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Commit 7bd06f71 authored by Matthieu Schaller's avatar Matthieu Schaller
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Refactoed the i/o code to match the coding style of the rest of the code.

parent 4421af3e
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src/Makefile.am
View file @ 7bd06f71
......@@ -45,7 +45,7 @@ include_HEADERS = space.h runner.h queue.h task.h lock.h cell.h part.h const.h \
physical_constants.h physical_constants_cgs.h potential.h version.h \
hydro_properties.h riemann.h threadpool.h cooling.h cooling_struct.h sourceterms.h \
sourceterms_struct.h statistics.h memswap.h cache.h runner_doiact_vec.h profiler.h \
dump.h logger.h active.h timeline.h
dump.h logger.h active.h timeline.h xmf.h
# Common source files
AM_SOURCES = space.c runner.c queue.c task.c cell.c engine.c \
......@@ -54,7 +54,8 @@ AM_SOURCES = space.c runner.c queue.c task.c cell.c engine.c \
kernel_hydro.c tools.c part.c partition.c clocks.c parser.c \
physical_constants.c potential.c hydro_properties.c \
runner_doiact_fft.c threadpool.c cooling.c sourceterms.c \
statistics.c runner_doiact_vec.c profiler.c dump.c logger.c
statistics.c runner_doiact_vec.c profiler.c dump.c logger.c \
part_type.c xmf.c
# Include files for distribution, not installation.
nobase_noinst_HEADERS = align.h approx_math.h atomic.h cycle.h error.h inline.h kernel_hydro.h kernel_gravity.h \
......
src/common_io.c
View file @ 7bd06f71
......@@ -47,9 +47,6 @@
#include "units.h"
#include "version.h"
const char* particle_type_names[NUM_PARTICLE_TYPES] = {
"Gas", "DM", "Boundary", "Dummy", "Star", "BH"};
/**
* @brief Converts a C data type to the HDF5 equivalent.
*
......@@ -57,7 +54,7 @@ const char* particle_type_names[NUM_PARTICLE_TYPES] = {
* to change the exact storage types matching the code types in a transparent
*way.
*/
hid_t hdf5Type(enum DATA_TYPE type) {
hid_t io_hdf5_type(enum IO_DATA_TYPE type) {
switch (type) {
case INT:
......@@ -87,7 +84,7 @@ hid_t hdf5Type(enum DATA_TYPE type) {
/**
* @brief Returns the memory size of the data type
*/
size_t sizeOfType(enum DATA_TYPE type) {
size_t io_sizeof_type(enum IO_DATA_TYPE type) {
switch (type) {
case INT:
......@@ -119,7 +116,7 @@ size_t sizeOfType(enum DATA_TYPE type) {
*
* Returns an error if the type is not FLOAT or DOUBLE
*/
int isDoublePrecision(enum DATA_TYPE type) {
int io_is_double_precision(enum IO_DATA_TYPE type) {
switch (type) {
case FLOAT:
......@@ -142,7 +139,8 @@ int isDoublePrecision(enum DATA_TYPE type) {
*
* Calls #error() if an error occurs.
*/
void readAttribute(hid_t grp, char* name, enum DATA_TYPE type, void* data) {
void io_read_attribute(hid_t grp, char* name, enum IO_DATA_TYPE type,
void* data) {
hid_t h_attr = 0, h_err = 0;
h_attr = H5Aopen(grp, name, H5P_DEFAULT);
......@@ -150,7 +148,7 @@ void readAttribute(hid_t grp, char* name, enum DATA_TYPE type, void* data) {
error("Error while opening attribute '%s'", name);
}
h_err = H5Aread(h_attr, hdf5Type(type), data);
h_err = H5Aread(h_attr, io_hdf5_type(type), data);
if (h_err < 0) {
error("Error while reading attribute '%s'", name);
}
......@@ -169,8 +167,8 @@ void readAttribute(hid_t grp, char* name, enum DATA_TYPE type, void* data) {
*
* Calls #error() if an error occurs.
