Revert "Revert "Merge branch 'master' into 'updated_MAC'""

README

README.md

configure.ac

doc/RTD/source/CommandLineOptions/index.rst

doc/RTD/source/ImplementationDetails/index.rst

doc/RTD/source/LineOfSights/index.rst

doc/RTD/source/ParameterFiles/parameter_description.rst

doc/RTD/source/index.rst

doc/RTD/source/random.rst

examples/EAGLE_ICs/EAGLE_12/eagle_12.yml

examples/EAGLE_ICs/EAGLE_12/run.sh

examples/EAGLE_ICs/EAGLE_25/eagle_25.yml

examples/EAGLE_ICs/EAGLE_25/run.sh

examples/EAGLE_ICs/EAGLE_50/eagle_50.yml

examples/EAGLE_ICs/EAGLE_50/run.sh

examples/EAGLE_ICs/EAGLE_50_low_res/README

examples/EAGLE_ICs/EAGLE_50_low_res/eagle_50.yml

examples/EAGLE_ICs/EAGLE_50_low_res/getIC.sh

examples/EAGLE_ICs/EAGLE_50_low_res/output_list.txt

examples/EAGLE_ICs/EAGLE_50_low_res/run.sh