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Commit e5e905bd authored by Matthieu Schaller's avatar Matthieu Schaller
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Code formatting and correct file permission for the new test script.

parent 7a0804aa
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examples/check_interactions.sh 100644 → 100755
View file @ e5e905bd
File mode changed from 100644 to 100755
src/hydro/Gadget2/hydro.h
View file @ e5e905bd
......@@ -179,7 +179,7 @@ __attribute__((always_inline)) INLINE static void hydro_init_part(
for (int i = 0; i < MAX_NUM_OF_NEIGHBOURS; ++i) p->ids_ngbs_density[i] = -1;
p->num_ngb_density = 0;
#endif
p->rho = 0.f;
p->density.wcount = 0.f;
p->density.wcount_dh = 0.f;
......@@ -320,7 +320,7 @@ __attribute__((always_inline)) INLINE static void hydro_reset_acceleration(
for (int i = 0; i < MAX_NUM_OF_NEIGHBOURS; ++i) p->ids_ngbs_force[i] = -1;
p->num_ngb_force = 0;
#endif
/* Reset the acceleration. */
p->a_hydro[0] = 0.0f;
p->a_hydro[1] = 0.0f;
......
src/hydro/Gadget2/hydro_iact.h
View file @ e5e905bd
......@@ -103,18 +103,17 @@ __attribute__((always_inline)) INLINE static void runner_iact_density(
pj->density.rot_v[0] += facj * curlvr[0];
pj->density.rot_v[1] += facj * curlvr[1];
pj->density.rot_v[2] += facj * curlvr[2];
#ifdef DEBUG_INTERACTIONS_SPH
/* Update ngb counters */
if(pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
if (pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] = pj->id;
++pi->num_ngb_density;
if(pj->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
if (pj->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pj->ids_ngbs_density[pj->num_ngb_density] = pi->id;
++pj->num_ngb_density;
#endif
}
/**
......@@ -163,14 +162,13 @@ __attribute__((always_inline)) INLINE static void runner_iact_nonsym_density(
pi->density.rot_v[0] += fac * curlvr[0];
pi->density.rot_v[1] += fac * curlvr[1];
pi->density.rot_v[2] += fac * curlvr[2];
#ifdef DEBUG_INTERACTIONS_SPH
/* Update ngb counters */
if(pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
if (pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] = pj->id;
++pi->num_ngb_density;
#endif
}
#ifdef WITH_VECTORIZATION
......@@ -494,18 +492,17 @@ __attribute__((always_inline)) INLINE static void runner_iact_force(
/* Change in entropy */
pi->entropy_dt += mj * visc_term * dvdr;
pj->entropy_dt += mi * visc_term * dvdr;
#ifdef DEBUG_INTERACTIONS_SPH
/* Update ngb counters */
if(pi->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
if (pi->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_force[pi->num_ngb_force] = pj->id;
++pi->num_ngb_force;
if(pj->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
if (pj->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
pj->ids_ngbs_force[pj->num_ngb_force] = pi->id;
++pj->num_ngb_force;
#endif
}
/**
......@@ -595,14 +592,13 @@ __attribute__((always_inline)) INLINE static void runner_iact_nonsym_force(
/* Change in entropy */
pi->entropy_dt += mj * visc_term * dvdr;
#ifdef DEBUG_INTERACTIONS_SPH
/* Update ngb counters */
if(pi->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
if (pi->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_force[pi->num_ngb_force] = pj->id;
++pi->num_ngb_force;
#endif
}
#ifdef WITH_VECTORIZATION
......