*/
void writeAttribute(hid_t grp, const char* name, enum DATA_TYPE type,
void* data, int num) {
void io_write_attribute(hid_t grp, const char* name, enum IO_DATA_TYPE type,
void* data, int num) {
hid_t h_space = 0, h_attr = 0, h_err = 0;
hsize_t dim[1] = {num};
......@@ -184,12 +182,12 @@ void writeAttribute(hid_t grp, const char* name, enum DATA_TYPE type,
error("Error while changing dataspace shape for attribute '%s'.", name);
}
h_attr = H5Acreate1(grp, name, hdf5Type(type), h_space, H5P_DEFAULT);
h_attr = H5Acreate1(grp, name, io_hdf5_type(type), h_space, H5P_DEFAULT);
if (h_attr < 0) {
error("Error while creating attribute '%s'.", name);
}
h_err = H5Awrite(h_attr, hdf5Type(type), data);
h_err = H5Awrite(h_attr, io_hdf5_type(type), data);
if (h_err < 0) {
error("Error while reading attribute '%s'.", name);
}
......@@ -208,8 +206,8 @@ void writeAttribute(hid_t grp, const char* name, enum DATA_TYPE type,
*
* Calls #error() if an error occurs.
*/
void writeStringAttribute(hid_t grp, const char* name, const char* str,
int length) {
void io_writeStringAttribute(hid_t grp, const char* name, const char* str,
int length) {
hid_t h_space = 0, h_attr = 0, h_err = 0, h_type = 0;
h_space = H5Screate(H5S_SCALAR);
......@@ -248,8 +246,8 @@ void writeStringAttribute(hid_t grp, const char* name, const char* str,
* @param name The name of the attribute
* @param data The value to write
*/
void writeAttribute_d(hid_t grp, const char* name, double data) {
writeAttribute(grp, name, DOUBLE, &data, 1);
void io_write_attribute_d(hid_t grp, const char* name, double data) {
io_write_attribute(grp, name, DOUBLE, &data, 1);
}
/**
......@@ -258,8 +256,8 @@ void writeAttribute_d(hid_t grp, const char* name, double data) {
* @param name The name of the attribute
* @param data The value to write
*/
void writeAttribute_f(hid_t grp, const char* name, float data) {
writeAttribute(grp, name, FLOAT, &data, 1);
void io_write_attribute_f(hid_t grp, const char* name, float data) {
io_write_attribute(grp, name, FLOAT, &data, 1);
}
/**
......@@ -269,8 +267,8 @@ void writeAttribute_f(hid_t grp, const char* name, float data) {
* @param data The value to write
*/
void writeAttribute_i(hid_t grp, const char* name, int data) {
writeAttribute(grp, name, INT, &data, 1);
void io_write_attribute_i(hid_t grp, const char* name, int data) {
io_write_attribute(grp, name, INT, &data, 1);
}
/**
......@@ -279,8 +277,8 @@ void writeAttribute_i(hid_t grp, const char* name, int data) {
* @param name The name of the attribute
* @param data The value to write
*/
void writeAttribute_l(hid_t grp, const char* name, long data) {
writeAttribute(grp, name, LONG, &data, 1);
void io_write_attribute_l(hid_t grp, const char* name, long data) {
io_write_attribute(grp, name, LONG, &data, 1);
}
/**
......@@ -289,8 +287,8 @@ void writeAttribute_l(hid_t grp, const char* name, long data) {
* @param name The name of the attribute
* @param str The string to write
*/
void writeAttribute_s(hid_t grp, const char* name, const char* str) {
writeStringAttribute(grp, name, str, strlen(str));
void io_write_attribute_s(hid_t grp, const char* name, const char* str) {
io_writeStringAttribute(grp, name, str, strlen(str));
}
/**
......@@ -300,7 +298,7 @@ void writeAttribute_s(hid_t grp, const char* name, const char* str) {
