tee output.log
for f in sineWavePotential_*.hdf5
do
diff --git a/examples/HydroTests/SineWavePotential_2D/run.sh b/examples/HydroTests/SineWavePotential_2D/run.sh
index a725a88a17..920bd413a7 100755
--- a/examples/HydroTests/SineWavePotential_2D/run.sh
+++ b/examples/HydroTests/SineWavePotential_2D/run.sh
@@ -6,7 +6,7 @@ then
python makeIC.py
fi
-../swift --external-gravity --hydro --threads=2 sineWavePotential.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --threads=2 sineWavePotential.yml 2>&1 | tee output.log
for f in sineWavePotential_*.hdf5
do
diff --git a/examples/HydroTests/SineWavePotential_3D/run.sh b/examples/HydroTests/SineWavePotential_3D/run.sh
index a725a88a17..920bd413a7 100755
--- a/examples/HydroTests/SineWavePotential_3D/run.sh
+++ b/examples/HydroTests/SineWavePotential_3D/run.sh
@@ -6,7 +6,7 @@ then
python makeIC.py
fi
-../swift --external-gravity --hydro --threads=2 sineWavePotential.yml 2>&1 | tee output.log
+../../swift --external-gravity --hydro --threads=2 sineWavePotential.yml 2>&1 | tee output.log
for f in sineWavePotential_*.hdf5
do
diff --git a/examples/HydroTests/SodShockSpherical_2D/run.sh b/examples/HydroTests/SodShockSpherical_2D/run.sh
index 90be0cc83c..609f2e0ae0 100755
--- a/examples/HydroTests/SodShockSpherical_2D/run.sh
+++ b/examples/HydroTests/SodShockSpherical_2D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
# Get the high resolution 1D reference solution if not present.
if [ ! -e sodShockSpherical2D_exact.txt ]
diff --git a/examples/HydroTests/SodShockSpherical_3D/run.sh b/examples/HydroTests/SodShockSpherical_3D/run.sh
index b28b69e0aa..c511dbcc6b 100755
--- a/examples/HydroTests/SodShockSpherical_3D/run.sh
+++ b/examples/HydroTests/SodShockSpherical_3D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
+../../swift --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
# Get the high resolution 1D reference solution if not present.
if [ ! -e sodShockSpherical3D_exact.txt ]
diff --git a/examples/HydroTests/SodShock_1D/run.sh b/examples/HydroTests/SodShock_1D/run.sh
index fb2ba77dac..8be97f7b34 100755
--- a/examples/HydroTests/SodShock_1D/run.sh
+++ b/examples/HydroTests/SodShock_1D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
# Plot the result
python plotSolution.py 1
diff --git a/examples/HydroTests/SodShock_2D/run.sh b/examples/HydroTests/SodShock_2D/run.sh
index 730cabcb9d..a11c6291a4 100755
--- a/examples/HydroTests/SodShock_2D/run.sh
+++ b/examples/HydroTests/SodShock_2D/run.sh
@@ -13,6 +13,6 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 sodShock.yml 2>&1 | tee output.log
python plotSolution.py 1
diff --git a/examples/HydroTests/SodShock_3D/run.sh b/examples/HydroTests/SodShock_3D/run.sh
index fee82ce3e1..aceeacd331 100755
--- a/examples/HydroTests/SodShock_3D/run.sh
+++ b/examples/HydroTests/SodShock_3D/run.sh
@@ -13,6 +13,6 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
+../../swift --hydro --threads=4 sodShock.yml 2>&1 | tee output.log
python plotSolution.py 1
diff --git a/examples/HydroTests/SquareTest_2D/run.sh b/examples/HydroTests/SquareTest_2D/run.sh
index f96bd4c0e1..dae0d742e7 100755
--- a/examples/HydroTests/SquareTest_2D/run.sh
