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Matthieu Schaller authoredMatthieu Schaller authored
engine.c 215.70 KiB
/*******************************************************************************
* This file is part of SWIFT.
* Copyright (c) 2012 Pedro Gonnet (pedro.gonnet@durham.ac.uk)
* Matthieu Schaller (matthieu.schaller@durham.ac.uk)
* 2015 Peter W. Draper (p.w.draper@durham.ac.uk)
* Angus Lepper (angus.lepper@ed.ac.uk)
* 2016 John A. Regan (john.a.regan@durham.ac.uk)
* Tom Theuns (tom.theuns@durham.ac.uk)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
/* Config parameters. */
#include "../config.h"
/* Some standard headers. */
#include <float.h>
#include <limits.h>
#include <sched.h>
#include <stdbool.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <unistd.h>
/* MPI headers. */
#ifdef WITH_MPI
#include <mpi.h>
#endif
#ifdef HAVE_LIBNUMA
#include <numa.h>
#endif
/* Load the profiler header, if needed. */
#ifdef WITH_PROFILER
#include <gperftools/profiler.h>
#endif
/* This object's header. */
#include "engine.h"
/* Local headers. */
#include "active.h"
#include "atomic.h"
#include "cell.h"
#include "chemistry.h"
#include "clocks.h"
#include "cooling.h"
#include "cosmology.h"
#include "cycle.h"
#include "debug.h"
#include "error.h"
#include "gravity.h"
#include "gravity_cache.h"
#include "hydro.h"
#include "map.h"
#include "memswap.h"#include "minmax.h"
#include "parallel_io.h"
#include "part.h"
#include "partition.h"
#include "profiler.h"
#include "proxy.h"
#include "restart.h"
#include "runner.h"
#include "serial_io.h"
#include "single_io.h"
#include "sort_part.h"
#include "sourceterms.h"
#include "statistics.h"
#include "timers.h"
#include "tools.h"
#include "units.h"
#include "version.h"
/* Particle cache size. */
#define CACHE_SIZE 512
const char *engine_policy_names[] = {"none",
"rand",
"steal",
"keep",
"block",
"cpu tight",
"mpi",
"numa affinity",
"hydro",
"self gravity",
"external gravity",
"cosmological integration",
"drift everything",
"reconstruct multi-poles",
"cooling",
"sourceterms",
"stars"};
/** The rank of the engine as a global variable (for messages). */
int engine_rank;
/**
* @brief Data collected from the cells at the end of a time-step
*/
struct end_of_step_data {
int updates, g_updates, s_updates;
integertime_t ti_hydro_end_min, ti_hydro_end_max, ti_hydro_beg_max;
integertime_t ti_gravity_end_min, ti_gravity_end_max, ti_gravity_beg_max;
struct engine *e;
};
/**
* @brief Link a density/force task to a cell.
*
* @param e The #engine.
* @param l A pointer to the #link, will be modified atomically.
* @param t The #task.
*
* @return The new #link pointer.
*/
void engine_addlink(struct engine *e, struct link **l, struct task *t) {
/* Get the next free link. */
const size_t ind = atomic_inc(&e->nr_links);
if (ind >= e->size_links) {
error("Link table overflow.");
}
struct link *res = &e->links[ind];
/* Set it atomically. */
res->t = t;
res->next = atomic_swap(l, res);
}
/**
* @brief Recursively add non-implicit ghost tasks to a cell hierarchy.
*/
void engine_add_ghosts(struct engine *e, struct cell *c, struct task *ghost_in,
struct task *ghost_out) {
/* If we have reached the leaf OR have to few particles to play with*/
if (!c->split || c->count < engine_max_parts_per_ghost) {
/* Add the ghost task and its dependencies */
struct scheduler *s = &e->sched;
c->ghost =
scheduler_addtask(s, task_type_ghost, task_subtype_none, 0, 0, c, NULL);
scheduler_addunlock(s, ghost_in, c->ghost);
scheduler_addunlock(s, c->ghost, ghost_out);
} else {
/* Keep recursing */
for (int k = 0; k < 8; k++)
if (c->progeny[k] != NULL)
engine_add_ghosts(e, c->progeny[k], ghost_in, ghost_out);
}
}
/**
* @brief Generate the hydro hierarchical tasks for a hierarchy of cells -
* i.e. all the O(Npart) tasks -- timestep version
*
* Tasks are only created here. The dependencies will be added later on.
*
* Note that there is no need to recurse below the super-cell. Note also
* that we only add tasks if the relevant particles are present in the cell.
*
* @param e The #engine.
* @param c The #cell.
*/
void engine_make_hierarchical_tasks_common(struct engine *e, struct cell *c) {
struct scheduler *s = &e->sched;
const int is_with_cooling = (e->policy & engine_policy_cooling);
/* Are we in a super-cell ? */
if (c->super == c) {
/* Local tasks only... */
if (c->nodeID == e->nodeID) {
/* Add the two half kicks */
c->kick1 = scheduler_addtask(s, task_type_kick1, task_subtype_none, 0, 0,
c, NULL);
c->kick2 = scheduler_addtask(s, task_type_kick2, task_subtype_none, 0, 0,
c, NULL);
/* Add the time-step calculation task and its dependency */
c->timestep = scheduler_addtask(s, task_type_timestep, task_subtype_none,
0, 0, c, NULL);
/* Add the task finishing the force calculation */
c->end_force = scheduler_addtask(s, task_type_end_force,
task_subtype_none, 0, 0, c, NULL);
if (!is_with_cooling) scheduler_addunlock(s, c->end_force, c->kick2);
scheduler_addunlock(s, c->kick2, c->timestep);
scheduler_addunlock(s, c->timestep, c->kick1); }
} else { /* We are above the super-cell so need to go deeper */
/* Recurse. */
if (c->split)
for (int k = 0; k < 8; k++)
if (c->progeny[k] != NULL)
engine_make_hierarchical_tasks_common(e, c->progeny[k]);
}
}
/**
* @brief Generate the hydro hierarchical tasks for a hierarchy of cells -
* i.e. all the O(Npart) tasks -- hydro version
*
* Tasks are only created here. The dependencies will be added later on.
*
* Note that there is no need to recurse below the super-cell. Note also
* that we only add tasks if the relevant particles are present in the cell.
*
* @param e The #engine.
* @param c The #cell.
*/
void engine_make_hierarchical_tasks_hydro(struct engine *e, struct cell *c) {
struct scheduler *s = &e->sched;
const int is_with_cooling = (e->policy & engine_policy_cooling);
const int is_with_sourceterms = (e->policy & engine_policy_sourceterms);
/* Are we in a super-cell ? */
if (c->super_hydro == c) {
/* Add the sort task. */
c->sorts =
scheduler_addtask(s, task_type_sort, task_subtype_none, 0, 0, c, NULL);
/* Local tasks only... */
if (c->nodeID == e->nodeID) {
/* Add the drift task. */
c->drift_part = scheduler_addtask(s, task_type_drift_part,
task_subtype_none, 0, 0, c, NULL);
/* Generate the ghost tasks. */
c->ghost_in =
scheduler_addtask(s, task_type_ghost_in, task_subtype_none, 0,
/* implicit = */ 1, c, NULL);
c->ghost_out =
scheduler_addtask(s, task_type_ghost_out, task_subtype_none, 0,
/* implicit = */ 1, c, NULL);
engine_add_ghosts(e, c, c->ghost_in, c->ghost_out);
#ifdef EXTRA_HYDRO_LOOP
/* Generate the extra ghost task. */
c->extra_ghost = scheduler_addtask(s, task_type_extra_ghost,
task_subtype_none, 0, 0, c, NULL);
#endif
/* Cooling task */
if (is_with_cooling) {
c->cooling = scheduler_addtask(s, task_type_cooling, task_subtype_none,
0, 0, c, NULL);
scheduler_addunlock(s, c->super->end_force, c->cooling);
scheduler_addunlock(s, c->cooling, c->super->kick2);
}
/* add source terms */
if (is_with_sourceterms) { c->sourceterms = scheduler_addtask(s, task_type_sourceterms,
task_subtype_none, 0, 0, c, NULL);
}
}
} else { /* We are above the super-cell so need to go deeper */
/* Recurse. */
if (c->split)
for (int k = 0; k < 8; k++)
if (c->progeny[k] != NULL)
engine_make_hierarchical_tasks_hydro(e, c->progeny[k]);
}
}
/**
* @brief Generate the hydro hierarchical tasks for a hierarchy of cells -
* i.e. all the O(Npart) tasks -- gravity version
*
* Tasks are only created here. The dependencies will be added later on.
*
* Note that there is no need to recurse below the super-cell. Note also
* that we only add tasks if the relevant particles are present in the cell.
*
* @param e The #engine.
* @param c The #cell.