src/hydro/Gadget2/hydro_io.h
View file @ e5e905bd
......@@ -119,15 +119,16 @@ void hydro_write_particles(const struct part* parts, struct io_props* list,
"Pressure", FLOAT, 1, UNIT_CONV_PRESSURE, parts, convert_P);
#ifdef DEBUG_INTERACTIONS_SPH
list[10] = io_make_output_field("Num_ngb_density", INT, 1, UNIT_CONV_NO_UNITS,
parts, num_ngb_density);
parts, num_ngb_density);
list[11] = io_make_output_field("Num_ngb_force", INT, 1, UNIT_CONV_NO_UNITS,
parts, num_ngb_force);
list[12] = io_make_output_field("Ids_ngb_density", LONGLONG, MAX_NUM_OF_NEIGHBOURS,
UNIT_CONV_NO_UNITS, parts, ids_ngbs_density);
list[13] = io_make_output_field("Ids_ngb_force", LONGLONG, MAX_NUM_OF_NEIGHBOURS,
UNIT_CONV_NO_UNITS, parts, ids_ngbs_force);
parts, num_ngb_force);
list[12] =
io_make_output_field("Ids_ngb_density", LONGLONG, MAX_NUM_OF_NEIGHBOURS,
UNIT_CONV_NO_UNITS, parts, ids_ngbs_density);
list[13] =
io_make_output_field("Ids_ngb_force", LONGLONG, MAX_NUM_OF_NEIGHBOURS,
UNIT_CONV_NO_UNITS, parts, ids_ngbs_force);
#endif
}
/**
......
src/parallel_io.c
View file @ e5e905bd
......@@ -279,9 +279,9 @@ void writeArray_chunk(struct engine* e, hid_t h_data, hid_t h_plist_id,
#ifdef IO_SPEED_MEASUREMENT
MPI_Barrier(MPI_COMM_WORLD);
if(engine_rank == 0)
message("Copying for '%s' took %.3f %s." , props.name,
clocks_from_ticks(getticks() - tic), clocks_getunit());
if (engine_rank == 0)
message("Copying for '%s' took %.3f %s.", props.name,
clocks_from_ticks(getticks() - tic), clocks_getunit());
#endif
/* Create data space */
......@@ -324,9 +324,9 @@ void writeArray_chunk(struct engine* e, hid_t h_data, hid_t h_plist_id,
H5Sselect_none(h_filespace);
}
/* message("Writing %lld '%s', %zd elements = %zd bytes (int=%d) at offset
* %zd", N, props.name, N * props.dimension, N * props.dimension * typeSize, */
/* (int)(N * props.dimension * typeSize), offset); */
/* message("Writing %lld '%s', %zd elements = %zd bytes (int=%d) at offset
* %zd", N, props.name, N * props.dimension, N * props.dimension * typeSize, */
/* (int)(N * props.dimension * typeSize), offset); */
#ifdef IO_SPEED_MEASUREMENT
MPI_Barrier(MPI_COMM_WORLD);
......@@ -502,9 +502,9 @@ void writeArray(struct engine* e, hid_t grp, char* fileName, FILE* xmfFile,
#ifdef IO_SPEED_MEASUREMENT
MPI_Barrier(MPI_COMM_WORLD);
if(engine_rank == 0)
message("'%s' took %.3f %s." , props.name,
clocks_from_ticks(getticks() - tic), clocks_getunit());
if (engine_rank == 0)
message("'%s' took %.3f %s.", props.name,
clocks_from_ticks(getticks() - tic), clocks_getunit());
#endif
}
......@@ -847,7 +847,7 @@ void write_output_parallel(struct engine* e, const char* baseName,
/* Activate parallel i/o */
hid_t h_err = H5Pset_fapl_mpio(plist_id, comm, info);
if (h_err < 0) error("Error setting parallel i/o");
/* Align on 4k pages. */
h_err = H5Pset_alignment(plist_id, 1024, 4096);
if (h_err < 0) error("Error setting Hdf5 alignment");
......
src/partition.c
View file @ e5e905bd
......@@ -728,7 +728,7 @@ static void repart_edge_metis(int partweights, int bothweights, int timebins,
/* Scale to the METIS range. */
double wscale = 1.0;
if ((wmaxv - wminv) > 0.0) {
wscale = (metis_maxweight - 1.0) / (wmaxv - wminv);
wscale = (metis_maxweight - 1.0) / (wmaxv - wminv);
}
for (int k = 0; k < nr_cells; k++) {
weights_v[k] = (weights_v[k] - wminv) * wscale + 1.0;
......
src/runner_doiact_vec.c
View file @ e5e905bd
......@@ -397,15 +397,13 @@ __attribute__((always_inline)) INLINE static void populate_max_index_no_cache(
* @param max_active_bin The largest time-bin active during this step.
