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Allow user to overwrite Scheduler parameters when restarting.

Merged Matthieu Schaller requested to merge allow_scheduler_changes_on_restart into master

I think this does what it says on the tin.

All the changeable Scheduler parameters are now read in again from the fresh YAML file in engine_config(), which should allow users to overwrite them when restarting.

The YAML file itself is re-read anyway and passed to engine_config().

What do you think?