*/
void engine_make_hierarchical_tasks_gravity(struct engine *e, struct cell *c) {
struct scheduler *s = &e->sched;
const int periodic = e->s->periodic;
const int is_self_gravity = (e->policy & engine_policy_self_gravity);
/* Are we in a super-cell ? */
if (c->super_gravity == c) {
/* Local tasks only... */
if (c->nodeID == e->nodeID) {
c->drift_gpart = scheduler_addtask(s, task_type_drift_gpart,
task_subtype_none, 0, 0, c, NULL);
if (is_self_gravity) {
/* Initialisation of the multipoles */
c->init_grav = scheduler_addtask(s, task_type_init_grav,
task_subtype_none, 0, 0, c, NULL);
/* Gravity non-neighbouring pm calculations */
c->grav_long_range = scheduler_addtask(
s, task_type_grav_long_range, task_subtype_none, 0, 0, c, NULL);
/* Gravity recursive down-pass */
c->grav_down = scheduler_addtask(s, task_type_grav_down,
task_subtype_none, 0, 0, c, NULL);
/* Gravity mesh force propagation */
if (periodic)
c->grav_mesh = scheduler_addtask(s, task_type_grav_mesh,
task_subtype_none, 0, 0, c, NULL);
if (periodic) scheduler_addunlock(s, c->drift_gpart, c->grav_mesh);
if (periodic) scheduler_addunlock(s, c->grav_mesh, c->super->end_force);
scheduler_addunlock(s, c->init_grav, c->grav_long_range);
scheduler_addunlock(s, c->grav_long_range, c->grav_down);
scheduler_addunlock(s, c->grav_down, c->super->end_force);
}
}
} else { /* We are above the super-cell so need to go deeper */
/* Recurse. */
if (c->split)
for (int k = 0; k < 8; k++)
if (c->progeny[k] != NULL)
engine_make_hierarchical_tasks_gravity(e, c->progeny[k]);
}
}
void engine_make_hierarchical_tasks_mapper(void *map_data, int num_elements,
void *extra_data) {
struct engine *e = (struct engine *)extra_data;
const int is_with_hydro = (e->policy & engine_policy_hydro);
const int is_with_self_gravity = (e->policy & engine_policy_self_gravity);
const int is_with_external_gravity =
(e->policy & engine_policy_external_gravity);
for (int ind = 0; ind < num_elements; ind++) {
struct cell *c = &((struct cell *)map_data)[ind];
/* Make the common tasks (time integration) */
engine_make_hierarchical_tasks_common(e, c);
/* Add the hydro stuff */
if (is_with_hydro) engine_make_hierarchical_tasks_hydro(e, c);
/* And the gravity stuff */
if (is_with_self_gravity || is_with_external_gravity)
engine_make_hierarchical_tasks_gravity(e, c);
}
}
#ifdef WITH_MPI
/**
* Do the exchange of one type of particles with all the other nodes.
*
* @param counts 2D array with the counts of particles to exchange with
* each other node.
* @param parts the particle data to exchange
* @param new_nr_parts the number of particles this node will have after all
* exchanges have completed.
* @param sizeofparts sizeof the particle struct.
* @param alignsize the memory alignment required for this particle type.
* @param mpi_type the MPI_Datatype for these particles.
* @param nr_nodes the number of nodes to exchange with.
* @param nodeID the id of this node.
*
* @result new particle data constructed from all the exchanges with the
* given alignment.
*/
static void *engine_do_redistribute(int *counts, char *parts,
size_t new_nr_parts, size_t sizeofparts,
size_t alignsize, MPI_Datatype mpi_type,
int nr_nodes, int nodeID) {
/* Allocate a new particle array with some extra margin */
char *parts_new = NULL;
if (posix_memalign(
(void **)&parts_new, alignsize,
sizeofparts * new_nr_parts * engine_redistribute_alloc_margin) != 0)
error("Failed to allocate new particle data.");
/* Prepare MPI requests for the asynchronous communications */
MPI_Request *reqs;
if ((reqs = (MPI_Request *)malloc(sizeof(MPI_Request) * 2 * nr_nodes)) ==
NULL)
error("Failed to allocate MPI request list.");
/* Only send and receive only "chunk" particles per request. So we need to
* loop as many times as necessary here. Make 2Gb/sizeofparts so we only
* send 2Gb packets. */
const int chunk = INT_MAX / sizeofparts;
int sent = 0; int recvd = 0;
int activenodes = 1;
while (activenodes) {
for (int k = 0; k < 2 * nr_nodes; k++) reqs[k] = MPI_REQUEST_NULL;
/* Emit the sends and recvs for the data. */
size_t offset_send = sent;
size_t offset_recv = recvd;
activenodes = 0;
for (int k = 0; k < nr_nodes; k++) {
/* Indices in the count arrays of the node of interest */
const int ind_send = nodeID * nr_nodes + k;
const int ind_recv = k * nr_nodes + nodeID;
/* Are we sending any data this loop? */
int sending = counts[ind_send] - sent;
if (sending > 0) {
activenodes++;
if (sending > chunk) sending = chunk;
/* If the send and receive is local then just copy. */
if (k == nodeID) {
int receiving = counts[ind_recv] - recvd;
if (receiving > chunk) receiving = chunk;
memcpy(&parts_new[offset_recv * sizeofparts],
&parts[offset_send * sizeofparts], sizeofparts * receiving);
} else {
/* Otherwise send it. */
int res =
MPI_Isend(&parts[offset_send * sizeofparts], sending, mpi_type, k,
ind_send, MPI_COMM_WORLD, &reqs[2 * k + 0]);
if (res != MPI_SUCCESS)
mpi_error(res, "Failed to isend parts to node %i.", k);
}
}
/* If we're sending to this node, then move past it to next. */
if (counts[ind_send] > 0) offset_send += counts[ind_send];
/* Are we receiving any data from this node? Note already done if coming
* from this node. */
if (k != nodeID) {
int receiving = counts[ind_recv] - recvd;
if (receiving > 0) {
activenodes++;
if (receiving > chunk) receiving = chunk;
int res = MPI_Irecv(&parts_new[offset_recv * sizeofparts], receiving,
mpi_type, k, ind_recv, MPI_COMM_WORLD,
&reqs[2 * k + 1]);
if (res != MPI_SUCCESS)
mpi_error(res, "Failed to emit irecv of parts from node %i.", k);
}
}
/* If we're receiving from this node, then move past it to next. */
if (counts[ind_recv] > 0) offset_recv += counts[ind_recv];
}
/* Wait for all the sends and recvs to tumble in. */
MPI_Status stats[2 * nr_nodes];
int res;
if ((res = MPI_Waitall(2 * nr_nodes, reqs, stats)) != MPI_SUCCESS) {
for (int k = 0; k < 2 * nr_nodes; k++) {
char buff[MPI_MAX_ERROR_STRING];
MPI_Error_string(stats[k].MPI_ERROR, buff, &res);
message("request from source %i, tag %i has error '%s'.", stats[k].MPI_SOURCE, stats[k].MPI_TAG, buff);
}
error("Failed during waitall for part data.");
}
/* Move to next chunks. */
sent += chunk;
recvd += chunk;
}
/* Free temps. */
free(reqs);
/* And return new memory. */
return parts_new;
}
#endif
#ifdef WITH_MPI /* redist_mapper */
/* Support for engine_redistribute threadpool dest mappers. */
struct redist_mapper_data {
int *counts;
int *dest;
int nodeID;
int nr_nodes;
struct cell *cells;
struct space *s;
void *base;
};
/* Generic function for accumulating counts for TYPE parts. Note
* we use a local counts array to avoid the atomic_add in the parts
* loop. */
#define ENGINE_REDISTRIBUTE_DEST_MAPPER(TYPE) \
engine_redistribute_dest_mapper_##TYPE(void *map_data, int num_elements, \
void *extra_data) { \
struct TYPE *parts = (struct TYPE *)map_data; \
struct redist_mapper_data *mydata = \
(struct redist_mapper_data *)extra_data; \
struct space *s = mydata->s; \
int *dest = \
mydata->dest + (ptrdiff_t)(parts - (struct TYPE *)mydata->base); \
int *lcounts = NULL; \
if ((lcounts = (int *)calloc( \
sizeof(int), mydata->nr_nodes * mydata->nr_nodes)) == NULL) \
error("Failed to allocate counts thread-specific buffer"); \
for (int k = 0; k < num_elements; k++) { \
for (int j = 0; j < 3; j++) { \
if (parts[k].x[j] < 0.0) \
parts[k].x[j] += s->dim[j]; \
else if (parts[k].x[j] >= s->dim[j]) \
parts[k].x[j] -= s->dim[j]; \
} \
const int cid = cell_getid(s->cdim, parts[k].x[0] * s->iwidth[0], \
parts[k].x[1] * s->iwidth[1], \
parts[k].x[2] * s->iwidth[2]); \
dest[k] = s->cells_top[cid].nodeID; \
size_t ind = mydata->nodeID * mydata->nr_nodes + dest[k]; \
lcounts[ind] += 1; \
} \
for (int k = 0; k < (mydata->nr_nodes * mydata->nr_nodes); k++) \
atomic_add(&mydata->counts[k], lcounts[k]); \
free(lcounts); \
}
/**
* @brief Accumulate the counts of particles per cell.
* Threadpool helper for accumulating the counts of particles per cell.
* * part version.
*/
static void ENGINE_REDISTRIBUTE_DEST_MAPPER(part);
/**
* @brief Accumulate the counts of star particles per cell.
* Threadpool helper for accumulating the counts of particles per cell.
*
* spart version.
*/
static void ENGINE_REDISTRIBUTE_DEST_MAPPER(spart);
/**
* @brief Accumulate the counts of gravity particles per cell.
* Threadpool helper for accumulating the counts of particles per cell.
*
* gpart version.
*/
static void ENGINE_REDISTRIBUTE_DEST_MAPPER(gpart);
#endif /* redist_mapper_data */
#ifdef WITH_MPI /* savelink_mapper_data */
/* Support for saving the linkage between gparts and parts/sparts. */
struct savelink_mapper_data {
int nr_nodes;
int *counts;
void *parts;
int nodeID;
};
/**
* @brief Save the offset of each gravity partner of a part or spart.
*
* The offset is from the start of the sorted particles to be sent to a node.
* This is possible as parts without gravity partners have a positive id.