+++ b/examples/HydroTests/SquareTest_2D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 square.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 square.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 5
diff --git a/examples/HydroTests/UniformBox_2D/run.sh b/examples/HydroTests/UniformBox_2D/run.sh
index 3c146d8b48..aad344187d 100755
--- a/examples/HydroTests/UniformBox_2D/run.sh
+++ b/examples/HydroTests/UniformBox_2D/run.sh
@@ -7,4 +7,4 @@ then
python makeIC.py 100
fi
-../swift --hydro --threads=16 uniformPlane.yml 2>&1 | tee output.log
+../../swift --hydro --threads=16 uniformPlane.yml 2>&1 | tee output.log
diff --git a/examples/HydroTests/UniformBox_3D/run.sh b/examples/HydroTests/UniformBox_3D/run.sh
index eb2648cc52..f93c53a14c 100755
--- a/examples/HydroTests/UniformBox_3D/run.sh
+++ b/examples/HydroTests/UniformBox_3D/run.sh
@@ -7,4 +7,4 @@ then
python makeIC.py 100
fi
-../swift --hydro --threads=16 uniformBox.yml 2>&1 | tee output.log
+../../swift --hydro --threads=16 uniformBox.yml 2>&1 | tee output.log
diff --git a/examples/HydroTests/VacuumSpherical_2D/run.sh b/examples/HydroTests/VacuumSpherical_2D/run.sh
index c88095abf3..54c5efdf96 100755
--- a/examples/HydroTests/VacuumSpherical_2D/run.sh
+++ b/examples/HydroTests/VacuumSpherical_2D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=4 vacuum.yml 2>&1 | tee output.log
+../../swift --hydro --threads=4 vacuum.yml 2>&1 | tee output.log
# Get the 1D high resolution reference result if not present.
if [ ! -e vacuumSpherical2D_exact.txt ]
diff --git a/examples/HydroTests/VacuumSpherical_3D/run.sh b/examples/HydroTests/VacuumSpherical_3D/run.sh
index ef6a84be13..32a55a7478 100755
--- a/examples/HydroTests/VacuumSpherical_3D/run.sh
+++ b/examples/HydroTests/VacuumSpherical_3D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=16 vacuum.yml 2>&1 | tee output.log
+../../swift --hydro --threads=16 vacuum.yml 2>&1 | tee output.log
# Get the reference solution if it is not present.
if [ ! -e vacuumSpherical3D_exact.txt ]
diff --git a/examples/HydroTests/Vacuum_1D/run.sh b/examples/HydroTests/Vacuum_1D/run.sh
index a840f7c1ba..c5f7e0344e 100755
--- a/examples/HydroTests/Vacuum_1D/run.sh
+++ b/examples/HydroTests/Vacuum_1D/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=1 vacuum.yml 2>&1 | tee output.log
+../../swift --hydro --threads=1 vacuum.yml 2>&1 | tee output.log
# Plot the result
python plotSolution.py 1
diff --git a/examples/HydroTests/Vacuum_2D/run.sh b/examples/HydroTests/Vacuum_2D/run.sh
index 5a526bb506..08f3ba19d6 100755
--- a/examples/HydroTests/Vacuum_2D/run.sh
+++ b/examples/HydroTests/Vacuum_2D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=4 vacuum.yml 2>&1 | tee output.log
+../../swift --hydro --threads=4 vacuum.yml 2>&1 | tee output.log
# Plot the result
python plotSolution.py 1
diff --git a/examples/HydroTests/Vacuum_3D/run.sh b/examples/HydroTests/Vacuum_3D/run.sh
index eaf7a32d4f..b75803f97f 100755
--- a/examples/HydroTests/Vacuum_3D/run.sh
+++ b/examples/HydroTests/Vacuum_3D/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --hydro --threads=16 vacuum.yml 2>&1 | tee output.log