*/
__attribute__((always_inline)) INLINE static void
populate_max_index_no_cache_force(const struct cell *ci, const struct cell *cj,
const struct entry *restrict sort_i,
const struct entry *restrict sort_j,
const float dx_max, const float rshift,
const double hi_max_raw,
const double hj_max_raw, const double h_max,
const double di_max, const double dj_min, int *max_index_i,
int *max_index_j, int *init_pi, int *init_pj,
const timebin_t max_active_bin) {
populate_max_index_no_cache_force(
const struct cell *ci, const struct cell *cj,
const struct entry *restrict sort_i, const struct entry *restrict sort_j,
const float dx_max, const float rshift, const double hi_max_raw,
const double hj_max_raw, const double h_max, const double di_max,
const double dj_min, int *max_index_i, int *max_index_j, int *init_pi,
int *init_pj, const timebin_t max_active_bin) {
const struct part *restrict parts_i = ci->parts;
const struct part *restrict parts_j = cj->parts;
......@@ -468,7 +466,7 @@ populate_max_index_no_cache_force(const struct cell *ci, const struct cell *cj,
last_pj = -1;
active_id = last_pj;
while (last_pj < cj->count &&
sort_j[last_pj + 1].d - h_max - dx_max < di_max) {
sort_j[last_pj + 1].d - h_max - dx_max < di_max) {
last_pj++;
/* Store the index of the particle if it is active. */
if (part_is_active_no_debug(&parts_j[sort_j[last_pj].i], max_active_bin))
......@@ -668,15 +666,17 @@ __attribute__((always_inline)) INLINE void runner_doself1_density_vec(
#ifdef DEBUG_INTERACTIONS_SPH
for (int bit_index = 0; bit_index < VEC_SIZE; bit_index++) {
if (doi_mask & (1 << bit_index)) {
if(pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] = parts[pjd + bit_index].id;
if (doi_mask & (1 << bit_index)) {
if (pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] =
parts[pjd + bit_index].id;
++pi->num_ngb_density;
}
if (doi_mask2 & (1 << bit_index)) {
if(pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] = parts[pjd + VEC_SIZE + bit_index].id;
if (doi_mask2 & (1 << bit_index)) {
if (pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] =
parts[pjd + VEC_SIZE + bit_index].id;
++pi->num_ngb_density;
}
}
......@@ -893,14 +893,16 @@ __attribute__((always_inline)) INLINE void runner_doself_subset_density_vec(
#ifdef DEBUG_INTERACTIONS_SPH
for (int bit_index = 0; bit_index < VEC_SIZE; bit_index++) {
if (doi_mask & (1 << bit_index)) {
if(pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] = parts[pjd + bit_index].id;
if (pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] =
parts[pjd + bit_index].id;
++pi->num_ngb_density;
}
if (doi_mask2 & (1 << bit_index)) {
if(pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] = parts[pjd + VEC_SIZE + bit_index].id;
if (pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] =
parts[pjd + VEC_SIZE + bit_index].id;
++pi->num_ngb_density;
}
}
......@@ -1113,7 +1115,7 @@ __attribute__((always_inline)) INLINE void runner_doself2_force_vec(
#ifdef DEBUG_INTERACTIONS_SPH
for (int bit_index = 0; bit_index < VEC_SIZE; bit_index++) {
if (vec_is_mask_true(v_doi_mask) & (1 << bit_index)) {
if(pi->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