* These offsets are used to restore the pointers on the receiving node.
*
* CHECKS should be eliminated as dead code when optimizing.
*/
#define ENGINE_REDISTRIBUTE_SAVELINK_MAPPER(TYPE, CHECKS) \
engine_redistribute_savelink_mapper_##TYPE(void *map_data, int num_elements, \
void *extra_data) { \
int *nodes = (int *)map_data; \
struct savelink_mapper_data *mydata = \
(struct savelink_mapper_data *)extra_data; \
int nodeID = mydata->nodeID; \
int nr_nodes = mydata->nr_nodes; \
int *counts = mydata->counts; \
struct TYPE *parts = (struct TYPE *)mydata->parts; \
\
for (int j = 0; j < num_elements; j++) { \
int node = nodes[j]; \
int count = 0; \
size_t offset = 0; \
for (int i = 0; i < node; i++) offset += counts[nodeID * nr_nodes + i]; \
\
for (int k = 0; k < counts[nodeID * nr_nodes + node]; k++) { \
if (parts[k + offset].gpart != NULL) { \
if (CHECKS) \
if (parts[k].gpart->id_or_neg_offset > 0) \
error("Trying to link a partnerless " #TYPE "!"); \
parts[k + offset].gpart->id_or_neg_offset = -count; \
count++; \
} \
} \
} \
}
/**
* @brief Save position of part-gpart links.
* Threadpool helper for accumulating the counts of particles per cell.
*/
#ifdef SWIFT_DEBUG_CHECKS
static void ENGINE_REDISTRIBUTE_SAVELINK_MAPPER(part, 1);
#else
static void ENGINE_REDISTRIBUTE_SAVELINK_MAPPER(part, 0);
#endif
/**
* @brief Save position of spart-gpart links.
* Threadpool helper for accumulating the counts of particles per cell.
*/
#ifdef SWIFT_DEBUG_CHECKS
static void ENGINE_REDISTRIBUTE_SAVELINK_MAPPER(spart, 1);
#else
static void ENGINE_REDISTRIBUTE_SAVELINK_MAPPER(spart, 0);
#endif
#endif /* savelink_mapper_data */
#ifdef WITH_MPI /* relink_mapper_data */
/* Support for relinking parts, gparts and sparts after moving between nodes. */
struct relink_mapper_data {
int nodeID;
int nr_nodes;
int *counts;
int *s_counts;
int *g_counts;
struct space *s;
};
/**
* @brief Restore the part/gpart and spart/gpart links for a list of nodes.
*
* @param map_data address of nodes to process.
* @param num_elements the number nodes to process.
* @param extra_data additional data defining the context (a
* relink_mapper_data).
*/
static void engine_redistribute_relink_mapper(void *map_data, int num_elements,
void *extra_data) {
int *nodes = (int *)map_data;
struct relink_mapper_data *mydata = (struct relink_mapper_data *)extra_data;
int nodeID = mydata->nodeID;
int nr_nodes = mydata->nr_nodes;
int *counts = mydata->counts;
int *g_counts = mydata->g_counts;
int *s_counts = mydata->s_counts;
struct space *s = mydata->s;
for (int i = 0; i < num_elements; i++) {
int node = nodes[i];
/* Get offsets to correct parts of the counts arrays for this node. */
size_t offset_parts = 0;
size_t offset_gparts = 0;
size_t offset_sparts = 0;
for (int n = 0; n < node; n++) {
int ind_recv = n * nr_nodes + nodeID;
offset_parts += counts[ind_recv];
offset_gparts += g_counts[ind_recv];
offset_sparts += s_counts[ind_recv];
}
/* Number of gparts sent from this node. */
int ind_recv = node * nr_nodes + nodeID;
const size_t count_gparts = g_counts[ind_recv];
/* Loop over the gparts received from this node */
for (size_t k = offset_gparts; k < offset_gparts + count_gparts; k++) {
/* Does this gpart have a gas partner ? */
if (s->gparts[k].type == swift_type_gas) {
const ptrdiff_t partner_index =
offset_parts - s->gparts[k].id_or_neg_offset;
/* Re-link */
s->gparts[k].id_or_neg_offset = -partner_index;
s->parts[partner_index].gpart = &s->gparts[k];
}
/* Does this gpart have a star partner ? */
else if (s->gparts[k].type == swift_type_star) {
const ptrdiff_t partner_index =
offset_sparts - s->gparts[k].id_or_neg_offset;
/* Re-link */
s->gparts[k].id_or_neg_offset = -partner_index;
s->sparts[partner_index].gpart = &s->gparts[k];
}
}
}
}
#endif /* relink_mapper_data */
/**
* @brief Redistribute the particles amongst the nodes according
* to their cell's node IDs.
*
* The strategy here is as follows:
* 1) Each node counts the number of particles it has to send to each other
* node.
* 2) The number of particles of each type is then exchanged.
* 3) The particles to send are placed in a temporary buffer in which the
* part-gpart links are preserved.
* 4) Each node allocates enough space for the new particles.
* 5) (Asynchronous) communications are issued to transfer the data.
*
*
* @param e The #engine.
*/
void engine_redistribute(struct engine *e) {
#ifdef WITH_MPI
const int nr_nodes = e->nr_nodes;
const int nodeID = e->nodeID;
struct space *s = e->s;
struct cell *cells = s->cells_top;
const int nr_cells = s->nr_cells;
struct part *parts = s->parts;
struct gpart *gparts = s->gparts;
struct spart *sparts = s->sparts;
ticks tic = getticks();
/* Allocate temporary arrays to store the counts of particles to be sent
* and the destination of each particle */
int *counts;
if ((counts = (int *)calloc(sizeof(int), nr_nodes * nr_nodes)) == NULL)
error("Failed to allocate counts temporary buffer.");
int *dest;
if ((dest = (int *)malloc(sizeof(int) * s->nr_parts)) == NULL)
error("Failed to allocate dest temporary buffer.");
/* Simple index of node IDs, used for mappers over nodes. */
int *nodes = NULL;
if ((nodes = (int *)malloc(sizeof(int) * nr_nodes)) == NULL)
error("Failed to allocate nodes temporary buffer.");
for (int k = 0; k < nr_nodes; k++) nodes[k] = k;
/* Get destination of each particle */
struct redist_mapper_data redist_data;
redist_data.s = s;
redist_data.nodeID = nodeID;
redist_data.nr_nodes = nr_nodes;
redist_data.counts = counts;
redist_data.dest = dest;
redist_data.base = (void *)parts;
threadpool_map(&e->threadpool, engine_redistribute_dest_mapper_part, parts,
s->nr_parts, sizeof(struct part), 0, &redist_data);
/* Sort the particles according to their cell index. */
if (s->nr_parts > 0)
space_parts_sort(s->parts, s->xparts, dest, &counts[nodeID * nr_nodes],
nr_nodes, 0);
#ifdef SWIFT_DEBUG_CHECKS
/* Verify that the part have been sorted correctly. */
for (size_t k = 0; k < s->nr_parts; k++) {
const struct part *p = &s->parts[k];
/* New cell index */
const int new_cid =
cell_getid(s->cdim, p->x[0] * s->iwidth[0], p->x[1] * s->iwidth[1],
p->x[2] * s->iwidth[2]);
/* New cell of this part */
const struct cell *c = &s->cells_top[new_cid];
const int new_node = c->nodeID;
if (dest[k] != new_node)
error("part's new node index not matching sorted index.");
if (p->x[0] < c->loc[0] || p->x[0] > c->loc[0] + c->width[0] ||
p->x[1] < c->loc[1] || p->x[1] > c->loc[1] + c->width[1] ||
p->x[2] < c->loc[2] || p->x[2] > c->loc[2] + c->width[2])
error("part not sorted into the right top-level cell!");
}
#endif
/* We will need to re-link the gpart partners of parts, so save their
* relative positions in the sent lists. */
if (s->nr_parts > 0 && s->nr_gparts > 0) {
struct savelink_mapper_data savelink_data;
savelink_data.nr_nodes = nr_nodes;
savelink_data.counts = counts;
savelink_data.parts = (void *)parts;
savelink_data.nodeID = nodeID;
threadpool_map(&e->threadpool, engine_redistribute_savelink_mapper_part,
nodes, nr_nodes, sizeof(int), 0, &savelink_data);
}
free(dest);
/* Get destination of each s-particle */
int *s_counts;
if ((s_counts = (int *)calloc(sizeof(int), nr_nodes * nr_nodes)) == NULL)
error("Failed to allocate s_counts temporary buffer.");
int *s_dest;
if ((s_dest = (int *)malloc(sizeof(int) * s->nr_sparts)) == NULL)
error("Failed to allocate s_dest temporary buffer.");
redist_data.counts = s_counts;
redist_data.dest = s_dest;
redist_data.base = (void *)sparts;
threadpool_map(&e->threadpool, engine_redistribute_dest_mapper_spart, sparts,
s->nr_sparts, sizeof(struct spart), 0, &redist_data);
/* Sort the particles according to their cell index. */
if (s->nr_sparts > 0)
space_sparts_sort(s->sparts, s_dest, &s_counts[nodeID * nr_nodes], nr_nodes,
0);
#ifdef SWIFT_DEBUG_CHECKS
/* Verify that the spart have been sorted correctly. */
for (size_t k = 0; k < s->nr_sparts; k++) {
const struct spart *sp = &s->sparts[k];
/* New cell index */
const int new_cid =