+../../swift --hydro --threads=16 vacuum.yml 2>&1 | tee output.log
# Plot the result
python plotSolution.py 1
diff --git a/examples/IsolatedGalaxy/IsolatedGalaxy_dmparticles/run.sh b/examples/IsolatedGalaxy/IsolatedGalaxy_dmparticles/run.sh
index 5a4d5b6ce4..604c01d09a 100755
--- a/examples/IsolatedGalaxy/IsolatedGalaxy_dmparticles/run.sh
+++ b/examples/IsolatedGalaxy/IsolatedGalaxy_dmparticles/run.sh
@@ -6,7 +6,7 @@ then
./getIC.sh
fi
-../swift --external-gravity --self-gravity --stars --threads=16 isolated_galaxy.yml 2>&1 | tee output.log
+../../swift --external-gravity --self-gravity --stars --threads=16 isolated_galaxy.yml 2>&1 | tee output.log
echo "Make plots of conservation of total angular momentum"
diff --git a/examples/IsolatedGalaxy/IsolatedGalaxy_potential/run.sh b/examples/IsolatedGalaxy/IsolatedGalaxy_potential/run.sh
index e93b43b55b..8c0f2011d4 100755
--- a/examples/IsolatedGalaxy/IsolatedGalaxy_potential/run.sh
+++ b/examples/IsolatedGalaxy/IsolatedGalaxy_potential/run.sh
@@ -6,7 +6,7 @@ then
./getIC.sh
fi
-../swift --external-gravity --self-gravity --stars --threads=16 isolated_galaxy.yml 2>&1 | tee output.log
+../../swift --external-gravity --self-gravity --stars --threads=16 isolated_galaxy.yml 2>&1 | tee output.log
echo "Make plots of conservation of total angular momentum"
diff --git a/examples/IsolatedGalaxy/IsolatedGalaxy_starformation/run.sh b/examples/IsolatedGalaxy/IsolatedGalaxy_starformation/run.sh
index 0b6aa8ea3b..f2aa93fd0e 100755
--- a/examples/IsolatedGalaxy/IsolatedGalaxy_starformation/run.sh
+++ b/examples/IsolatedGalaxy/IsolatedGalaxy_starformation/run.sh
@@ -6,7 +6,7 @@ then
./getIC.sh
fi
-../swift --threads=32 --external-gravity --self-gravity --stars --star-formation --cooling --temperature --hydro isolated_galaxy.yml 2>&1 | tee output.log
+../../swift --threads=32 --external-gravity --self-gravity --stars --star-formation --cooling --temperature --hydro isolated_galaxy.yml 2>&1 | tee output.log
# Kennicutt-Schmidt law plot
python3 plotSolution.py
diff --git a/examples/SantaBarbara/SantaBarbara-128/run.sh b/examples/SantaBarbara/SantaBarbara-128/run.sh
index 206ba7bad0..72c219acb2 100755
--- a/examples/SantaBarbara/SantaBarbara-128/run.sh
+++ b/examples/SantaBarbara/SantaBarbara-128/run.sh
@@ -1,4 +1,4 @@
#!/bin/bash
# Run SWIFT
-../swift --cosmology --hydro --self-gravity --threads=28 santa_barbara.yml
+../../swift --cosmology --hydro --self-gravity --threads=28 santa_barbara.yml
diff --git a/examples/SantaBarbara/SantaBarbara-256/run.sh b/examples/SantaBarbara/SantaBarbara-256/run.sh
index 206ba7bad0..72c219acb2 100755
--- a/examples/SantaBarbara/SantaBarbara-256/run.sh
+++ b/examples/SantaBarbara/SantaBarbara-256/run.sh
@@ -1,4 +1,4 @@
#!/bin/bash
# Run SWIFT
-../swift --cosmology --hydro --self-gravity --threads=28 santa_barbara.yml
+../../swift --cosmology --hydro --self-gravity --threads=28 santa_barbara.yml
diff --git a/examples/SmallCosmoVolume/SmallCosmoVolume_DM/run.sh b/examples/SmallCosmoVolume/SmallCosmoVolume_DM/run.sh
index 9c002f4643..5d166e00a6 100755
--- a/examples/SmallCosmoVolume/SmallCosmoVolume_DM/run.sh
+++ b/examples/SmallCosmoVolume/SmallCosmoVolume_DM/run.sh