*
* If the 'Units' group does not exist in the ICs, cgs units will be assumed
*/
void readUnitSystem(hid_t h_file, struct UnitSystem* us) {
void io_read_UnitSystem(hid_t h_file, struct UnitSystem* us) {
hid_t h_grp = H5Gopen(h_file, "/Units", H5P_DEFAULT);
......@@ -318,14 +316,16 @@ void readUnitSystem(hid_t h_file, struct UnitSystem* us) {
}
/* Ok, Read the damn thing */
readAttribute(h_grp, "Unit length in cgs (U_L)", DOUBLE,
&us->UnitLength_in_cgs);
readAttribute(h_grp, "Unit mass in cgs (U_M)", DOUBLE, &us->UnitMass_in_cgs);
readAttribute(h_grp, "Unit time in cgs (U_t)", DOUBLE, &us->UnitTime_in_cgs);
readAttribute(h_grp, "Unit current in cgs (U_I)", DOUBLE,
&us->UnitCurrent_in_cgs);
readAttribute(h_grp, "Unit temperature in cgs (U_T)", DOUBLE,
&us->UnitTemperature_in_cgs);
io_read_attribute(h_grp, "Unit length in cgs (U_L)", DOUBLE,
&us->UnitLength_in_cgs);
io_read_attribute(h_grp, "Unit mass in cgs (U_M)", DOUBLE,
&us->UnitMass_in_cgs);
io_read_attribute(h_grp, "Unit time in cgs (U_t)", DOUBLE,
&us->UnitTime_in_cgs);
io_read_attribute(h_grp, "Unit current in cgs (U_I)", DOUBLE,
&us->UnitCurrent_in_cgs);
io_read_attribute(h_grp, "Unit temperature in cgs (U_T)", DOUBLE,
&us->UnitTemperature_in_cgs);
/* Clean up */
H5Gclose(h_grp);
......@@ -337,23 +337,23 @@ void readUnitSystem(hid_t h_file, struct UnitSystem* us) {
* @param us The UnitSystem to dump
* @param groupName The name of the HDF5 group to write to
*/
void writeUnitSystem(hid_t h_file, const struct UnitSystem* us,
const char* groupName) {
void io_write_UnitSystem(hid_t h_file, const struct UnitSystem* us,
const char* groupName) {
hid_t h_grpunit = 0;
h_grpunit = H5Gcreate1(h_file, groupName, 0);
if (h_grpunit < 0) error("Error while creating Unit System group");
writeAttribute_d(h_grpunit, "Unit mass in cgs (U_M)",
units_get_base_unit(us, UNIT_MASS));
writeAttribute_d(h_grpunit, "Unit length in cgs (U_L)",
units_get_base_unit(us, UNIT_LENGTH));
writeAttribute_d(h_grpunit, "Unit time in cgs (U_t)",
units_get_base_unit(us, UNIT_TIME));
writeAttribute_d(h_grpunit, "Unit current in cgs (U_I)",
units_get_base_unit(us, UNIT_CURRENT));
writeAttribute_d(h_grpunit, "Unit temperature in cgs (U_T)",
units_get_base_unit(us, UNIT_TEMPERATURE));
io_write_attribute_d(h_grpunit, "Unit mass in cgs (U_M)",
units_get_base_unit(us, UNIT_MASS));
io_write_attribute_d(h_grpunit, "Unit length in cgs (U_L)",
units_get_base_unit(us, UNIT_LENGTH));
io_write_attribute_d(h_grpunit, "Unit time in cgs (U_t)",
units_get_base_unit(us, UNIT_TIME));
io_write_attribute_d(h_grpunit, "Unit current in cgs (U_I)",
units_get_base_unit(us, UNIT_CURRENT));
io_write_attribute_d(h_grpunit, "Unit temperature in cgs (U_T)",
units_get_base_unit(us, UNIT_TEMPERATURE));
H5Gclose(h_grpunit);
}
......@@ -362,31 +362,32 @@ void writeUnitSystem(hid_t h_file, const struct UnitSystem* us,
* @brief Writes the code version to the file
* @param h_file The (opened) HDF5 file in which to write
*/
void writeCodeDescription(hid_t h_file) {
void io_write_code_description(hid_t h_file) {
hid_t h_grpcode = 0;
h_grpcode = H5Gcreate1(h_file, "/Code", 0);
if (h_grpcode < 0) error("Error while creating code group");
writeAttribute_s(h_grpcode, "Code Version", package_version());