if (pi->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_force[pi->num_ngb_force] = parts[pjd + bit_index].id;
++pi->num_ngb_force;
}
......@@ -1362,9 +1364,10 @@ void runner_dopair1_density_vec(struct runner *r, struct cell *ci,
#ifdef DEBUG_INTERACTIONS_SPH
for (int bit_index = 0; bit_index < VEC_SIZE; bit_index++) {
if (vec_is_mask_true(v_doi_mask) & (1 << bit_index)) {
if(pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] = parts_j[sort_j[pjd + bit_index].i].id;
if (vec_is_mask_true(v_doi_mask) & (1 << bit_index)) {
if (pi->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_density[pi->num_ngb_density] =
parts_j[sort_j[pjd + bit_index].i].id;
++pi->num_ngb_density;
}
}
......@@ -1487,9 +1490,10 @@ void runner_dopair1_density_vec(struct runner *r, struct cell *ci,
#ifdef DEBUG_INTERACTIONS_SPH
for (int bit_index = 0; bit_index < VEC_SIZE; bit_index++) {
if (vec_is_mask_true(v_doj_mask) & (1 << bit_index)) {
if(pj->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pj->ids_ngbs_density[pj->num_ngb_density] = parts_i[sort_i[ci_cache_idx + first_pi + bit_index].i].id;
if (vec_is_mask_true(v_doj_mask) & (1 << bit_index)) {
if (pj->num_ngb_density < MAX_NUM_OF_NEIGHBOURS)
pj->ids_ngbs_density[pj->num_ngb_density] =
parts_i[sort_i[ci_cache_idx + first_pi + bit_index].i].id;
++pj->num_ngb_density;
}
}
......@@ -1634,9 +1638,9 @@ void runner_dopair2_force_vec(struct runner *r, struct cell *ci,
/* Also find the first pi that interacts with any particle in cj and the last
* pj that interacts with any particle in ci. */
populate_max_index_no_cache_force(ci, cj, sort_i, sort_j, dx_max, rshift,
hi_max_raw, hj_max_raw, h_max,
di_max, dj_min, max_index_i, max_index_j,
&first_pi, &last_pj, max_active_bin);
hi_max_raw, hj_max_raw, h_max, di_max,
dj_min, max_index_i, max_index_j, &first_pi,
&last_pj, max_active_bin);
/* Limits of the outer loops. */
const int first_pi_loop = first_pi;
......@@ -1748,8 +1752,9 @@ void runner_dopair2_force_vec(struct runner *r, struct cell *ci,
#ifdef DEBUG_INTERACTIONS_SPH
for (int bit_index = 0; bit_index < VEC_SIZE; bit_index++) {
if (vec_is_mask_true(v_doi_mask) & (1 << bit_index)) {
if(pi->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_force[pi->num_ngb_force] = parts_j[sort_j[pjd + bit_index].i].id;
if (pi->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
pi->ids_ngbs_force[pi->num_ngb_force] =
parts_j[sort_j[pjd + bit_index].i].id;
++pi->num_ngb_force;
}
}
......@@ -1883,8 +1888,9 @@ void runner_dopair2_force_vec(struct runner *r, struct cell *ci,
#ifdef DEBUG_INTERACTIONS_SPH
for (int bit_index = 0; bit_index < VEC_SIZE; bit_index++) {
if (vec_is_mask_true(v_doj_mask) & (1 << bit_index)) {
if(pj->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
pj->ids_ngbs_force[pj->num_ngb_force] = parts_i[sort_i[ci_cache_idx + first_pi + bit_index].i].id;
if (pj->num_ngb_force < MAX_NUM_OF_NEIGHBOURS)
pj->ids_ngbs_force[pj->num_ngb_force] =
parts_i[sort_i[ci_cache_idx + first_pi + bit_index].i].id;
++pj->num_ngb_force;
}
}
......
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