cell_getid(s->cdim, sp->x[0] * s->iwidth[0], sp->x[1] * s->iwidth[1],
sp->x[2] * s->iwidth[2]);
/* New cell of this spart */
const struct cell *c = &s->cells_top[new_cid];
const int new_node = c->nodeID;
if (s_dest[k] != new_node)
error("spart's new node index not matching sorted index.");
if (sp->x[0] < c->loc[0] || sp->x[0] > c->loc[0] + c->width[0] ||
sp->x[1] < c->loc[1] || sp->x[1] > c->loc[1] + c->width[1] ||
sp->x[2] < c->loc[2] || sp->x[2] > c->loc[2] + c->width[2])
error("spart not sorted into the right top-level cell!");
}
#endif
/* We need to re-link the gpart partners of sparts. */
if (s->nr_sparts > 0) {
struct savelink_mapper_data savelink_data;
savelink_data.nr_nodes = nr_nodes;
savelink_data.counts = s_counts;
savelink_data.parts = (void *)sparts;
savelink_data.nodeID = nodeID;
threadpool_map(&e->threadpool, engine_redistribute_savelink_mapper_spart,
nodes, nr_nodes, sizeof(int), 0, &savelink_data);
}
free(s_dest);
/* Get destination of each g-particle */
int *g_counts;
if ((g_counts = (int *)calloc(sizeof(int), nr_nodes * nr_nodes)) == NULL)
error("Failed to allocate g_gcount temporary buffer.");
int *g_dest;
if ((g_dest = (int *)malloc(sizeof(int) * s->nr_gparts)) == NULL)
error("Failed to allocate g_dest temporary buffer.");
redist_data.counts = g_counts;
redist_data.dest = g_dest;
redist_data.base = (void *)gparts;
threadpool_map(&e->threadpool, engine_redistribute_dest_mapper_gpart, gparts,
s->nr_gparts, sizeof(struct gpart), 0, &redist_data);
/* Sort the gparticles according to their cell index. */
if (s->nr_gparts > 0)
space_gparts_sort(s->gparts, s->parts, s->sparts, g_dest,
&g_counts[nodeID * nr_nodes], nr_nodes);
#ifdef SWIFT_DEBUG_CHECKS
/* Verify that the gpart have been sorted correctly. */
for (size_t k = 0; k < s->nr_gparts; k++) {
const struct gpart *gp = &s->gparts[k];
/* New cell index */
const int new_cid =
cell_getid(s->cdim, gp->x[0] * s->iwidth[0], gp->x[1] * s->iwidth[1],
gp->x[2] * s->iwidth[2]);
/* New cell of this gpart */
const struct cell *c = &s->cells_top[new_cid];
const int new_node = c->nodeID;
if (g_dest[k] != new_node)
error("gpart's new node index not matching sorted index (%d != %d).",
g_dest[k], new_node);
if (gp->x[0] < c->loc[0] || gp->x[0] > c->loc[0] + c->width[0] ||
gp->x[1] < c->loc[1] || gp->x[1] > c->loc[1] + c->width[1] ||
gp->x[2] < c->loc[2] || gp->x[2] > c->loc[2] + c->width[2])
error("gpart not sorted into the right top-level cell!");
}
#endif
free(g_dest);
/* Get all the counts from all the nodes. */
if (MPI_Allreduce(MPI_IN_PLACE, counts, nr_nodes * nr_nodes, MPI_INT, MPI_SUM,
MPI_COMM_WORLD) != MPI_SUCCESS)
error("Failed to allreduce particle transfer counts.");
/* Get all the s_counts from all the nodes. */
if (MPI_Allreduce(MPI_IN_PLACE, g_counts, nr_nodes * nr_nodes, MPI_INT,
MPI_SUM, MPI_COMM_WORLD) != MPI_SUCCESS)
error("Failed to allreduce gparticle transfer counts.");
/* Get all the g_counts from all the nodes. */
if (MPI_Allreduce(MPI_IN_PLACE, s_counts, nr_nodes * nr_nodes, MPI_INT,
MPI_SUM, MPI_COMM_WORLD) != MPI_SUCCESS)
error("Failed to allreduce sparticle transfer counts.");
/* Report how many particles will be moved. */
if (e->verbose) {
if (e->nodeID == 0) {
size_t total = 0, g_total = 0, s_total = 0;
size_t unmoved = 0, g_unmoved = 0, s_unmoved = 0;
for (int p = 0, r = 0; p < nr_nodes; p++) {
for (int n = 0; n < nr_nodes; n++) {
total += counts[r];
g_total += g_counts[r];
s_total += s_counts[r];
if (p == n) {
unmoved += counts[r];
g_unmoved += g_counts[r];
s_unmoved += s_counts[r];
}
r++;
}
}
if (total > 0)
message("%ld of %ld (%.2f%%) of particles moved", total - unmoved,
total, 100.0 * (double)(total - unmoved) / (double)total);
if (g_total > 0)
message("%ld of %ld (%.2f%%) of g-particles moved", g_total - g_unmoved, g_total,
100.0 * (double)(g_total - g_unmoved) / (double)g_total);
if (s_total > 0)
message("%ld of %ld (%.2f%%) of s-particles moved", s_total - s_unmoved,
s_total,
100.0 * (double)(s_total - s_unmoved) / (double)s_total);
}
}
/* Now each node knows how many parts, sparts and gparts will be transferred
* to every other node.
* Get the new numbers of particles for this node. */
size_t nr_parts = 0, nr_gparts = 0, nr_sparts = 0;
for (int k = 0; k < nr_nodes; k++) nr_parts += counts[k * nr_nodes + nodeID];
for (int k = 0; k < nr_nodes; k++)
nr_gparts += g_counts[k * nr_nodes + nodeID];
for (int k = 0; k < nr_nodes; k++)
nr_sparts += s_counts[k * nr_nodes + nodeID];
/* Now exchange the particles, type by type to keep the memory required
* under control. */
/* SPH particles. */
void *new_parts = engine_do_redistribute(counts, (char *)s->parts, nr_parts,
sizeof(struct part), part_align,
part_mpi_type, nr_nodes, nodeID);
free(s->parts);
s->parts = (struct part *)new_parts;
s->nr_parts = nr_parts;
s->size_parts = engine_redistribute_alloc_margin * nr_parts;
/* Extra SPH particle properties. */
new_parts = engine_do_redistribute(counts, (char *)s->xparts, nr_parts,
sizeof(struct xpart), xpart_align,
xpart_mpi_type, nr_nodes, nodeID);
free(s->xparts);
s->xparts = (struct xpart *)new_parts;
/* Gravity particles. */
new_parts = engine_do_redistribute(g_counts, (char *)s->gparts, nr_gparts,
sizeof(struct gpart), gpart_align,
gpart_mpi_type, nr_nodes, nodeID);
free(s->gparts);
s->gparts = (struct gpart *)new_parts;
s->nr_gparts = nr_gparts;
s->size_gparts = engine_redistribute_alloc_margin * nr_gparts;
/* Star particles. */
new_parts = engine_do_redistribute(s_counts, (char *)s->sparts, nr_sparts,
sizeof(struct spart), spart_align,
spart_mpi_type, nr_nodes, nodeID);
free(s->sparts);
s->sparts = (struct spart *)new_parts;
s->nr_sparts = nr_sparts;
s->size_sparts = engine_redistribute_alloc_margin * nr_sparts;
/* All particles have now arrived. Time for some final operations on the
stuff we just received */
/* Restore the part<->gpart and spart<->gpart links.
* Generate indices and counts for threadpool tasks. Note we process a node
* at a time. */
struct relink_mapper_data relink_data;
relink_data.s = s;
relink_data.counts = counts;
relink_data.g_counts = g_counts;
relink_data.s_counts = s_counts;
relink_data.nodeID = nodeID;
relink_data.nr_nodes = nr_nodes;
threadpool_map(&e->threadpool, engine_redistribute_relink_mapper, nodes,
nr_nodes, sizeof(int), 1, &relink_data);
free(nodes);
/* Clean up the counts now we are done. */
free(counts);
free(g_counts);
free(s_counts);
#ifdef SWIFT_DEBUG_CHECKS
/* Verify that all parts are in the right place. */
for (size_t k = 0; k < nr_parts; k++) {
const int cid = cell_getid(s->cdim, s->parts[k].x[0] * s->iwidth[0],
s->parts[k].x[1] * s->iwidth[1],
s->parts[k].x[2] * s->iwidth[2]);
if (cells[cid].nodeID != nodeID)
error("Received particle (%zu) that does not belong here (nodeID=%i).", k,
cells[cid].nodeID);
}
for (size_t k = 0; k < nr_gparts; k++) {
const int cid = cell_getid(s->cdim, s->gparts[k].x[0] * s->iwidth[0],
s->gparts[k].x[1] * s->iwidth[1],
s->gparts[k].x[2] * s->iwidth[2]);
if (cells[cid].nodeID != nodeID)
error("Received g-particle (%zu) that does not belong here (nodeID=%i).",
k, cells[cid].nodeID);
}
for (size_t k = 0; k < nr_sparts; k++) {
const int cid = cell_getid(s->cdim, s->sparts[k].x[0] * s->iwidth[0],
s->sparts[k].x[1] * s->iwidth[1],
s->sparts[k].x[2] * s->iwidth[2]);
if (cells[cid].nodeID != nodeID)
error("Received s-particle (%zu) that does not belong here (nodeID=%i).",
k, cells[cid].nodeID);
}
/* Verify that the links are correct */
part_verify_links(s->parts, s->gparts, s->sparts, nr_parts, nr_gparts,
nr_sparts, e->verbose);
#endif
/* Be verbose about what just happened. */
if (e->verbose) {
int my_cells = 0;
for (int k = 0; k < nr_cells; k++)
if (cells[k].nodeID == nodeID) my_cells += 1;
message("node %i now has %zu parts, %zu sparts and %zu gparts in %i cells.",
nodeID, nr_parts, nr_sparts, nr_gparts, my_cells);
}
/* Flag that a redistribute has taken place */
e->step_props |= engine_step_prop_redistribute;
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Repartition the cells amongst the nodes.