writeAttribute_s(h_grpcode, "Compiler Name", compiler_name());
writeAttribute_s(h_grpcode, "Compiler Version", compiler_version());
writeAttribute_s(h_grpcode, "Git Branch", git_branch());
writeAttribute_s(h_grpcode, "Git Revision", git_revision());
writeAttribute_s(h_grpcode, "Git Date", git_date());
writeAttribute_s(h_grpcode, "Configuration options", configuration_options());
writeAttribute_s(h_grpcode, "CFLAGS", compilation_cflags());
writeAttribute_s(h_grpcode, "HDF5 library version", hdf5_version());
io_write_attribute_s(h_grpcode, "Code Version", package_version());
io_write_attribute_s(h_grpcode, "Compiler Name", compiler_name());
io_write_attribute_s(h_grpcode, "Compiler Version", compiler_version());
io_write_attribute_s(h_grpcode, "Git Branch", git_branch());
io_write_attribute_s(h_grpcode, "Git Revision", git_revision());
io_write_attribute_s(h_grpcode, "Git Date", git_date());
io_write_attribute_s(h_grpcode, "Configuration options",
configuration_options());
io_write_attribute_s(h_grpcode, "CFLAGS", compilation_cflags());
io_write_attribute_s(h_grpcode, "HDF5 library version", hdf5_version());
#ifdef HAVE_FFTW
writeAttribute_s(h_grpcode, "FFTW library version", fftw3_version());
io_write_attribute_s(h_grpcode, "FFTW library version", fftw3_version());
#endif
#ifdef WITH_MPI
writeAttribute_s(h_grpcode, "MPI library", mpi_version());
io_write_attribute_s(h_grpcode, "MPI library", mpi_version());
#ifdef HAVE_METIS
writeAttribute_s(h_grpcode, "METIS library version", metis_version());
io_write_attribute_s(h_grpcode, "METIS library version", metis_version());
#endif
#else
writeAttribute_s(h_grpcode, "MPI library", "Non-MPI version of SWIFT");
io_write_attribute_s(h_grpcode, "MPI library", "Non-MPI version of SWIFT");
#endif
H5Gclose(h_grpcode);
}
......@@ -406,170 +407,6 @@ void writeCodeDescription(hid_t h_file) {
*
* @todo Use a proper XML library to avoid stupid copies.
*/
FILE* prepareXMFfile(const char* baseName) {
char buffer[1024];
char fileName[FILENAME_BUFFER_SIZE];
char tempFileName[FILENAME_BUFFER_SIZE];
snprintf(fileName, FILENAME_BUFFER_SIZE, "%s.xmf", baseName);
snprintf(tempFileName, FILENAME_BUFFER_SIZE, "%s_temp.xmf", baseName);
FILE* xmfFile = fopen(fileName, "r");
FILE* tempFile = fopen(tempFileName, "w");
if (xmfFile == NULL) error("Unable to open current XMF file.");
if (tempFile == NULL) error("Unable to open temporary file.");
/* First we make a temporary copy of the XMF file and count the lines */
int counter = 0;
while (fgets(buffer, 1024, xmfFile) != NULL) {
counter++;
fprintf(tempFile, "%s", buffer);
}
fclose(tempFile);
fclose(xmfFile);
/* We then copy the XMF file back up to the closing lines */
xmfFile = fopen(fileName, "w");
tempFile = fopen(tempFileName, "r");
if (xmfFile == NULL) error("Unable to open current XMF file.");
if (tempFile == NULL) error("Unable to open temporary file.");
int i = 0;
while (fgets(buffer, 1024, tempFile) != NULL && i < counter - 3) {
i++;
fprintf(xmfFile, "%s", buffer);
}
fprintf(xmfFile, "\n");
fclose(tempFile);
remove(tempFileName);
return xmfFile;
}
/**
* @brief Writes the begin of the XMF file
*
* @todo Exploit the XML nature of the XMF format to write a proper XML writer
*and simplify all the XMF-related stuff.
