Code formatting and comments correction.

src/chemistry.c

@@ -34,9 +34,9 @@
  * @param chemistry The chemistry properties to initialize
  */
 void chemistry_init(const struct swift_params* parameter_file,
-                  const struct unit_system* us,
-                  const struct phys_const* phys_const,
-                  struct chemistry_part_data* chemistry) {
+                    const struct unit_system* us,
+                    const struct phys_const* phys_const,
+                    struct chemistry_part_data* chemistry) {
 
   chemistry_init_backend(parameter_file, us, phys_const, chemistry);
 }

src/chemistry.h

@@ -39,9 +39,9 @@
 
 /* Common functions */
 void chemistry_init(const struct swift_params* parameter_file,
-		    const struct unit_system* us,
-		    const struct phys_const* phys_const,
-		    struct chemistry_part_data* chem);
+                    const struct unit_system* us,
+                    const struct phys_const* phys_const,
+                    struct chemistry_part_data* chem);
 
 void chemistry_print(const struct chemistry_part_data* chem);
 

src/chemistry/grackle/chemistry_io.h

@@ -27,17 +27,17 @@
  * @param num_fields The number of i/o fields to read.
  */
 void chemistry_read_particles(struct part* parts, struct io_props* list,
-                          int* num_fields) {
+                              int* num_fields) {
 
   list += *num_fields;
   *num_fields += 1;
 
   /* List what we want to read */
-  list[0] = io_make_input_field("HeDensity", FLOAT, 1, COMPULSORY,
-                                UNIT_CONV_DENSITY, parts, chemistry_data.he_density);
+  list[0] =
+      io_make_input_field("HeDensity", FLOAT, 1, COMPULSORY, UNIT_CONV_DENSITY,
+                          parts, chemistry_data.he_density);
 }
 
-
 /**
  * @brief Specifies which particle fields to write to a dataset
  *
@@ -46,24 +46,20 @@ void chemistry_read_particles(struct part* parts, struct io_props* list,
  * @param num_fields The number of i/o fields to write.
  */
 void chemistry_write_particles(const struct part* parts, struct io_props* list,
-                           int* num_fields) {
+                               int* num_fields) {
 
   list += *num_fields;
   *num_fields += 1;
-  
+
   list[0] = io_make_output_field("HeDensity", FLOAT, 1, UNIT_CONV_DENSITY,
                                  parts, chemistry_data.he_density);
 }
 
-
 /**
  * @brief Writes the current model of SPH to the file
  * @param h_grpsph The HDF5 group in which to write
  */
 void writeChemistryFlavor(hid_t h_grpsph) {
 
-  /* Viscosity and thermal conduction */
-  io_write_attribute_s(
-      h_grpsph, "Chemistry Model",
-      "Grackle");
+  io_write_attribute_s(h_grpsph, "Chemistry Model", "Grackle");
 }

src/chemistry/none/chemistry_io.h

@@ -27,12 +27,11 @@
  * @param num_fields The number of i/o fields to read.
  */
 void chemistry_read_particles(struct part* parts, struct io_props* list,
-                          int* num_fields) {
+                              int* num_fields) {
 
   /* update num_fields and list according to hydro_io */
 }
 
-
 /**
  * @brief Specifies which particle fields to write to a dataset
  *
@@ -41,20 +40,16 @@ void chemistry_read_particles(struct part* parts, struct io_props* list,
  * @param num_fields The number of i/o fields to write.
  */
 void chemistry_write_particles(const struct part* parts, struct io_props* list,
-                           int* num_fields) {
+                               int* num_fields) {
 
   /* update num_fields and list according to hydro_io */
 }
 
-
 /**
  * @brief Writes the current model of SPH to the file
  * @param h_grpsph The HDF5 group in which to write
  */
 void writeChemistryFlavor(hid_t h_grpsph) {
 
-  /* Viscosity and thermal conduction */
-  io_write_attribute_s(
-      h_grpsph, "Chemistry Model",
-      "None");
+  io_write_attribute_s(h_grpsph, "Chemistry Model", "None");
 }

src/cooling/const_du/cooling.h

@@ -48,12 +48,10 @@
  * @brief Writes the current model of SPH to the file
  * @param h_grpsph The HDF5 group in which to write
  */
-__attribute__((always_inline)) INLINE static void writeCoolingFlavor(hid_t h_grpsph) {
+__attribute__((always_inline)) INLINE static void writeCoolingFlavor(
+    hid_t h_grpsph) {
 