*
* @param e The #engine.
*/
void engine_repartition(struct engine *e) {
#if defined(WITH_MPI) && defined(HAVE_METIS)
ticks tic = getticks();
#ifdef SWIFT_DEBUG_CHECKS
/* Be verbose about this. */
if (e->nodeID == 0 || e->verbose) message("repartitioning space");
fflush(stdout);
/* Check that all cells have been drifted to the current time */
space_check_drift_point(e->s, e->ti_old,
e->policy & engine_policy_self_gravity);
#endif
/* Clear the repartition flag. */
e->forcerepart = 0;
/* Nothing to do if only using a single node. Also avoids METIS
* bug that doesn't handle this case well. */
if (e->nr_nodes == 1) return;
/* Do the repartitioning. */
partition_repartition(e->reparttype, e->nodeID, e->nr_nodes, e->s,
e->sched.tasks, e->sched.nr_tasks);
/* Partitioning requires copies of the particles, so we need to reduce the
* memory in use to the minimum, we can free the sorting indices and the
* tasks as these will be regenerated at the next rebuild. */
/* Sorting indices. */
if (e->s->cells_top != NULL) space_free_cells(e->s);
/* Task arrays. */
scheduler_free_tasks(&e->sched);
/* Now comes the tricky part: Exchange particles between all nodes.
This is done in two steps, first allreducing a matrix of
how many particles go from where to where, then re-allocating
the parts array, and emitting the sends and receives.
Finally, the space, tasks, and proxies need to be rebuilt. */
/* Redistribute the particles between the nodes. */
engine_redistribute(e);
/* Make the proxies. */
engine_makeproxies(e);
/* Tell the engine it should re-build whenever possible */
e->forcerebuild = 1;
/* Flag that a repartition has taken place */
e->step_props |= engine_step_prop_repartition;
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
#else
if (e->reparttype->type != REPART_NONE)
error("SWIFT was not compiled with MPI and METIS support.");
/* Clear the repartition flag. */
e->forcerepart = 0;
#endif
}
/**
* @brief Decide whether trigger a repartition the cells amongst the nodes.
*
* @param e The #engine.
*/
void engine_repartition_trigger(struct engine *e) {
#ifdef WITH_MPI
/* Do nothing if there have not been enough steps since the last
* repartition, don't want to repeat this too often or immediately after
* a repartition step. Also nothing to do when requested. */
if (e->step - e->last_repartition >= 2 &&
e->reparttype->type != REPART_NONE) {
/* Old style if trigger is >1 or this is the second step (want an early
* repartition following the initial repartition). */
if (e->reparttype->trigger > 1 || e->step == 2) {
if (e->reparttype->trigger > 1) {
if ((e->step % (int)e->reparttype->trigger) == 0) e->forcerepart = 1;
} else {
e->forcerepart = 1;
}
} else {
/* Use cputimes from ranks to estimate the imbalance. */
/* First check if we are going to skip this stage anyway, if so do that
* now. If is only worth checking the CPU loads when we have processed a
* significant number of all particles. */
if ((e->updates > 1 &&
e->updates >= e->total_nr_parts * e->reparttype->minfrac) ||
(e->g_updates > 1 &&
e->g_updates >= e->total_nr_gparts * e->reparttype->minfrac)) {
/* Get CPU time used since the last call to this function. */
double elapsed_cputime =
clocks_get_cputime_used() - e->cputime_last_step;
/* Gather the elapsed CPU times from all ranks for the last step. */
double elapsed_cputimes[e->nr_nodes];
MPI_Gather(&elapsed_cputime, 1, MPI_DOUBLE, elapsed_cputimes, 1,
MPI_DOUBLE, 0, MPI_COMM_WORLD);
if (e->nodeID == 0) {
/* Get the range and mean of cputimes. */
double mintime = elapsed_cputimes[0];
double maxtime = elapsed_cputimes[0];
double sum = elapsed_cputimes[0];
for (int k = 1; k < e->nr_nodes; k++) {
if (elapsed_cputimes[k] > maxtime) maxtime = elapsed_cputimes[k];
if (elapsed_cputimes[k] < mintime) mintime = elapsed_cputimes[k];
sum += elapsed_cputimes[k];
}
double mean = sum / (double)e->nr_nodes;
/* Are we out of balance? */
if (((maxtime - mintime) / mean) > e->reparttype->trigger) {
if (e->verbose)
message("trigger fraction %.3f exceeds %.3f will repartition",
(maxtime - mintime) / mintime, e->reparttype->trigger);
e->forcerepart = 1;
}
}
/* All nodes do this together. */
MPI_Bcast(&e->forcerepart, 1, MPI_INT, 0, MPI_COMM_WORLD);
}
}
/* Remember we did this. */
if (e->forcerepart) e->last_repartition = e->step;
}
/* We always reset CPU time for next check, unless it will not be used. */
if (e->reparttype->type != REPART_NONE)
e->cputime_last_step = clocks_get_cputime_used();#endif
}
/**
* @brief Add send tasks for the hydro pairs to a hierarchy of cells.
*
* @param e The #engine.
* @param ci The sending #cell.
* @param cj Dummy cell containing the nodeID of the receiving node.
* @param t_xv The send_xv #task, if it has already been created.
* @param t_rho The send_rho #task, if it has already been created.
* @param t_gradient The send_gradient #task, if already created.
*/
void engine_addtasks_send_hydro(struct engine *e, struct cell *ci,
struct cell *cj, struct task *t_xv,
struct task *t_rho, struct task *t_gradient) {
#ifdef WITH_MPI
struct link *l = NULL;
struct scheduler *s = &e->sched;
const int nodeID = cj->nodeID;
/* Check if any of the density tasks are for the target node. */
for (l = ci->density; l != NULL; l = l->next)
if (l->t->ci->nodeID == nodeID ||
(l->t->cj != NULL && l->t->cj->nodeID == nodeID))
break;
/* If so, attach send tasks. */
if (l != NULL) {
/* Create the tasks and their dependencies? */
if (t_xv == NULL) {
t_xv = scheduler_addtask(s, task_type_send, task_subtype_xv,
6 * ci->tag + 0, 0, ci, cj);
t_rho = scheduler_addtask(s, task_type_send, task_subtype_rho,
6 * ci->tag + 1, 0, ci, cj);
#ifdef EXTRA_HYDRO_LOOP
t_gradient = scheduler_addtask(s, task_type_send, task_subtype_gradient,
6 * ci->tag + 3, 0, ci, cj);
#endif
#ifdef EXTRA_HYDRO_LOOP
scheduler_addunlock(s, t_gradient, ci->super->kick2);
scheduler_addunlock(s, ci->super_hydro->extra_ghost, t_gradient);
/* The send_rho task should unlock the super_hydro-cell's extra_ghost
* task. */
scheduler_addunlock(s, t_rho, ci->super_hydro->extra_ghost);
/* The send_rho task depends on the cell's ghost task. */
scheduler_addunlock(s, ci->super_hydro->ghost_out, t_rho);
/* The send_xv task should unlock the super_hydro-cell's ghost task. */
scheduler_addunlock(s, t_xv, ci->super_hydro->ghost_in);
#else
/* The send_rho task should unlock the super_hydro-cell's kick task. */
scheduler_addunlock(s, t_rho, ci->super->end_force);
/* The send_rho task depends on the cell's ghost task. */
scheduler_addunlock(s, ci->super_hydro->ghost_out, t_rho);
/* The send_xv task should unlock the super_hydro-cell's ghost task. */
scheduler_addunlock(s, t_xv, ci->super_hydro->ghost_in);
#endif
/* Drift before you send */
scheduler_addunlock(s, ci->super_hydro->drift_part, t_xv);
}
/* Add them to the local cell. */
engine_addlink(e, &ci->send_xv, t_xv);
engine_addlink(e, &ci->send_rho, t_rho);
#ifdef EXTRA_HYDRO_LOOP
engine_addlink(e, &ci->send_gradient, t_gradient);
#endif
}
/* Recurse? */
if (ci->split)
for (int k = 0; k < 8; k++)
if (ci->progeny[k] != NULL)
engine_addtasks_send_hydro(e, ci->progeny[k], cj, t_xv, t_rho,
t_gradient);
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Add send tasks for the gravity pairs to a hierarchy of cells.
*
* @param e The #engine.
* @param ci The sending #cell.
* @param cj Dummy cell containing the nodeID of the receiving node.
* @param t_grav The send_grav #task, if it has already been created.
*/
void engine_addtasks_send_gravity(struct engine *e, struct cell *ci,
struct cell *cj, struct task *t_grav) {
#ifdef WITH_MPI
struct link *l = NULL;
struct scheduler *s = &e->sched;
const int nodeID = cj->nodeID;
/* Check if any of the gravity tasks are for the target node. */
for (l = ci->grav; l != NULL; l = l->next)
if (l->t->ci->nodeID == nodeID ||
(l->t->cj != NULL && l->t->cj->nodeID == nodeID))
break;
/* If so, attach send tasks. */
if (l != NULL) {
/* Create the tasks and their dependencies? */
if (t_grav == NULL) {
t_grav = scheduler_addtask(s, task_type_send, task_subtype_gpart,
6 * ci->tag + 4, 0, ci, cj);
/* The sends should unlock the down pass. */
scheduler_addunlock(s, t_grav, ci->super_gravity->grav_down);
/* Drift before you send */
scheduler_addunlock(s, ci->super_gravity->drift_gpart, t_grav);
}
/* Add them to the local cell. */
engine_addlink(e, &ci->send_grav, t_grav);
}
/* Recurse? */
if (ci->split)
for (int k = 0; k < 8; k++) if (ci->progeny[k] != NULL)
engine_addtasks_send_gravity(e, ci->progeny[k], cj, t_grav);
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Add send tasks for the time-step to a hierarchy of cells.
