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Logger add periodicity

Loic Hausammann requested to merge logger_add_periodicity into master

Implement #726 (closed) @nnrw56 you might be interested.

Here I am doing a few different things in order to add the periodicity:

  • Finally starting to implement the yaml file.
  • Adding a structure that stores the required parameters
  • Adding some checks in src/logger.c
  • Fixing a small issue in logger/logger_index.c
  • Improving the script tools/ in order to be able to read a bit the logfile.
  • Adding a python function that provides the box size.

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