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SWIFT
SWIFTsim
Commits
03c8026b
Commit
03c8026b
authored
May 02, 2019
by
Matthieu Schaller
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Read the properties of the EAGLE AGN model from the parameter file.
parent
be216e98
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11 changed files
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330 additions
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18 deletions
+330
-18
examples/EAGLE_low_z/EAGLE_6/eagle_6.yml
examples/EAGLE_low_z/EAGLE_6/eagle_6.yml
+9
-1
examples/main.c
examples/main.c
+24
-2
src/Makefile.am
src/Makefile.am
+4
-2
src/black_holes/Default/black_holes_properties.h
src/black_holes/Default/black_holes_properties.h
+100
-0
src/black_holes/EAGLE/black_holes.h
src/black_holes/EAGLE/black_holes.h
+12
-7
src/black_holes/EAGLE/black_holes_properties.h
src/black_holes/EAGLE/black_holes_properties.h
+130
-0
src/black_holes_properties.h
src/black_holes_properties.h
+34
-0
src/engine.c
src/engine.c
+3
-0
src/engine.h
src/engine.h
+5
-0
src/runner.c
src/runner.c
+8
-6
src/swift.h
src/swift.h
+1
-0
No files found.
examples/EAGLE_low_z/EAGLE_6/eagle_6.yml
View file @
03c8026b
...
...
@@ -68,7 +68,8 @@ InitialConditions:
periodic
:
1
cleanup_h_factors
:
1
# Remove the h-factors inherited from Gadget
cleanup_velocity_factors
:
1
# Remove the sqrt(a) factor in the velocities inherited from Gadget
black_holes_smoothing_length
:
0.1
EAGLEChemistry
:
# Solar abundances
init_abundance_metal
:
0.014
init_abundance_Hydrogen
:
0.70649785
...
...
@@ -151,3 +152,10 @@ EAGLEFeedback:
SNII_yield_factor_Magnesium
:
2.0
# (Optional) Correction factor to apply to the Magnesium yield from the SNII channel.
SNII_yield_factor_Silicon
:
1.0
# (Optional) Correction factor to apply to the Silicon yield from the SNII channel.
SNII_yield_factor_Iron
:
0.5
# (Optional) Correction factor to apply to the Iron yield from the SNII channel.
# EAGLE AGN model
EAGLEAGN
:
max_eddington_fraction
:
1.
# Maximal allowed accretion rate in units of the Eddington rate.
radiative_efficiency
:
0.1
# Fraction of the accreted mass that gets radiated.
coupling_efficiency
:
0.15
# Fraction of the radiated energy that couples to the gas in feedback events.
AGN_delta_T_K
:
3.16228e8
# Change in temperature to apply to the gas particle in an AGN feedback event in Kelvin.
\ No newline at end of file
examples/main.c
View file @
03c8026b
...
...
@@ -98,6 +98,7 @@ int main(int argc, char *argv[]) {
struct
stars_props
stars_properties
;
struct
feedback_props
feedback_properties
;
struct
entropy_floor_properties
entropy_floor
;
struct
black_holes_props
black_holes_properties
;
struct
part
*
parts
=
NULL
;
struct
phys_const
prog_const
;
struct
space
s
;
...
...
@@ -389,6 +390,16 @@ int main(int argc, char *argv[]) {
return
1
;
}
if
(
!
with_hydro
&&
with_black_holes
)
{
if
(
myrank
==
0
)
{
argparse_usage
(
&
argparse
);
printf
(
"
\n
Error: Cannot process black holes without gas, --hydro must be "
"chosen.
\n
"
);
}
return
1
;
}
/* Let's pin the main thread, now we know if affinity will be used. */
#if defined(HAVE_SETAFFINITY) && defined(HAVE_LIBNUMA) && defined(_GNU_SOURCE)
if
(
with_aff
&&
...
...