-  /* Viscosity and thermal conduction */
-  io_write_attribute_s(
-      h_grpsph, "Cooling Model",
-      "const_du");
+  io_write_attribute_s(h_grpsph, "Cooling Model", "const_du");
 }
 
 /**

src/cooling/const_lambda/cooling.h

@@ -41,12 +41,10 @@
  * @brief Writes the current model of SPH to the file
  * @param h_grpsph The HDF5 group in which to write
  */
-__attribute__((always_inline)) INLINE static void writeCoolingFlavor(hid_t h_grpsph) {
+__attribute__((always_inline)) INLINE static void writeCoolingFlavor(
+    hid_t h_grpsph) {
 
-  /* Viscosity and thermal conduction */
-  io_write_attribute_s(
-      h_grpsph, "Cooling Model",
-      "const_lambda");
+  io_write_attribute_s(h_grpsph, "Cooling Model", "const_lambda");
 }
 
 /**

src/cooling/grackle/cooling.h

@@ -46,12 +46,10 @@
  * @brief Writes the current model of SPH to the file
  * @param h_grpsph The HDF5 group in which to write
  */
-__attribute__((always_inline)) INLINE static void writeCoolingFlavor(hid_t h_grpsph) {
+__attribute__((always_inline)) INLINE static void writeCoolingFlavor(
+    hid_t h_grpsph) {
 
-  /* Viscosity and thermal conduction */
-  io_write_attribute_s(
-      h_grpsph, "Cooling Model",
-      "Grackle");
+  io_write_attribute_s(h_grpsph, "Cooling Model", "Grackle");
 }
 
 /**

src/cooling/none/cooling.h

@@ -41,12 +41,10 @@
  * @brief Writes the current model of SPH to the file
  * @param h_grpsph The HDF5 group in which to write
  */
-__attribute__((always_inline)) INLINE static void writeCoolingFlavor(hid_t h_grpsph) {
+__attribute__((always_inline)) INLINE static void writeCoolingFlavor(
+    hid_t h_grpsph) {
 
-  /* Viscosity and thermal conduction */
-  io_write_attribute_s(
-      h_grpsph, "Cooling Model",
-      "None");
+  io_write_attribute_s(h_grpsph, "Cooling Model", "None");
 }
 
 /**

src/hydro/Gadget2/hydro_iact.h

@@ -104,7 +104,6 @@ __attribute__((always_inline)) INLINE static void runner_iact_density(
   pj->density.rot_v[1] += facj * curlvr[1];
   pj->density.rot_v[2] += facj * curlvr[2];
 
-
 #ifdef DEBUG_INTERACTIONS_SPH
   /* Update ngb counters */
   if (pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)

src/hydro/Gadget2/hydro_io.h

@@ -20,11 +20,11 @@
 #define SWIFT_GADGET2_HYDRO_IO_H
 
 #include "adiabatic_index.h"
+#include "chemistry_io.h"
+#include "cooling.h"
 #include "hydro.h"
 #include "io_properties.h"
 #include "kernel_hydro.h"
-#include "chemistry_io.h"
-#include "cooling.h"
 
 /**
  * @brief Specifies which particle fields to read from a dataset
@@ -123,7 +123,7 @@ void hydro_write_particles(const struct part* parts, struct io_props* list,
       "Pressure", FLOAT, 1, UNIT_CONV_PRESSURE, parts, convert_P);
 
 #ifdef DEBUG_INTERACTIONS_SPH
-  
+
   list[10] = io_make_output_field("Num_ngb_density", INT, 1, UNIT_CONV_NO_UNITS,
                                   parts, num_ngb_density);
   list[11] = io_make_output_field("Num_ngb_force", INT, 1, UNIT_CONV_NO_UNITS,

src/hydro/Gadget2/hydro_part.h

@@ -135,7 +135,7 @@ struct part {
   timebin_t time_bin;
 
   struct chemistry_part_data chemistry_data;
-  
+
 #ifdef SWIFT_DEBUG_CHECKS
 
   /* Time of the last drift */

src/io_properties.h

@@ -23,8 +23,8 @@
 #include "../config.h"
 
 /* Local includes. */
-#include "inline.h"
 #include "common_io.h"
+#include "inline.h"
 
 /**
  * @brief The two sorts of data present in the GADGET IC files: compulsory to

src/swift.h

@@ -27,6 +27,7 @@
 #include "atomic.h"
 #include "cache.h"
 #include "cell.h"
+#include "chemistry.h"
 #include "clocks.h"
 #include "const.h"
 #include "cooling.h"