Merge branch 'master' into pack_foreign_gpart

examples/RadiativeTransferTests/CosmoCoolingTest/getReference.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ReferenceSolutions/CosmoRTCoolingTestReference.txt
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ReferenceSolutions/CosmoRTCoolingTestReference.txt

examples/RadiativeTransferTests/CosmoPropagationTest_3D/getGlass.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassCube_64.hdf5
-#wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassCube_128.hdf5
\ No newline at end of file
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassCube_64.hdf5
+#wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassCube_128.hdf5

examples/RadiativeTransferTests/IonMassFractionAdvectionTest_2D/getGlass.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassPlane_64.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassPlane_64.hdf5

examples/RadiativeTransferTests/IonizationEquilibriumICSetupTest/getReference.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ReferenceSolutions/IonizationEquilibriumICSetupTestReference.txt
-
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ReferenceSolutions/IonizationEquilibriumICSetupTestReference.txt

examples/RadiativeTransferTests/StromgrenSphere_2D/getGlass.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassPlane_128.hdf5
\ No newline at end of file
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassPlane_128.hdf5

examples/RadiativeTransferTests/StromgrenSphere_3D/getGlass.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassCube_64.hdf5
-#wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassCube_128.hdf5
\ No newline at end of file
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassCube_64.hdf5
+#wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/glassCube_128.hdf5

examples/SantaBarbara/SantaBarbara-128/getIC.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/SantaBarbara/SantaBarbara_128.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/SantaBarbara/SantaBarbara_128.hdf5

examples/SantaBarbara/SantaBarbara-256/getIC.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/SantaBarbara/SantaBarbara_256.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/SantaBarbara/SantaBarbara_256.hdf5

examples/SinkParticles/HomogeneousBox/getChemistryTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/FeedbackTables/POPIIsw.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/FeedbackTables/POPIIsw.h5

examples/SinkParticles/HomogeneousBox/getDebuggingICs.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/SinkParticles/snapshot_0003restart.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/SinkParticles/snapshot_0003restart.hdf5

examples/SinkParticles/HomogeneousBox/getGrackleCoolingTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012_high_density.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012_high_density.h5

examples/SinkParticles/HomogeneousBoxSinkParticles/getChemistryTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/FeedbackTables/POPIIsw.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/FeedbackTables/POPIIsw.h5

examples/SinkParticles/HomogeneousBoxSinkParticles/getGrackleCoolingTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5

examples/SinkParticles/PlummerSphere/getChemistryTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/FeedbackTables/POPIIsw.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/FeedbackTables/POPIIsw.h5

examples/SinkParticles/PlummerSphere/getGrackleCoolingTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5

examples/SinkParticles/PlummerSphere/run.sh

@@ -3,27 +3,22 @@
 # make run.sh fail if a subcommand fails
 set -e
 
-if [ ! -e test_sink.hdf5 ]
-then
+if [ ! -e test_sink.hdf5 ]; then
     echo "Fetching initial conditions to run the example..."
-    wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/test_sink.hdf5
+    wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/test_sink.hdf5
 fi
 
-
 # Get the Grackle cooling table
-if [ ! -e CloudyData_UVB=HM2012.h5 ]
-then
+if [ ! -e CloudyData_UVB=HM2012.h5 ]; then
     echo "Fetching the Cloudy tables required by Grackle..."
     ./getGrackleCoolingTable.sh
 fi
 
-
-if [ ! -e POPIIsw.h5 ]
-then
+if [ ! -e POPIIsw.h5 ]; then
     echo "Fetching the chemistry tables..."
     ./getChemistryTable.sh
 fi
 
 printf "Running simulation..."
 
-../../../swift --hydro --sinks --stars --self-gravity --feedback --cooling --threads=1 params.yml 2>&1 | tee output.log 
+../../../swift --hydro --sinks --stars --self-gravity --feedback --cooling --threads=1 params.yml 2>&1 | tee output.log

examples/SmallCosmoVolume/SmallCosmoVolume_DM/getIC.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/small_cosmo_volume.hdf5
-
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/small_cosmo_volume.hdf5

examples/SmallCosmoVolume/SmallCosmoVolume_Snipshots/getIC.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/small_cosmo_volume.hdf5
-
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/small_cosmo_volume.hdf5

examples/SmallCosmoVolume/SmallCosmoVolume_VELOCIraptor/getIC.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/small_cosmo_volume.hdf5
-
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/small_cosmo_volume.hdf5

examples/SmallCosmoVolume/SmallCosmoVolume_cooling/getCoolingTables.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/EAGLE/coolingtables.tar.gz
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/EAGLE/coolingtables.tar.gz
 tar -xvzf coolingtables.tar.gz