*
* @param e The #engine.
* @param ci The sending #cell.
* @param cj Dummy cell containing the nodeID of the receiving node.
* @param t_ti The send_ti #task, if it has already been created.
*/
void engine_addtasks_send_timestep(struct engine *e, struct cell *ci,
struct cell *cj, struct task *t_ti) {
#ifdef WITH_MPI
struct link *l = NULL;
struct scheduler *s = &e->sched;
const int nodeID = cj->nodeID;
/* Check if any of the gravity tasks are for the target node. */
for (l = ci->grav; l != NULL; l = l->next)
if (l->t->ci->nodeID == nodeID ||
(l->t->cj != NULL && l->t->cj->nodeID == nodeID))
break;
/* Check whether instead any of the hydro tasks are for the target node. */
if (l == NULL)
for (l = ci->density; l != NULL; l = l->next)
if (l->t->ci->nodeID == nodeID ||
(l->t->cj != NULL && l->t->cj->nodeID == nodeID))
break;
/* If found anything, attach send tasks. */
if (l != NULL) {
/* Create the tasks and their dependencies? */
if (t_ti == NULL) {
t_ti = scheduler_addtask(s, task_type_send, task_subtype_tend,
6 * ci->tag + 2, 0, ci, cj);
/* The super-cell's timestep task should unlock the send_ti task. */
scheduler_addunlock(s, ci->super->timestep, t_ti);
}
/* Add them to the local cell. */
engine_addlink(e, &ci->send_ti, t_ti);
}
/* Recurse? */
if (ci->split)
for (int k = 0; k < 8; k++)
if (ci->progeny[k] != NULL)
engine_addtasks_send_timestep(e, ci->progeny[k], cj, t_ti);
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Add recv tasks for hydro pairs to a hierarchy of cells.
*
* @param e The #engine.
* @param c The foreign #cell. * @param t_xv The recv_xv #task, if it has already been created.
* @param t_rho The recv_rho #task, if it has already been created.
* @param t_gradient The recv_gradient #task, if it has already been created.
*/
void engine_addtasks_recv_hydro(struct engine *e, struct cell *c,
struct task *t_xv, struct task *t_rho,
struct task *t_gradient) {
#ifdef WITH_MPI
struct scheduler *s = &e->sched;
/* Have we reached a level where there are any hydro tasks ? */
if (t_xv == NULL && c->density != NULL) {
/* Create the tasks. */
t_xv = scheduler_addtask(s, task_type_recv, task_subtype_xv, 6 * c->tag + 0,
0, c, NULL);
t_rho = scheduler_addtask(s, task_type_recv, task_subtype_rho,
6 * c->tag + 1, 0, c, NULL);
#ifdef EXTRA_HYDRO_LOOP
t_gradient = scheduler_addtask(s, task_type_recv, task_subtype_gradient,
6 * c->tag + 3, 0, c, NULL);
#endif
}
c->recv_xv = t_xv;
c->recv_rho = t_rho;
c->recv_gradient = t_gradient;
/* Add dependencies. */
if (c->sorts != NULL) scheduler_addunlock(s, t_xv, c->sorts);
for (struct link *l = c->density; l != NULL; l = l->next) {
scheduler_addunlock(s, t_xv, l->t);
scheduler_addunlock(s, l->t, t_rho);
}
#ifdef EXTRA_HYDRO_LOOP
for (struct link *l = c->gradient; l != NULL; l = l->next) {
scheduler_addunlock(s, t_rho, l->t);
scheduler_addunlock(s, l->t, t_gradient);
}
for (struct link *l = c->force; l != NULL; l = l->next)
scheduler_addunlock(s, t_gradient, l->t);
#else
for (struct link *l = c->force; l != NULL; l = l->next)
scheduler_addunlock(s, t_rho, l->t);
#endif
/* Recurse? */
if (c->split)
for (int k = 0; k < 8; k++)
if (c->progeny[k] != NULL)
engine_addtasks_recv_hydro(e, c->progeny[k], t_xv, t_rho, t_gradient);
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Add recv tasks for gravity pairs to a hierarchy of cells.
*
* @param e The #engine.
* @param c The foreign #cell.
* @param t_grav The recv_gpart #task, if it has already been created.
*/
void engine_addtasks_recv_gravity(struct engine *e, struct cell *c,
struct task *t_grav) {
#ifdef WITH_MPI struct scheduler *s = &e->sched;
/* Have we reached a level where there are any gravity tasks ? */
if (t_grav == NULL && c->grav != NULL) {
/* Create the tasks. */
t_grav = scheduler_addtask(s, task_type_recv, task_subtype_gpart,
6 * c->tag + 4, 0, c, NULL);
}
c->recv_grav = t_grav;
for (struct link *l = c->grav; l != NULL; l = l->next)
scheduler_addunlock(s, t_grav, l->t);
/* Recurse? */
if (c->split)
for (int k = 0; k < 8; k++)
if (c->progeny[k] != NULL)
engine_addtasks_recv_gravity(e, c->progeny[k], t_grav);
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Add recv tasks for gravity pairs to a hierarchy of cells.
*
* @param e The #engine.
* @param c The foreign #cell.
* @param t_ti The recv_ti #task, if already been created.
*/
void engine_addtasks_recv_timestep(struct engine *e, struct cell *c,
struct task *t_ti) {
#ifdef WITH_MPI
struct scheduler *s = &e->sched;
/* Have we reached a level where there are any self/pair tasks ? */
if (t_ti == NULL && (c->grav != NULL || c->density != NULL)) {
t_ti = scheduler_addtask(s, task_type_recv, task_subtype_tend,
6 * c->tag + 2, 0, c, NULL);
}
c->recv_ti = t_ti;
for (struct link *l = c->grav; l != NULL; l = l->next)
scheduler_addunlock(s, l->t, t_ti);
for (struct link *l = c->force; l != NULL; l = l->next)
scheduler_addunlock(s, l->t, t_ti);
/* Recurse? */
if (c->split)
for (int k = 0; k < 8; k++)
if (c->progeny[k] != NULL)
engine_addtasks_recv_timestep(e, c->progeny[k], t_ti);
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Exchange cell structures with other nodes.
*
* @param e The #engine.
*/void engine_exchange_cells(struct engine *e) {
#ifdef WITH_MPI
struct space *s = e->s;
struct cell *cells = s->cells_top;
const int nr_cells = s->nr_cells;
const int nr_proxies = e->nr_proxies;
int offset[nr_cells];
MPI_Request reqs_in[engine_maxproxies];
MPI_Request reqs_out[engine_maxproxies];
MPI_Status status;
const ticks tic = getticks();
/* Run through the cells and get the size of the ones that will be sent off.