@@ -755,6 +766,16 @@ int main(int argc, char *argv[]) {
}
else
bzero
(
&
feedback_properties
,
sizeof
(
struct
feedback_props
));
/* Initialise the black holes properties */
if
(
with_black_holes
)
{
#ifdef BLACK_HOLES_NONE
error
(
"ERROR: Running with black_holes but compiled without it."
);
#endif
black_holes_props_init
(
&
black_holes_properties
,
&
prog_const
,
&
us
,
params
,
&
hydro_properties
,
&
cosmo
);
}
else
bzero
(
&
black_holes_properties
,
sizeof
(
struct
black_holes_props
));
/* Initialise the gravity properties */
if
(
with_self_gravity
)
gravity_props_init
(
&
gravity_properties
,
params
,
&
cosmo
,
with_cosmology
,
...
...
@@ -1005,8 +1026,9 @@ int main(int argc, char *argv[]) {
engine_init
(
&
e
,
&
s
,
params
,
N_total
[
0
],
N_total
[
1
],
N_total
[
2
],
engine_policies
,
talking
,
&
reparttype
,
&
us
,
&
prog_const
,
&
cosmo
,
&
hydro_properties
,
&
entropy_floor
,
&
gravity_properties
,
&
stars_properties
,
&
feedback_properties
,
&
mesh
,
&
potential
,
&
cooling_func
,
&
starform
,
&
chemistry
);
&
stars_properties
,
&
black_holes_properties
,
&
feedback_properties
,
&
mesh
,
&
potential
,
&
cooling_func
,
&
starform
,
&
chemistry
);
engine_config
(
0
,
&
e
,
params
,
nr_nodes
,
myrank
,
nr_threads
,
with_aff
,
talking
,
restart_file
);
...
...
src/Makefile.am
View file @
03c8026b
...
...
@@ -53,7 +53,7 @@ include_HEADERS = space.h runner.h queue.h task.h lock.h cell.h part.h const.h \
star_formation_struct.h star_formation.h star_formation_iact.h
\
star_formation_logger.h star_formation_logger_struct.h
\
velociraptor_struct.h velociraptor_io.h random.h memuse.h black_holes.h black_holes_io.h
\
feedback.h feedback_struct.h feedback_properties.h
black_holes_properties.h
feedback.h feedback_struct.h feedback_properties.h
# source files for EAGLE cooling
EAGLE_COOLING_SOURCES
=
...
...
@@ -197,8 +197,10 @@ nobase_noinst_HEADERS = align.h approx_math.h atomic.h barrier.h cycle.h error.h
feedback/EAGLE/yield_tables.h
\
black_holes/Default/black_holes.h black_holes/Default/black_holes_io.h
\
black_holes/Default/black_holes_part.h black_holes/Default/black_holes_iact.h
\
black_holes/Default/black_holes_properties.h
\
black_holes/EAGLE/black_holes.h black_holes/EAGLE/black_holes_io.h
\
black_holes/EAGLE/black_holes_part.h black_holes/EAGLE/black_holes_iact.h
black_holes/EAGLE/black_holes_part.h black_holes/EAGLE/black_holes_iact.h
\
black_holes/EAGLE/black_holes_properties.h
# Sources and flags for regular library
...
...
src/black_holes/Default/black_holes_properties.h
0 → 100644
View file @
03c8026b
/*******************************************************************************
* This file is part of SWIFT.
* Coypright (c) 2018 Matthieu Schaller (schaller@strw.leidenuniv.nl)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#ifndef SWIFT_DEFAULT_BLACK_HOLES_PROPERTIES_H
#define SWIFT_DEFAULT_BLACK_HOLES_PROPERTIES_H
#include "chemistry.h"
#include "hydro_properties.h"
/**
* @brief Properties of the black hole scheme.
*
* In this default scheme, we only have the properties
* required by the neighbour search.