@@ -8,5 +8,5 @@ then
fi
# Run SWIFT
-../swift --cosmology --self-gravity --threads=8 small_cosmo_volume_dm.yml 2>&1 | tee output.log
+../../swift --cosmology --self-gravity --threads=8 small_cosmo_volume_dm.yml 2>&1 | tee output.log
diff --git a/examples/SmallCosmoVolume/SmallCosmoVolume_VELOCIraptor/run.sh b/examples/SmallCosmoVolume/SmallCosmoVolume_VELOCIraptor/run.sh
index cde550f0a5..b89662ed7a 100755
--- a/examples/SmallCosmoVolume/SmallCosmoVolume_VELOCIraptor/run.sh
+++ b/examples/SmallCosmoVolume/SmallCosmoVolume_VELOCIraptor/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --cosmology --hydro --self-gravity --velociraptor --threads=8 small_cosmo_volume.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --velociraptor --threads=8 small_cosmo_volume.yml 2>&1 | tee output.log
echo "Make a plot of the HMF"
if command -v python3 &>/dev/null; then
diff --git a/examples/SmallCosmoVolume/SmallCosmoVolume_cooling/run.sh b/examples/SmallCosmoVolume/SmallCosmoVolume_cooling/run.sh
index 5a2c67c77e..5ce9e2bb3b 100755
--- a/examples/SmallCosmoVolume/SmallCosmoVolume_cooling/run.sh
+++ b/examples/SmallCosmoVolume/SmallCosmoVolume_cooling/run.sh
@@ -14,7 +14,7 @@ then
fi
# Run SWIFT
-../swift --cosmology --hydro --self-gravity --cooling --threads=8 small_cosmo_volume.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --cooling --threads=8 small_cosmo_volume.yml 2>&1 | tee output.log
# Plot the temperature evolution
python plotTempEvolution.py
diff --git a/examples/SmallCosmoVolume/SmallCosmoVolume_hydro/run.sh b/examples/SmallCosmoVolume/SmallCosmoVolume_hydro/run.sh
index 12c98d1b63..b2585d70b7 100755
--- a/examples/SmallCosmoVolume/SmallCosmoVolume_hydro/run.sh
+++ b/examples/SmallCosmoVolume/SmallCosmoVolume_hydro/run.sh
@@ -8,7 +8,7 @@ then
fi
# Run SWIFT
-../swift --cosmology --hydro --self-gravity --threads=8 small_cosmo_volume.yml 2>&1 | tee output.log
+../../swift --cosmology --hydro --self-gravity --threads=8 small_cosmo_volume.yml 2>&1 | tee output.log
# Plot the temperature evolution
python plotTempEvolution.py
diff --git a/examples/SubgridTests/SmoothedMetallicity/run.sh b/examples/SubgridTests/SmoothedMetallicity/run.sh
index 9f31eac369..736a16fc14 100755
--- a/examples/SubgridTests/SmoothedMetallicity/run.sh
+++ b/examples/SubgridTests/SmoothedMetallicity/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --steps=1 --hydro --threads=4 smoothed_metallicity.yml 2>&1 | tee output.log
+../../swift --steps=1 --hydro --threads=4 smoothed_metallicity.yml 2>&1 | tee output.log
# Plot the solution
python plotSolution.py 1
diff --git a/examples/SubgridTests/SupernovaeFeedback/run.sh b/examples/SubgridTests/SupernovaeFeedback/run.sh
index 984cee2b41..af8802164c 100644
--- a/examples/SubgridTests/SupernovaeFeedback/run.sh
+++ b/examples/SubgridTests/SupernovaeFeedback/run.sh
@@ -13,7 +13,7 @@ then
fi
# Run SWIFT
-../swift --external-gravity --feedback --hydro --stars --threads=4 SN_feedback.yml 2>&1 | tee output.log
+../../swift --external-gravity --feedback --hydro --stars --threads=4 SN_feedback.yml 2>&1 | tee output.log
# Plot the solution
# TODO
--
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