*/
void createXMFfile(const char* baseName) {
char fileName[FILENAME_BUFFER_SIZE];
snprintf(fileName, FILENAME_BUFFER_SIZE, "%s.xmf", baseName);
FILE* xmfFile = fopen(fileName, "w");
fprintf(xmfFile, "<?xml version=\"1.0\" ?> \n");
fprintf(xmfFile, "<!DOCTYPE Xdmf SYSTEM \"Xdmf.dtd\" []> \n");
fprintf(
xmfFile,
"<Xdmf xmlns:xi=\"http://www.w3.org/2003/XInclude\" Version=\"2.1\">\n");
fprintf(xmfFile, "<Domain>\n");
fprintf(xmfFile,
"<Grid Name=\"TimeSeries\" GridType=\"Collection\" "
"CollectionType=\"Temporal\">\n\n");
fprintf(xmfFile, "</Grid>\n");
fprintf(xmfFile, "</Domain>\n");
fprintf(xmfFile, "</Xdmf>\n");
fclose(xmfFile);
}
/**
* @brief Writes the part of the XMF entry presenting the geometry of the
*snapshot
*
* @param xmfFile The file to write in.
* @param hdfFileName The name of the HDF5 file corresponding to this output.
* @param time The current simulation time.
*/
void writeXMFoutputheader(FILE* xmfFile, char* hdfFileName, float time) {
/* Write end of file */
fprintf(xmfFile, "<!-- XMF description for file: %s -->\n", hdfFileName);
fprintf(xmfFile,
"<Grid GridType=\"Collection\" CollectionType=\"Spatial\">\n");
fprintf(xmfFile, "<Time Type=\"Single\" Value=\"%f\"/>\n", time);
}
/**
* @brief Writes the end of the XMF file (closes all open markups)
*
* @param xmfFile The file to write in.
* @param output The number of this output.
* @param time The current simulation time.
*/
void writeXMFoutputfooter(FILE* xmfFile, int output, float time) {
/* Write end of the section of this time step */
fprintf(xmfFile,
"\n</Grid> <!-- End of meta-data for output=%03i, time=%f -->\n",
output, time);
fprintf(xmfFile, "\n</Grid> <!-- timeSeries -->\n");
fprintf(xmfFile, "</Domain>\n");
fprintf(xmfFile, "</Xdmf>\n");
fclose(xmfFile);
}
void writeXMFgroupheader(FILE* xmfFile, char* hdfFileName, size_t N,
enum PARTICLE_TYPE ptype) {
fprintf(xmfFile, "\n<Grid Name=\"%s\" GridType=\"Uniform\">\n",
particle_type_names[ptype]);
fprintf(xmfFile,
"<Topology TopologyType=\"Polyvertex\" Dimensions=\"%zu\"/>\n", N);
fprintf(xmfFile, "<Geometry GeometryType=\"XYZ\">\n");
fprintf(xmfFile,
"<DataItem Dimensions=\"%zu 3\" NumberType=\"Double\" "
"Precision=\"8\" "
"Format=\"HDF\">%s:/PartType%d/Coordinates</DataItem>\n",
N, hdfFileName, (int)ptype);
fprintf(xmfFile,
"</Geometry>\n <!-- Done geometry for %s, start of particle fields "
"list -->\n",
particle_type_names[ptype]);
}
void writeXMFgroupfooter(FILE* xmfFile, enum PARTICLE_TYPE ptype) {
fprintf(xmfFile, "</Grid> <!-- End of meta-data for parttype=%s -->\n",
particle_type_names[ptype]);
}
/**
* @brief Writes the lines corresponding to an array of the HDF5 output
*
* @param xmfFile The file in which to write
* @param fileName The name of the HDF5 file associated to this XMF descriptor.
* @param partTypeGroupName The name of the group containing the particles in
*the HDF5 file.
* @param name The name of the array in the HDF5 file.
* @param N The number of particles.
* @param dim The dimension of the quantity (1 for scalars, 3 for vectors).
* @param type The type of the data to write.
*
* @todo Treat the types in a better way.