*/
int count_out = 0;
for (int k = 0; k < nr_cells; k++) {
offset[k] = count_out;
if (cells[k].sendto)
count_out += (cells[k].pcell_size = cell_getsize(&cells[k]));
}
/* Allocate the pcells. */
struct pcell *pcells = NULL;
if (posix_memalign((void **)&pcells, SWIFT_CACHE_ALIGNMENT,
sizeof(struct pcell) * count_out) != 0)
error("Failed to allocate pcell buffer.");
/* Pack the cells. */
cell_next_tag = 0;
for (int k = 0; k < nr_cells; k++)
if (cells[k].sendto) {
cell_pack(&cells[k], &pcells[offset[k]]);
cells[k].pcell = &pcells[offset[k]];
}
/* Launch the proxies. */
for (int k = 0; k < nr_proxies; k++) {
proxy_cells_exch1(&e->proxies[k]);
reqs_in[k] = e->proxies[k].req_cells_count_in;
reqs_out[k] = e->proxies[k].req_cells_count_out;
}
/* Wait for each count to come in and start the recv. */
for (int k = 0; k < nr_proxies; k++) {
int pid = MPI_UNDEFINED;
if (MPI_Waitany(nr_proxies, reqs_in, &pid, &status) != MPI_SUCCESS ||
pid == MPI_UNDEFINED)
error("MPI_Waitany failed.");
// message( "request from proxy %i has arrived." , pid );
proxy_cells_exch2(&e->proxies[pid]);
}
/* Wait for all the sends to have finished too. */
if (MPI_Waitall(nr_proxies, reqs_out, MPI_STATUSES_IGNORE) != MPI_SUCCESS)
error("MPI_Waitall on sends failed.");
/* Set the requests for the cells. */
for (int k = 0; k < nr_proxies; k++) {
reqs_in[k] = e->proxies[k].req_cells_in;
reqs_out[k] = e->proxies[k].req_cells_out;
}
/* Wait for each pcell array to come in from the proxies. */
for (int k = 0; k < nr_proxies; k++) {
int pid = MPI_UNDEFINED;
if (MPI_Waitany(nr_proxies, reqs_in, &pid, &status) != MPI_SUCCESS ||
pid == MPI_UNDEFINED)
error("MPI_Waitany failed."); // message( "cell data from proxy %i has arrived." , pid );
for (int count = 0, j = 0; j < e->proxies[pid].nr_cells_in; j++)
count += cell_unpack(&e->proxies[pid].pcells_in[count],
e->proxies[pid].cells_in[j], e->s);
}
/* Wait for all the sends to have finished too. */
if (MPI_Waitall(nr_proxies, reqs_out, MPI_STATUSES_IGNORE) != MPI_SUCCESS)
error("MPI_Waitall on sends failed.");
/* Count the number of particles we need to import and re-allocate
the buffer if needed. */
size_t count_parts_in = 0, count_gparts_in = 0, count_sparts_in = 0;
for (int k = 0; k < nr_proxies; k++)
for (int j = 0; j < e->proxies[k].nr_cells_in; j++) {
if (e->proxies[k].cells_in_type[j] & proxy_cell_type_hydro)
count_parts_in += e->proxies[k].cells_in[j]->count;
if (e->proxies[k].cells_in_type[j] & proxy_cell_type_gravity)
count_gparts_in += e->proxies[k].cells_in[j]->gcount;
count_sparts_in += e->proxies[k].cells_in[j]->scount;
}
if (count_parts_in > s->size_parts_foreign) {
if (s->parts_foreign != NULL) free(s->parts_foreign);
s->size_parts_foreign = 1.1 * count_parts_in;
if (posix_memalign((void **)&s->parts_foreign, part_align,
sizeof(struct part) * s->size_parts_foreign) != 0)
error("Failed to allocate foreign part data.");
}
if (count_gparts_in > s->size_gparts_foreign) {
if (s->gparts_foreign != NULL) free(s->gparts_foreign);
s->size_gparts_foreign = 1.1 * count_gparts_in;
if (posix_memalign((void **)&s->gparts_foreign, gpart_align,
sizeof(struct gpart) * s->size_gparts_foreign) != 0)
error("Failed to allocate foreign gpart data.");
}
if (count_sparts_in > s->size_sparts_foreign) {
if (s->sparts_foreign != NULL) free(s->sparts_foreign);
s->size_sparts_foreign = 1.1 * count_sparts_in;
if (posix_memalign((void **)&s->sparts_foreign, spart_align,
sizeof(struct spart) * s->size_sparts_foreign) != 0)
error("Failed to allocate foreign spart data.");
}
/* Unpack the cells and link to the particle data. */
struct part *parts = s->parts_foreign;
struct gpart *gparts = s->gparts_foreign;
struct spart *sparts = s->sparts_foreign;
for (int k = 0; k < nr_proxies; k++) {
for (int j = 0; j < e->proxies[k].nr_cells_in; j++) {
if (e->proxies[k].cells_in_type[j] & proxy_cell_type_hydro) {
cell_link_parts(e->proxies[k].cells_in[j], parts);
parts = &parts[e->proxies[k].cells_in[j]->count];
}
if (e->proxies[k].cells_in_type[j] & proxy_cell_type_gravity) {
cell_link_gparts(e->proxies[k].cells_in[j], gparts);
gparts = &gparts[e->proxies[k].cells_in[j]->gcount];
}
cell_link_sparts(e->proxies[k].cells_in[j], sparts);
sparts = &sparts[e->proxies[k].cells_in[j]->scount];
}
}
s->nr_parts_foreign = parts - s->parts_foreign;
s->nr_gparts_foreign = gparts - s->gparts_foreign;
s->nr_sparts_foreign = sparts - s->sparts_foreign;
/* Free the pcell buffer. */
free(pcells);
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Exchange straying particles with other nodes.
*
* @param e The #engine.
* @param offset_parts The index in the parts array as of which the foreign
* parts reside.
* @param ind_part The foreign #cell ID of each part.
* @param Npart The number of stray parts, contains the number of parts received
* on return.
* @param offset_gparts The index in the gparts array as of which the foreign
* parts reside.
* @param ind_gpart The foreign #cell ID of each gpart.
* @param Ngpart The number of stray gparts, contains the number of gparts
* received on return.
* @param offset_sparts The index in the sparts array as of which the foreign
* parts reside.
* @param ind_spart The foreign #cell ID of each spart.
* @param Nspart The number of stray sparts, contains the number of sparts
* received on return.
*
* Note that this function does not mess-up the linkage between parts and
* gparts, i.e. the received particles have correct linkeage.
*/
void engine_exchange_strays(struct engine *e, size_t offset_parts,
int *ind_part, size_t *Npart, size_t offset_gparts,
int *ind_gpart, size_t *Ngpart,
size_t offset_sparts, int *ind_spart,
size_t *Nspart) {
#ifdef WITH_MPI
struct space *s = e->s;
ticks tic = getticks();
/* Re-set the proxies. */
for (int k = 0; k < e->nr_proxies; k++) {
e->proxies[k].nr_parts_out = 0;
e->proxies[k].nr_gparts_out = 0;
e->proxies[k].nr_sparts_out = 0;
}
/* Put the parts into the corresponding proxies. */
for (size_t k = 0; k < *Npart; k++) {
/* Get the target node and proxy ID. */
const int node_id = e->s->cells_top[ind_part[k]].nodeID;
if (node_id < 0 || node_id >= e->nr_nodes)
error("Bad node ID %i.", node_id);
const int pid = e->proxy_ind[node_id];
if (pid < 0) {
error(
"Do not have a proxy for the requested nodeID %i for part with "
"id=%lld, x=[%e,%e,%e].",
node_id, s->parts[offset_parts + k].id,
s->parts[offset_parts + k].x[0], s->parts[offset_parts + k].x[1],
s->parts[offset_parts + k].x[2]);
}
/* Re-link the associated gpart with the buffer offset of the part. */
if (s->parts[offset_parts + k].gpart != NULL) {
s->parts[offset_parts + k].gpart->id_or_neg_offset = -e->proxies[pid].nr_parts_out;
}
/* Load the part and xpart into the proxy. */
proxy_parts_load(&e->proxies[pid], &s->parts[offset_parts + k],
&s->xparts[offset_parts + k], 1);
}
/* Put the sparts into the corresponding proxies. */
for (size_t k = 0; k < *Nspart; k++) {
const int node_id = e->s->cells_top[ind_spart[k]].nodeID;
if (node_id < 0 || node_id >= e->nr_nodes)
error("Bad node ID %i.", node_id);
const int pid = e->proxy_ind[node_id];
if (pid < 0)
error(
"Do not have a proxy for the requested nodeID %i for part with "
"id=%lld, x=[%e,%e,%e].",
node_id, s->sparts[offset_sparts + k].id,
s->sparts[offset_sparts + k].x[0], s->sparts[offset_sparts + k].x[1],
s->sparts[offset_sparts + k].x[2]);
/* Re-link the associated gpart with the buffer offset of the spart. */
if (s->sparts[offset_sparts + k].gpart != NULL) {
s->sparts[offset_sparts + k].gpart->id_or_neg_offset =
-e->proxies[pid].nr_sparts_out;
}
/* Load the spart into the proxy */
proxy_sparts_load(&e->proxies[pid], &s->sparts[offset_sparts + k], 1);
}
/* Put the gparts into the corresponding proxies. */
for (size_t k = 0; k < *Ngpart; k++) {
const int node_id = e->s->cells_top[ind_gpart[k]].nodeID;
if (node_id < 0 || node_id >= e->nr_nodes)
error("Bad node ID %i.", node_id);
const int pid = e->proxy_ind[node_id];
if (pid < 0)
error(
"Do not have a proxy for the requested nodeID %i for part with "
"id=%lli, x=[%e,%e,%e].",
node_id, s->gparts[offset_gparts + k].id_or_neg_offset,
s->gparts[offset_gparts + k].x[0], s->gparts[offset_gparts + k].x[1],
s->gparts[offset_gparts + k].x[2]);
/* Load the gpart into the proxy */
proxy_gparts_load(&e->proxies[pid], &s->gparts[offset_gparts + k], 1);
}
/* Launch the proxies. */
MPI_Request reqs_in[4 * engine_maxproxies];
MPI_Request reqs_out[4 * engine_maxproxies];
for (int k = 0; k < e->nr_proxies; k++) {
proxy_parts_exch1(&e->proxies[k]);
