Merge branch 'master' into pack_foreign_gpart

examples/IdealisedCluster/getEaglePhotometryTable.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/photometry.tar.gz
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/photometry.tar.gz
 tar -xf photometry.tar.gz

examples/IdealisedCluster/getPS2020CoolingTables.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/COLIBRE/UV_dust1_CR1_G1_shield1.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/COLIBRE/UV_dust1_CR1_G1_shield1.hdf5

examples/IdealisedCluster/getYieldTable.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/yieldtables.tar.gz
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/yieldtables.tar.gz
 tar -xf yieldtables.tar.gz

examples/IsolatedGalaxy/IsolatedGalaxy_NFW_MN/getIC.sh

-#!/bin/bash 
+#!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/Isolated_NFW_MN.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/Isolated_NFW_MN.hdf5

examples/IsolatedGalaxy/IsolatedGalaxy_dmparticles/getIC.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/3e11-star-only-DM-halo-galaxy.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/3e11-star-only-DM-halo-galaxy.hdf5

examples/IsolatedGalaxy/IsolatedGalaxy_feedback/getEagleCoolingTable.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/EAGLE/coolingtables.tar.gz
-tar -xf coolingtables.tar.gz 
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/EAGLE/coolingtables.tar.gz
+tar -xf coolingtables.tar.gz

examples/IsolatedGalaxy/IsolatedGalaxy_feedback/getEaglePhotometryTable.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/photometry.tar.gz
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/photometry.tar.gz
 tar -xf photometry.tar.gz

examples/IsolatedGalaxy/IsolatedGalaxy_feedback/getIC.sh

-#!/bin/bash 
+#!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/lowres8.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/lowres8.hdf5
 
 # Initial conditions from Nobels et al. arXiv:2309.13750
-#wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies_COLIBRE/M5_disk.hdf5
-#wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies_COLIBRE/M6_disk.hdf5
+#wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies_COLIBRE/M5_disk.hdf5
+#wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies_COLIBRE/M6_disk.hdf5

examples/IsolatedGalaxy/IsolatedGalaxy_feedback/getPS2020CoolingTables.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/COLIBRE/UV_dust1_CR1_G1_shield1.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/COLIBRE/UV_dust1_CR1_G1_shield1.hdf5

examples/IsolatedGalaxy/IsolatedGalaxy_feedback/getYieldTable.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/yieldtables.tar.gz
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/yieldtables.tar.gz
 tar -xf yieldtables.tar.gz

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/AGORA/getGrackleCoolingTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/AGORA/run.sh

@@ -3,20 +3,17 @@
 # make run.sh fail if a subcommand fails
 set -e
 
-if [ ! -e galaxy_multi_component.hdf5 ]
-then
+if [ ! -e galaxy_multi_component.hdf5 ]; then
     echo "Fetching initial conditions to run the example..."
-    wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/galaxy_multi_component.hdf5
+    wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/galaxy_multi_component.hdf5
 fi
 
 # Get the Grackle cooling table
-if [ ! -e CloudyData_UVB=HM2012.h5 ]
-then
+if [ ! -e CloudyData_UVB=HM2012.h5 ]; then
     echo "Fetching the Cloudy tables required by Grackle..."
     ./getGrackleCoolingTable.sh
 fi
 
-
 printf "Running simulation..."
 
-../../../../swift --hydro --stars --star-formation --self-gravity --feedback --cooling --threads=14 params.yml 2>&1 | tee output.log 
+../../../../swift --hydro --stars --star-formation --self-gravity --feedback --cooling --threads=14 params.yml 2>&1 | tee output.log

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/EAGLE/getEagleCoolingTable.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/EAGLE/coolingtables.tar.gz
-tar -xf coolingtables.tar.gz 
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/EAGLE/coolingtables.tar.gz
+tar -xf coolingtables.tar.gz

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/EAGLE/getEaglePhotometryTable.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/photometry.tar.gz
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/photometry.tar.gz
 tar -xf photometry.tar.gz

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/EAGLE/getPS2020CoolingTables.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/COLIBRE/UV_dust1_CR1_G1_shield1.hdf5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/COLIBRE/UV_dust1_CR1_G1_shield1.hdf5

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/EAGLE/getYieldTable.sh

 #!/bin/bash
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/yieldtables.tar.gz
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/YieldTables/EAGLE/yieldtables.tar.gz
 tar -xf yieldtables.tar.gz

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/EAGLE/run.sh

@@ -3,32 +3,26 @@
 # make run.sh fail if a subcommand fails
 set -e
 
-if [ ! -e galaxy_multi_component.hdf5 ]
-then
+if [ ! -e galaxy_multi_component.hdf5 ]; then
     echo "Fetching initial conditions to run the example..."
-    wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/galaxy_multi_component.hdf5
+    wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/galaxy_multi_component.hdf5
 fi
 
-if [ ! -e coolingtables ] 
-then     
+if [ ! -e coolingtables ]; then
     echo "Fetching EAGLE cooling tables for the isolated galaxy example..."
     ./getEagleCoolingTable.sh
 fi
 
-if [ ! -e yieldtables ] 
-then     
+if [ ! -e yieldtables ]; then
     echo "Fetching EAGLE stellar yield tables for the isolated galaxy example..."
     ./getYieldTable.sh
 fi
 
-if [ ! -e photometry ]
-then
+if [ ! -e photometry ]; then
     echo "Fetching EAGLE photometry tables..."
     ./getEaglePhotometryTable.sh
 fi
 
-
-
 printf "Running simulation..."
 
 ../../../../swift --threads=14 --feedback --self-gravity --stars --star-formation --cooling --hydro --limiter --sync params.yml 2>&1 | tee output.log

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/GEAR/getChemistryTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/FeedbackTables/POPIIsw.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/FeedbackTables/POPIIsw.h5

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/GEAR/getGrackleCoolingTable.sh

 #!/bin/bash
 
-wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5
+wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/CoolingTables/CloudyData_UVB=HM2012.h5

examples/IsolatedGalaxy/IsolatedGalaxy_multi_component/GEAR/run.sh

@@ -3,27 +3,22 @@
 # make run.sh fail if a subcommand fails
 set -e
 
-if [ ! -e galaxy_multi_component.hdf5 ]
-then
+if [ ! -e galaxy_multi_component.hdf5 ]; then
     echo "Fetching initial conditions to run the example..."
-    wget http://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/galaxy_multi_component.hdf5
+    wget https://virgodb.cosma.dur.ac.uk/swift-webstorage/ICs/IsolatedGalaxies/galaxy_multi_component.hdf5
 fi
 
-
 # Get the Grackle cooling table
-if [ ! -e CloudyData_UVB=HM2012.h5 ]
-then
+if [ ! -e CloudyData_UVB=HM2012.h5 ]; then
     echo "Fetching the Cloudy tables required by Grackle..."
     ./getGrackleCoolingTable.sh
 fi
 
-
-if [ ! -e POPIIsw.h5 ]
-then
+if [ ! -e POPIIsw.h5 ]; then
     echo "Fetching the chemistry tables..."
     ./getChemistryTable.sh
 fi
 
 printf "Running simulation..."
 
-../../../../swift --hydro --stars --star-formation --self-gravity --feedback --cooling --threads=14 params.yml 2>&1 | tee output.log 
+../../../../swift --hydro --stars --star-formation --self-gravity --feedback --cooling --threads=14 params.yml 2>&1 | tee output.log