*/
void writeXMFline(FILE* xmfFile, const char* fileName,
const char* partTypeGroupName, const char* name, size_t N,
int dim, enum DATA_TYPE type) {
fprintf(xmfFile,
"<Attribute Name=\"%s\" AttributeType=\"%s\" Center=\"Node\">\n",
name, dim == 1 ? "Scalar" : "Vector");
if (dim == 1)
fprintf(xmfFile,
"<DataItem Dimensions=\"%zu\" NumberType=\"Double\" "
"Precision=\"%d\" Format=\"HDF\">%s:%s/%s</DataItem>\n",
N, type == FLOAT ? 4 : 8, fileName, partTypeGroupName, name);
else
fprintf(xmfFile,
"<DataItem Dimensions=\"%zu %d\" NumberType=\"Double\" "
"Precision=\"%d\" Format=\"HDF\">%s:%s/%s</DataItem>\n",
N, dim, type == FLOAT ? 4 : 8, fileName, partTypeGroupName, name);
fprintf(xmfFile, "</Attribute>\n");
}
/**
* @brief Prepare the DM particles (in gparts) read in for the addition of the
......@@ -581,7 +418,7 @@ void writeXMFline(FILE* xmfFile, const char* fileName,
* @param gparts The array of #gpart freshly read in.
* @param Ndm The number of DM particles read in.
*/
void prepare_dm_gparts(struct gpart* const gparts, size_t Ndm) {
void io_prepare_dm_gparts(struct gpart* const gparts, size_t Ndm) {
/* Let's give all these gparts a negative id */
for (size_t i = 0; i < Ndm; ++i) {
......@@ -607,9 +444,9 @@ void prepare_dm_gparts(struct gpart* const gparts, size_t Ndm) {
* @param Ngas The number of gas particles read in.
* @param Ndm The number of DM particles read in.
*/
void duplicate_hydro_gparts(struct part* const parts,
struct gpart* const gparts, size_t Ngas,
size_t Ndm) {
void io_duplicate_hydro_gparts(struct part* const parts,
struct gpart* const gparts, size_t Ngas,
size_t Ndm) {
for (size_t i = 0; i < Ngas; ++i) {
......@@ -645,9 +482,9 @@ void duplicate_hydro_gparts(struct part* const parts,
* @param Nstars The number of stars particles read in.
* @param Ndm The number of DM and gas particles read in.
*/
void duplicate_star_gparts(struct spart* const sparts,
struct gpart* const gparts, size_t Nstars,
size_t Ndm) {
void io_duplicate_star_gparts(struct spart* const sparts,
struct gpart* const gparts, size_t Nstars,
size_t Ndm) {
for (size_t i = 0; i < Nstars; ++i) {
......@@ -679,8 +516,8 @@ void duplicate_star_gparts(struct spart* const sparts,
* @param dmparts The array of #gpart containg DM particles to be filled.
* @param Ndm The number of DM particles.
*/
void collect_dm_gparts(const struct gpart* const gparts, size_t Ntot,
struct gpart* const dmparts, size_t Ndm) {
void io_collect_dm_gparts(const struct gpart* const gparts, size_t Ntot,
struct gpart* const dmparts, size_t Ndm) {
size_t count = 0;
......
src/common_io.h
View file @ 7bd06f71
......@@ -23,17 +23,22 @@
/* Config parameters. */
#include "../config.h"
#if defined(HAVE_HDF5)
/* Local includes. */
#include "part.h"
#include "units.h"
#define FIELD_BUFFER_SIZE 200
#define PARTICLE_GROUP_BUFFER_SIZE 50
#define FILENAME_BUFFER_SIZE 150
#if defined(HAVE_HDF5)
/**
* @brief The different types of data used in the GADGET IC files.
*
* (This is admittedly a poor substitute to C++ templates...)
