Merge remote-tracking branch 'origin/master' into mpi-logger

.gitignore

Makefile.am

README

README.md

configure.ac

doc/Doxyfile.in

doc/RTD/source/AnalysisTools/index.rst

doc/RTD/source/CommandLineOptions/index.rst

doc/RTD/source/GettingStarted/compiling_code.rst

examples/EAGLE_ICs/EAGLE_12/eagle_12.yml

examples/EAGLE_ICs/EAGLE_25/eagle_25.yml

examples/EAGLE_ICs/EAGLE_50/eagle_50.yml

examples/EAGLE_low_z/EAGLE_100/eagle_100.yml

examples/EAGLE_low_z/EAGLE_12/eagle_12.yml

examples/EAGLE_low_z/EAGLE_25/eagle_25.yml

examples/EAGLE_low_z/EAGLE_50/eagle_50.yml

examples/EAGLE_low_z/EAGLE_6/eagle_6.yml

examples/main.c

examples/parameter_example.yml

logger/Makefile.am