*/
struct
black_holes_props
{
/*! Resolution parameter */
float
eta_neighbours
;
/*! Target weightd number of neighbours (for info only)*/
float
target_neighbours
;
/*! Smoothing length tolerance */
float
h_tolerance
;
/*! Tolerance on neighbour number (for info only)*/
float
delta_neighbours
;
/*! Maximal number of iterations to converge h */
int
max_smoothing_iterations
;
/*! Maximal change of h over one time-step */
float
log_max_h_change
;
};
/**
* @brief Initialise the black hole properties from the parameter file.
*
* We read the defaults from the hydro properties.
*
* @param bp The #black_holes_props.
* @param phys_const The physical constants in the internal unit system.
* @param us The internal unit system.
* @param params The parsed parameters.
* @param hydro_props The already read-in properties of the hydro scheme.
* @param cosmo The cosmological model.
*/
void
black_holes_props_init
(
struct
black_holes_props
*
bp
,
const
struct
phys_const
*
phys_const
,
const
struct
unit_system
*
us
,
struct
swift_params
*
params
,
const
struct
hydro_props
*
hydro_props
,
const
struct
cosmology
*
cosmo
)
{
/* Kernel properties */
bp
->
eta_neighbours
=
parser_get_opt_param_float
(
params
,
"BlackHoles:resolution_eta"
,
hydro_props
->
eta_neighbours
);
/* Tolerance for the smoothing length Newton-Raphson scheme */
bp
->
h_tolerance
=
parser_get_opt_param_float
(
params
,
"BlackHoles:h_tolerance"
,
hydro_props
->
h_tolerance
);
/* Get derived properties */
bp
->
target_neighbours
=
pow_dimension
(
bp
->
eta_neighbours
)
*
kernel_norm
;
const
float
delta_eta
=
bp
->
eta_neighbours
*
(
1
.
f
+
bp
->
h_tolerance
);
bp
->
delta_neighbours
=
(
pow_dimension
(
delta_eta
)
-
pow_dimension
(
bp
->
eta_neighbours
))
*
kernel_norm
;
/* Number of iterations to converge h */
bp
->
max_smoothing_iterations
=
parser_get_opt_param_int
(
params
,
"BlackHoles:max_ghost_iterations"
,
hydro_props
->
max_smoothing_iterations
);
/* Time integration properties */
const
float
max_volume_change
=
parser_get_opt_param_float
(
params
,
"BlackHoles:max_volume_change"
,
-
1
);
if
(
max_volume_change
==
-
1
)
bp
->
log_max_h_change
=
hydro_props
->
log_max_h_change
;
else
bp
->
log_max_h_change
=
logf
(
powf
(
max_volume_change
,
hydro_dimension_inv
));
}
#endif
/* SWIFT_DEFAULT_BLACK_HOLES_PROPERTIES_H */
src/black_holes/EAGLE/black_holes.h
View file @
03c8026b
...
...
@@ -19,13 +19,17 @@
#ifndef SWIFT_EAGLE_BLACK_HOLES_H
#define SWIFT_EAGLE_BLACK_HOLES_H
#include <float.h>
/* Local includes */
#include "black_holes_properties.h"
#include "cosmology.h"
#include "dimension.h"
#include "kernel_hydro.h"
#include "minmax.h"
#include "physical_constants.h"
/* Standard includes */
#include <float.h>
/**
* @brief Computes the gravity time-step of a given black hole particle.
*
...
...
@@ -162,8 +166,9 @@ black_holes_bpart_has_no_neighbours(struct bpart* restrict bp,
*
*/
__attribute__
((
always_inline
))
INLINE
static
void
black_holes_prepare_feedback
(
struct
bpart
*
restrict
bp
,
const
struct
phys_const
*
constants
,
const
struct
cosmology
*
cosmo
,
const
double
dt
)
{
struct
bpart
*
restrict
bp
,
const
struct
black_holes_props
*
props
,
const
struct
phys_const
*
constants
,
const
struct
cosmology
*
cosmo
,
const
double
dt
)
{
/* Gather some physical constants (all in internal units) */
const
double
G
=
constants
->
const_newton_G
;
...
...
