Update cell graph

Small changes to the cell graph:

• moving to the same implementation than the task plots
• adding a new argument to swift
• writes the files every n steps and not only at the beginning.

@rgb Here is the merge request with the changes that I mentioned in my email.

Thanks. Please also update the README and the RTD for the new command-line argument.

It is done

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• a7e6ad6a - Update doc with new argument

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• 84f139fe - Applied code formatting tool

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• d2592e2f - Update all READMEs. Make the script runnable.

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Maybe I am doing something wrong but I don't see anything on the webpage generated besides the search box.

Should I run this on some webserver and not just on my machine?

For security, most web browsers do not let a web page access local files. To solve this issue, you will need to use npm (see http://icc.dur.ac.uk/swift/docs/AnalysisTools/index.html#cell-graph). If you want to check the error, you can go into your browser's developer tools and look at the debugger.

If you are running a large simulation, it might be that loading the CSV file is slow.

It seems that Firefox decided to move to the same restriction than chrome, therefore I will not mention the browser anymore in the doc

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• c84318c0 - Remove mention to chrome

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merged

mentioned in commit 185a140f