Documentation fixes

doc/Doxyfile.in

@@ -763,7 +763,7 @@ INPUT                  =  @top_srcdir@ @top_srcdir@/src @top_srcdir@/tests @top_
 INPUT		       += @top_srcdir@/src/hydro/Minimal
 INPUT		       += @top_srcdir@/src/gravity/Default
 INPUT		       += @top_srcdir@/src/riemann
-INPUT		       += @top_srcdir@/src/cooling/const
+INPUT		       += @top_srcdir@/src/cooling/const_lambda
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses

examples/CoolingBox/makeICbig.py

-###############################################################################
- # This file is part of SWIFT.
- # Copyright (c) 2016 Matthieu Schaller (matthieu.schaller@durham.ac.uk)
- # 
- # This program is free software: you can redistribute it and/or modify
- # it under the terms of the GNU Lesser General Public License as published
- # by the Free Software Foundation, either version 3 of the License, or
- # (at your option) any later version.
- # 
- # This program is distributed in the hope that it will be useful,
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- # GNU General Public License for more details.
- # 
- # You should have received a copy of the GNU Lesser General Public License
- # along with this program.  If not, see <http://www.gnu.org/licenses/>.
- # 
- ##############################################################################
-
-import h5py
-import sys
-from numpy import *
-
-# Generates a swift IC file containing a cartesian distribution of particles
-# at a constant density and pressure in a cubic box
-
-# Parameters
-periodic= 1           # 1 For periodic box
-boxSize = 1.
-L = int(sys.argv[1])  # Number of particles along one axis
-N = int(sys.argv[2])  # Write N particles at a time to avoid requiring a lot of RAM
-rho = 2.              # Density
-P = 1.                # Pressure
-gamma = 5./3.         # Gas adiabatic index
-eta = 1.2349      # 48 ngbs with cubic spline kernel
-fileName = "uniformBox_%d.hdf5"%L
-
-#---------------------------------------------------
-numPart = L**3
-mass = boxSize**3 * rho / numPart
-internalEnergy = P / ((gamma - 1.)*rho)
-
-#---------------------------------------------------
-
-n_iterations = numPart / N
-remainder = numPart % N
-
-print "Writing", numPart, "in", n_iterations, "iterations of size", N, "and a remainder of", remainder
-
-#---------------------------------------------------
-
-#File
-file = h5py.File(fileName, 'w')
-
-# Header
-grp = file.create_group("/Header")
-grp.attrs["BoxSize"] = boxSize
-grp.attrs["NumPart_Total"] =  [numPart % (long(1)<<32), 0, 0, 0, 0, 0]
-grp.attrs["NumPart_Total_HighWord"] = [numPart / (long(1)<<32), 0, 0, 0, 0, 0]
-grp.attrs["NumPart_ThisFile"] = [numPart, 0, 0, 0, 0, 0]
-grp.attrs["Time"] = 0.0
-grp.attrs["NumFilesPerSnapshot"] = 1
-grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
-grp.attrs["Flag_Entropy_ICs"] = 0
-
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = periodic
-
-#Units
-grp = file.create_group("/Units")
-grp.attrs["Unit length in cgs (U_L)"] = 1.
-grp.attrs["Unit mass in cgs (U_M)"] = 1.
-grp.attrs["Unit time in cgs (U_t)"] = 1.
-grp.attrs["Unit current in cgs (U_I)"] = 1.
-grp.attrs["Unit temperature in cgs (U_T)"] = 1.
-
-
-#Particle group
-grp = file.create_group("/PartType0")
-
-# First create the arrays in the file
-ds_v = grp.create_dataset('Velocities', (numPart, 3), 'f', chunks=True, compression="gzip")
-ds_m = grp.create_dataset('Masses', (numPart,1), 'f', chunks=True, compression="gzip")
-ds_h = grp.create_dataset('SmoothingLength', (numPart,1), 'f', chunks=True, compression="gzip")
-ds_u = grp.create_dataset('InternalEnergy', (numPart,1), 'f', chunks=True, compression="gzip")
-ds_id = grp.create_dataset('ParticleIDs', (numPart, 1), 'L', chunks=True, compression="gzip")
-ds_x = grp.create_dataset('Coordinates', (numPart, 3), 'd', chunks=True, compression="gzip")
-
-# Now loop and create parts of the dataset
-offset = 0
-for n in range(n_iterations):
-    v  = zeros((N, 3))
-    ds_v[offset:offset+N,:] = v
-    v = zeros(1)
-
-    m = full((N, 1), mass)
-    ds_m[offset:offset+N] = m
-    m = zeros(1)
-
-    h = full((N, 1), eta * boxSize / L)
-    ds_h[offset:offset+N] = h
-    h = zeros(1)
-
-    u = full((N, 1), internalEnergy)
-    ds_u[offset:offset+N] = u
-    u = zeros(1)
-
-    ids = linspace(offset, offset+N, N, endpoint=False).reshape((N,1))
-    ds_id[offset:offset+N] = ids + 1
-    x      = ids % L;
-    y      = ((ids - x) / L) % L;
-    z      = (ids - x - L * y) / L**2;
-    ids    = zeros(1)
-    coords = zeros((N, 3))
-    coords[:,0] = z[:,0] * boxSize / L + boxSize / (2*L)
-    coords[:,1] = y[:,0] * boxSize / L + boxSize / (2*L)
-    coords[:,2] = x[:,0] * boxSize / L + boxSize / (2*L)
-    ds_x[offset:offset+N,:] = coords
-    coords  = zeros((1,3))
-
-    offset += N
-    print "Done", offset,"/", numPart, "(%.1f %%)"%(100*(float)(offset)/numPart)
-
-# And now, the remainder
-v  = zeros((remainder, 3))
-ds_v[offset:offset+remainder,:] = v
-v = zeros(1)
-
-m = full((remainder, 1), mass)
-ds_m[offset:offset+remainder] = m
-m = zeros(1)
-
-h = full((remainder, 1), eta * boxSize / L)
-ds_h[offset:offset+remainder] = h
-h = zeros(1)
-
-u = full((remainder, 1), internalEnergy)
-ds_u[offset:offset+remainder] = u
-u = zeros(1)
-
-ids = linspace(offset, offset+remainder, remainder, endpoint=False).reshape((remainder,1))
-ds_id[offset:offset+remainder] = ids + 1
-x      = ids % L;
-y      = ((ids - x) / L) % L;
-z      = (ids - x - L * y) / L**2;
-coords = zeros((remainder, 3))
-coords[:,0] = z[:,0] * boxSize / L + boxSize / (2*L)
-coords[:,1] = y[:,0] * boxSize / L + boxSize / (2*L)
-coords[:,2] = x[:,0] * boxSize / L + boxSize / (2*L)
-ods_x[offset:offset+remainder,:] = coords
-
-print "Done", offset+remainder,"/", numPart
-
-
-
-
-file.close()

src/cooling/const_lambda/cooling.h

@@ -142,7 +142,7 @@ __attribute__((always_inline)) INLINE static void cooling_cool_part(
  * @param cooling The #cooling_data used in the run.
  * @param phys_const The physical constants in internal units.
  * @param us The internal system of units.
- * @param Pointer to the particle data.
+ * @param p Pointer to the particle data.
  */
 __attribute__((always_inline)) INLINE static float cooling_timestep(
     const struct cooling_data* cooling,