@@ -172,9 +177,9 @@ __attribute__((always_inline)) INLINE static void black_holes_prepare_feedback(
const
double
sigma_Thomson
=
constants
->
const_thomson_cross_section
;
/* Gather the parameters of the model */
const
double
f_Edd
=
1
.
;
const
double
epsilon_r
=
0
.
1
;
const
double
epsilon_f
=
0
.
15
;
const
double
f_Edd
=
props
->
f_Edd
;
const
double
epsilon_r
=
props
->
epsilon_r
;
const
double
epsilon_f
=
props
->
epsilon_f
;
/* (Subgrid) mass of the BH (internal units) */
const
double
BH_mass
=
bp
->
subgrid_mass
;
...
...
@@ -207,7 +212,7 @@ __attribute__((always_inline)) INLINE static void black_holes_prepare_feedback(
gas_rho_phys
*
denominator_inv
*
denominator_inv
*
denominator_inv
;
/* Compute the Eddington rate */
/* Compute the Eddington rate
(internal units)
*/
const
double
Eddington_rate
=
4
.
*
M_PI
*
G
*
BH_mass
*
proton_mass
/
(
epsilon_r
*
c
*
sigma_Thomson
);
...
...
src/black_holes/EAGLE/black_holes_properties.h
0 → 100644
View file @
03c8026b
/*******************************************************************************
* This file is part of SWIFT.
* Coypright (c) 2018 Matthieu Schaller (schaller@strw.leidenuniv.nl)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#ifndef SWIFT_EAGLE_BLACK_HOLES_PROPERTIES_H
#define SWIFT_EAGLE_BLACK_HOLES_PROPERTIES_H
#include "chemistry.h"
#include "hydro_properties.h"
struct
black_holes_props
{
/* ----- Basic neighbour search properties ------ */
/*! Resolution parameter */
float
eta_neighbours
;
/*! Target weightd number of neighbours (for info only)*/
float
target_neighbours
;
/*! Smoothing length tolerance */
float
h_tolerance
;
/*! Tolerance on neighbour number (for info only)*/
float
delta_neighbours
;
/*! Maximal number of iterations to converge h */
int
max_smoothing_iterations
;
/*! Maximal change of h over one time-step */
float
log_max_h_change
;
/* ----- Properties of the accretion model ------ */
/*! Maximal fraction of the Eddington rate allowed. */
float
f_Edd
;
/*! Radiative efficiency of the black holes. */
float
epsilon_r
;
/*! Feedback coupling efficiency of the black holes. */
float
epsilon_f
;
/* ---- Properties of the feedback model ------- */
/*! Temperature increase induced by AGN feedback (Kelvin) */
float
AGN_delta_T_desired
;
};
/**
* @brief Initialise the black hole properties from the parameter file.
*
* For the basic black holes neighbour finding properties we use the
* defaults from the hydro scheme if the users did not provide specific
* values.
*
* @param bp The #black_holes_props.
* @param phys_const The physical constants in the internal unit system.
* @param us The internal unit system.
* @param params The parsed parameters.
* @param hydro_props The already read-in properties of the hydro scheme.
* @param cosmo The cosmological model.
*/
INLINE
static
void
black_holes_props_init
(
struct
black_holes_props
*
bp
,
const
struct
phys_const
*
phys_const
,
const
struct
unit_system
*
us
,
struct
swift_params
*
params
,
const
struct
hydro_props
*
hydro_props
,
const
struct
cosmology
*
cosmo
)
{
/* Read in the basic neighbour search properties or default to the hydro
ones if the user did not provide any different values */
/* Kernel properties */
bp
->
eta_neighbours
=
parser_get_opt_param_float
(
params
,
"BlackHoles:resolution_eta"
,
hydro_props
->
eta_neighbours
);
/* Tolerance for the smoothing length Newton-Raphson scheme */
bp
->
h_tolerance
=
parser_get_opt_param_float
(
params
,
"BlackHoles:h_tolerance"
,
hydro_props
->
h_tolerance
);
/* Get derived properties */
bp
->
target_neighbours
=
pow_dimension
(
bp
->
eta_neighbours
)
*
kernel_norm
;
const
float
delta_eta
=
bp
->
eta_neighbours
*
(
1
.