*/
enum DATA_TYPE {
enum IO_DATA_TYPE {
INT,
LONG,
LONGLONG,
......@@ -45,68 +50,38 @@ enum DATA_TYPE {
CHAR
};
/**
* @brief The different particle types present in a GADGET IC file
*
*/
enum PARTICLE_TYPE {
GAS = 0,
DM = 1,
BOUNDARY = 2,
DUMMY = 3,
STAR = 4,
BH = 5,
NUM_PARTICLE_TYPES
};
extern const char* particle_type_names[];
#define FILENAME_BUFFER_SIZE 150
#define FIELD_BUFFER_SIZE 200
#define PARTICLE_GROUP_BUFFER_SIZE 50
hid_t hdf5Type(enum DATA_TYPE type);
size_t sizeOfType(enum DATA_TYPE type);
int isDoublePrecision(enum DATA_TYPE type);
void collect_dm_gparts(const struct gpart* const gparts, size_t Ntot,
struct gpart* const dmparts, size_t Ndm);
void prepare_dm_gparts(struct gpart* const gparts, size_t Ndm);
void duplicate_hydro_gparts(struct part* const parts,
struct gpart* const gparts, size_t Ngas,
size_t Ndm);
void duplicate_star_gparts(struct spart* const sparts,
struct gpart* const gparts, size_t Nstars,
size_t Ndm);
hid_t io_hdf5_type(enum IO_DATA_TYPE type);
size_t io_sizeof_type(enum IO_DATA_TYPE type);
int io_is_double_precision(enum IO_DATA_TYPE type);
void readAttribute(hid_t grp, char* name, enum DATA_TYPE type, void* data);
void io_read_attribute(hid_t grp, char* name, enum IO_DATA_TYPE type,
void* data);
void writeAttribute(hid_t grp, const char* name, enum DATA_TYPE type,
void* data, int num);
void io_write_attribute(hid_t grp, const char* name, enum IO_DATA_TYPE type,
void* data, int num);
void writeAttribute_d(hid_t grp, const char* name, double data);
void writeAttribute_f(hid_t grp, const char* name, float data);
void writeAttribute_i(hid_t grp, const char* name, int data);
void writeAttribute_l(hid_t grp, const char* name, long data);
void writeAttribute_s(hid_t grp, const char* name, const char* str);
void io_write_attribute_d(hid_t grp, const char* name, double data);
void io_write_attribute_f(hid_t grp, const char* name, float data);
void io_write_attribute_i(hid_t grp, const char* name, int data);
void io_write_attribute_l(hid_t grp, const char* name, long data);
void io_write_attribute_s(hid_t grp, const char* name, const char* str);
void createXMFfile(const char* baseName);
FILE* prepareXMFfile(const char* baseName);
void writeXMFoutputheader(FILE* xmfFile, char* hdfFileName, float time);
void writeXMFoutputfooter(FILE* xmfFile, int outputCount, float time);
void writeXMFgroupheader(FILE* xmfFile, char* hdfFileName, size_t N,
enum PARTICLE_TYPE ptype);
void writeXMFgroupfooter(FILE* xmfFile, enum PARTICLE_TYPE ptype);
void writeXMFline(FILE* xmfFile, const char* fileName,
const char* partTypeGroupName, const char* name, size_t N,
int dim, enum DATA_TYPE type);
void io_write_code_description(hid_t h_file);
void writeCodeDescription(hid_t h_file);
void readUnitSystem(hid_t h_file, struct UnitSystem* us);
void writeUnitSystem(hid_t h_grp, const struct UnitSystem* us,
const char* groupName);
void io_read_UnitSystem(hid_t h_file, struct UnitSystem* us);
void io_write_UnitSystem(hid_t h_grp, const struct UnitSystem* us,
const char* groupName);
#endif /* defined HDF5 */
void io_collect_dm_gparts(const struct gpart* const gparts, size_t Ntot,
struct gpart* const dmparts, size_t Ndm);
void io_prepare_dm_gparts(struct gpart* const gparts, size_t Ndm);
void io_duplicate_hydro_gparts(struct part* const parts,
struct gpart* const gparts, size_t Ngas,
size_t Ndm);
void io_duplicate_star_gparts(struct spart* const sparts,
struct gpart* const gparts, size_t Nstars,
size_t Ndm);
#endif /* SWIFT_COMMON_IO_H */
src/hydro/Default/hydro_io.h
View file @ 7bd06f71
......@@ -91,21 +91,25 @@ void hydro_write_particles(struct part* parts, struct io_props* list,
void writeSPHflavour(hid_t h_grpsph) {
/* Viscosity and thermal conduction */
writeAttribute_s(h_grpsph, "Thermal Conductivity Model",