f
+
bp
->
h_tolerance
);
bp
->
delta_neighbours
=
(
pow_dimension
(
delta_eta
)
-
pow_dimension
(
bp
->
eta_neighbours
))
*
kernel_norm
;
/* Number of iterations to converge h */
bp
->
max_smoothing_iterations
=
parser_get_opt_param_int
(
params
,
"BlackHoles:max_ghost_iterations"
,
hydro_props
->
max_smoothing_iterations
);
/* Time integration properties */
const
float
max_volume_change
=
parser_get_opt_param_float
(
params
,
"BlackHoles:max_volume_change"
,
-
1
);
if
(
max_volume_change
==
-
1
)
bp
->
log_max_h_change
=
hydro_props
->
log_max_h_change
;
else
bp
->
log_max_h_change
=
logf
(
powf
(
max_volume_change
,
hydro_dimension_inv
));
/* Accretion parameters ---------------------------------- */
bp
->
f_Edd
=
parser_get_param_float
(
params
,
"EAGLEAGN:max_eddington_fraction"
);
bp
->
epsilon_r
=
parser_get_param_float
(
params
,
"EAGLEAGN:radiative_efficiency"
);
bp
->
epsilon_f
=
parser_get_param_float
(
params
,
"EAGLEAGN:coupling_efficiency"
);
/* Feedback parameters ---------------------------------- */
bp
->
AGN_delta_T_desired
=
parser_get_param_float
(
params
,
"EAGLEAGN:AGN_delta_T_K"
);
}
#endif
/* SWIFT_EAGLE_BLACK_HOLES_PROPERTIES_H */
src/black_holes_properties.h
0 → 100644
View file @
03c8026b
/*******************************************************************************
* This file is part of SWIFT.
* Coypright (c) 2018 Matthieu Schaller (matthieu.schaller@durham.ac.uk)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
#ifndef SWIFT_BLACK_HOLES_PROPERTIES_H
#define SWIFT_BLACK_HOLES_PROPERTIES_H
/* Config parameters. */
#include "../config.h"
/* Select the correct black_holes model */
#if defined(BLACK_HOLES_NONE)
#include "./black_holes/Default/black_holes_properties.h"
#elif defined(BLACK_HOLES_EAGLE)
#include "./black_holes/EAGLE/black_holes_properties.h"
#else
#error "Invalid choice of black hole model"
#endif
#endif
/* SWIFT_BLACK_HOLES_PROPERTIES_H */
src/engine.c
View file @
03c8026b
...
...
@@ -4858,6 +4858,7 @@ void engine_unpin(void) {
* @param entropy_floor The #entropy_floor_properties for this run.
* @param gravity The #gravity_props used for this run.
* @param stars The #stars_props used for this run.
* @param black_holes The #black_holes_props used for this run.
* @param feedback The #feedback_props used for this run.
* @param mesh The #pm_mesh used for the long-range periodic forces.
* @param potential The properties of the external potential.
...
...
@@ -4873,6 +4874,7 @@ void engine_init(struct engine *e, struct space *s, struct swift_params *params,
struct cosmology *cosmo, struct hydro_props *hydro,
const struct entropy_floor_properties *entropy_floor,
struct gravity_props *gravity, const struct stars_props *stars,
const struct black_holes_props *black_holes,
const struct feedback_props *feedback, struct pm_mesh *mesh,
const struct external_potential *potential,
struct cooling_function_data *cooling_func,
...
...
@@ -4940,6 +4942,7 @@ void engine_init(struct engine *e, struct space *s, struct swift_params *params,
e->entropy_floor = entropy_floor;
e->gravity_properties = gravity;
e->stars_properties = stars;
e->black_holes_properties = black_holes;
e->mesh = mesh;
e->external_potential = potential;
e->cooling_func = cooling_func;
...
...
src/engine.h
View file @
03c8026b
...
...
@@ -34,6 +34,7 @@
/* Includes. */
#include "barrier.h"
#include "black_holes_properties.h"
#include "chemistry_struct.h"
#include "clocks.h"
#include "collectgroup.h"
...
...
@@ -399,6 +400,9 @@ struct engine {
/* Properties of the star model */
const
struct
stars_props
*
stars_properties
;
/* Properties of the black hole model */
const
struct
black_holes_props
*
black_holes_properties
;
/* Properties of the self-gravity scheme */
struct
gravity_props
*
gravity_properties
;
...
...
@@ -473,6 +477,7 @@ void engine_init(struct engine *e, struct space *s, struct swift_params *params,
struct
cosmology
*
cosmo
,
struct
hydro_props
*
hydro
,
const
struct
entropy_floor_properties
*
entropy_floor
,
struct
gravity_props
*
gravity
,
const
struct
stars_props
*
stars
,
const
struct
black_holes_props
*
black_holes
,
const
struct
feedback_props
*
feedback
,
struct
pm_mesh
*
mesh
,
const
struct
external_potential
*
potential
,
struct
cooling_function_data
*
cooling_func
,
...
...
src/runner.c
View file @
03c8026b
...
...
@@ -42,6 +42,7 @@
#include "approx_math.h"
#include "atomic.h"
#include "black_holes.h"
#include "black_holes_properties.h"
#include "cell.h"
#include "chemistry.h"
#include "const.h"
...
...
@@ -515,9 +516,9 @@ void runner_do_black_holes_ghost(struct runner *r, struct cell *c, int timer) {
const
struct
cosmology
*
cosmo
=
e
->
cosmology
;
const
float
black_holes_h_max
=
e
->
hydro_properties
->
h_max
;
const
float
black_holes_h_min
=
e
->
hydro_properties
->
h_min
;
const
float
eps
=
e
->
hydro
_properties
->
h_tolerance
;
const
float
eps
=
e
->
black_holes
_properties
->
h_tolerance
;
const
float
black_holes_eta_dim
=
pow_dimension
(
e
->
hydro
_properties
->
eta_neighbours
);
pow_dimension
(
e
->
black_holes
_properties
->
eta_neighbours
);
const
int
max_smoothing_iter
=
e
->
hydro_properties
->
max_smoothing_iterations
;
int
redo
=
0
,
bcount
=
0
;
...
...
@@ -633,8 +634,9 @@ void runner_do_black_holes_ghost(struct runner *r, struct cell *c, int timer) {
((
bp
->
h
<=
black_holes_h_min
)
&&
(
f
>
0
.
f
)))
{
/* Compute variables required for the feedback loop */
black_holes_prepare_feedback
(
bp
,
e
->
physical_constants
,
e
->
cosmology
,
dt
);
black_holes_prepare_feedback
(
bp
,
e
->
black_holes_properties
,
e
->
physical_constants
,
e
->
cosmology
,
dt
);
/* Reset quantities computed by the feedback loop */
black_holes_reset_feedback
(
bp
);
...
...
@@ -731,8 +733,8 @@ void runner_do_black_holes_ghost(struct runner *r, struct cell *c, int timer) {
h_max
=
max
(
h_max
,
bp
->
h
);
/* Compute variables required for the feedback loop */
black_holes_prepare_feedback
(
bp
,
e
->
physical_constants
,
e
->
cosmology
,
dt
);
black_holes_prepare_feedback
(
bp
,
e
->
black_holes_properties
,
e
->
physical_constants
,
e
->
cosmology
,
dt
);
/* Reset quantities computed by the feedback loop */
black_holes_reset_feedback
(
bp
);
...
...
src/swift.h
View file @
03c8026b
...
...
@@ -25,6 +25,7 @@
/* Local headers. */
#include "active.h"
#include "atomic.h"
#include "black_holes_properties.h"
#include "cache.h"
#include "cell.h"
#include "chemistry.h"
...
...
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