reqs_in[k] = e->proxies[k].req_parts_count_in;
reqs_out[k] = e->proxies[k].req_parts_count_out;
}
/* Wait for each count to come in and start the recv. */
for (int k = 0; k < e->nr_proxies; k++) {
int pid = MPI_UNDEFINED;
if (MPI_Waitany(e->nr_proxies, reqs_in, &pid, MPI_STATUS_IGNORE) !=
MPI_SUCCESS ||
pid == MPI_UNDEFINED)
error("MPI_Waitany failed.");
// message( "request from proxy %i has arrived." , pid );
proxy_parts_exch2(&e->proxies[pid]);
}
/* Wait for all the sends to have finished too. */
if (MPI_Waitall(e->nr_proxies, reqs_out, MPI_STATUSES_IGNORE) != MPI_SUCCESS)
error("MPI_Waitall on sends failed.");
/* Count the total number of incoming particles and make sure we have
enough space to accommodate them. */
int count_parts_in = 0;
int count_gparts_in = 0;
int count_sparts_in = 0;
for (int k = 0; k < e->nr_proxies; k++) {
count_parts_in += e->proxies[k].nr_parts_in;
count_gparts_in += e->proxies[k].nr_gparts_in;
count_sparts_in += e->proxies[k].nr_sparts_in;
}
if (e->verbose) {
message("sent out %zu/%zu/%zu parts/gparts/sparts, got %i/%i/%i back.",
*Npart, *Ngpart, *Nspart, count_parts_in, count_gparts_in,
count_sparts_in);
}
/* Reallocate the particle arrays if necessary */
if (offset_parts + count_parts_in > s->size_parts) {
message("re-allocating parts array.");
s->size_parts = (offset_parts + count_parts_in) * engine_parts_size_grow;
struct part *parts_new = NULL;
struct xpart *xparts_new = NULL;
if (posix_memalign((void **)&parts_new, part_align,
sizeof(struct part) * s->size_parts) != 0 ||
posix_memalign((void **)&xparts_new, xpart_align,
sizeof(struct xpart) * s->size_parts) != 0)
error("Failed to allocate new part data.");
memcpy(parts_new, s->parts, sizeof(struct part) * offset_parts);
memcpy(xparts_new, s->xparts, sizeof(struct xpart) * offset_parts);
free(s->parts);
free(s->xparts);
s->parts = parts_new;
s->xparts = xparts_new;
for (size_t k = 0; k < offset_parts; k++) {
if (s->parts[k].gpart != NULL) {
s->parts[k].gpart->id_or_neg_offset = -k;
}
}
}
if (offset_sparts + count_sparts_in > s->size_sparts) {
message("re-allocating sparts array.");
s->size_sparts = (offset_sparts + count_sparts_in) * engine_parts_size_grow;
struct spart *sparts_new = NULL;
if (posix_memalign((void **)&sparts_new, spart_align,
sizeof(struct spart) * s->size_sparts) != 0)
error("Failed to allocate new spart data.");
memcpy(sparts_new, s->sparts, sizeof(struct spart) * offset_sparts);
free(s->sparts);
s->sparts = sparts_new;
for (size_t k = 0; k < offset_sparts; k++) {
if (s->sparts[k].gpart != NULL) {
s->sparts[k].gpart->id_or_neg_offset = -k;
}
}
}
if (offset_gparts + count_gparts_in > s->size_gparts) {
message("re-allocating gparts array.");
s->size_gparts = (offset_gparts + count_gparts_in) * engine_parts_size_grow;
struct gpart *gparts_new = NULL;
if (posix_memalign((void **)&gparts_new, gpart_align,
sizeof(struct gpart) * s->size_gparts) != 0)
error("Failed to allocate new gpart data.");
memcpy(gparts_new, s->gparts, sizeof(struct gpart) * offset_gparts);
free(s->gparts);
s->gparts = gparts_new;
for (size_t k = 0; k < offset_gparts; k++) {
if (s->gparts[k].type == swift_type_gas) {
s->parts[-s->gparts[k].id_or_neg_offset].gpart = &s->gparts[k];
} else if (s->gparts[k].type == swift_type_star) {
s->sparts[-s->gparts[k].id_or_neg_offset].gpart = &s->gparts[k];
}
}
}
/* Collect the requests for the particle data from the proxies. */
int nr_in = 0, nr_out = 0;
for (int k = 0; k < e->nr_proxies; k++) {
if (e->proxies[k].nr_parts_in > 0) {
reqs_in[4 * k] = e->proxies[k].req_parts_in;
reqs_in[4 * k + 1] = e->proxies[k].req_xparts_in;
nr_in += 2;
} else {
reqs_in[4 * k] = reqs_in[4 * k + 1] = MPI_REQUEST_NULL;
}
if (e->proxies[k].nr_gparts_in > 0) {
reqs_in[4 * k + 2] = e->proxies[k].req_gparts_in;
nr_in += 1;
} else {
reqs_in[4 * k + 2] = MPI_REQUEST_NULL;
}
if (e->proxies[k].nr_sparts_in > 0) {
reqs_in[4 * k + 3] = e->proxies[k].req_sparts_in;
nr_in += 1;
} else {
reqs_in[4 * k + 3] = MPI_REQUEST_NULL;
}
if (e->proxies[k].nr_parts_out > 0) {
reqs_out[4 * k] = e->proxies[k].req_parts_out;
reqs_out[4 * k + 1] = e->proxies[k].req_xparts_out;
nr_out += 2;
} else {
reqs_out[4 * k] = reqs_out[4 * k + 1] = MPI_REQUEST_NULL;
}
if (e->proxies[k].nr_gparts_out > 0) {
reqs_out[4 * k + 2] = e->proxies[k].req_gparts_out;
nr_out += 1;
} else {
reqs_out[4 * k + 2] = MPI_REQUEST_NULL;
}
if (e->proxies[k].nr_sparts_out > 0) {
reqs_out[4 * k + 3] = e->proxies[k].req_sparts_out;
nr_out += 1;
} else {
reqs_out[4 * k + 3] = MPI_REQUEST_NULL;
}
}
/* Wait for each part array to come in and collect the new
parts from the proxies. */
int count_parts = 0, count_gparts = 0, count_sparts = 0;
for (int k = 0; k < nr_in; k++) {
int err, pid;
if ((err = MPI_Waitany(4 * e->nr_proxies, reqs_in, &pid,
MPI_STATUS_IGNORE)) != MPI_SUCCESS) {
char buff[MPI_MAX_ERROR_STRING];
int res;
MPI_Error_string(err, buff, &res);
error("MPI_Waitany failed (%s).", buff);
}
if (pid == MPI_UNDEFINED) break;
// message( "request from proxy %i has arrived." , pid / 4 );
pid = 4 * (pid / 4);
/* If all the requests for a given proxy have arrived... */ if (reqs_in[pid + 0] == MPI_REQUEST_NULL &&
reqs_in[pid + 1] == MPI_REQUEST_NULL &&
reqs_in[pid + 2] == MPI_REQUEST_NULL &&
reqs_in[pid + 3] == MPI_REQUEST_NULL) {
/* Copy the particle data to the part/xpart/gpart arrays. */
struct proxy *prox = &e->proxies[pid / 4];
memcpy(&s->parts[offset_parts + count_parts], prox->parts_in,
sizeof(struct part) * prox->nr_parts_in);
memcpy(&s->xparts[offset_parts + count_parts], prox->xparts_in,
sizeof(struct xpart) * prox->nr_parts_in);
memcpy(&s->gparts[offset_gparts + count_gparts], prox->gparts_in,
sizeof(struct gpart) * prox->nr_gparts_in);
memcpy(&s->sparts[offset_sparts + count_sparts], prox->sparts_in,
sizeof(struct spart) * prox->nr_sparts_in);
/* for (int k = offset; k < offset + count; k++)
message(
"received particle %lli, x=[%.3e %.3e %.3e], h=%.3e, from node %i.",
s->parts[k].id, s->parts[k].x[0], s->parts[k].x[1],
s->parts[k].x[2], s->parts[k].h, p->nodeID); */
/* Re-link the gparts. */
for (int kk = 0; kk < prox->nr_gparts_in; kk++) {
struct gpart *gp = &s->gparts[offset_gparts + count_gparts + kk];
if (gp->type == swift_type_gas) {
struct part *p =
&s->parts[offset_parts + count_parts - gp->id_or_neg_offset];
gp->id_or_neg_offset = s->parts - p;
p->gpart = gp;
} else if (gp->type == swift_type_star) {
struct spart *sp =
&s->sparts[offset_sparts + count_sparts - gp->id_or_neg_offset];
gp->id_or_neg_offset = s->sparts - sp;
sp->gpart = gp;
}
}
/* Advance the counters. */
count_parts += prox->nr_parts_in;
count_gparts += prox->nr_gparts_in;
count_sparts += prox->nr_sparts_in;
}
}
/* Wait for all the sends to have finished too. */
if (nr_out > 0)
if (MPI_Waitall(4 * e->nr_proxies, reqs_out, MPI_STATUSES_IGNORE) !=
MPI_SUCCESS)
error("MPI_Waitall on sends failed.");
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
/* Return the number of harvested parts. */
*Npart = count_parts;
*Ngpart = count_gparts;
*Nspart = count_sparts;
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Exchanges the top-level multipoles between all the nodes
* such that every node has a multipole for each top-level cell.
*
* @param e The #engine.
*/void engine_exchange_top_multipoles(struct engine *e) {
#ifdef WITH_MPI
#ifdef SWIFT_DEBUG_CHECKS
for (int i = 0; i < e->s->nr_cells; ++i) {
const struct gravity_tensors *m = &e->s->multipoles_top[i];
if (e->s->cells_top[i].nodeID == engine_rank) {
if (m->m_pole.M_000 > 0.) {
if (m->CoM[0] < 0. || m->CoM[0] > e->s->dim[0])
error("Invalid multipole position in X");
if (m->CoM[1] < 0. || m->CoM[1] > e->s->dim[1])
error("Invalid multipole position in Y");
if (m->CoM[2] < 0. || m->CoM[2] > e->s->dim[2])
error("Invalid multipole position in Z");
}
} else {
if (m->m_pole.M_000 != 0.) error("Non-zero mass for foreign m-pole");
if (m->CoM[0] != 0.) error("Non-zero position in X for foreign m-pole");
if (m->CoM[1] != 0.) error("Non-zero position in Y for foreign m-pole");
if (m->CoM[2] != 0.) error("Non-zero position in Z for foreign m-pole");
if (m->m_pole.num_gpart != 0)
error("Non-zero gpart count in foreign m-pole");
}
}
#endif
/* Each node (space) has constructed its own top-level multipoles.
* We now need to make sure every other node has a copy of everything.
*
* WARNING: Adult stuff ahead: don't do this at home!
*
* Since all nodes have their top-level multi-poles computed
* and all foreign ones set to 0 (all bytes), we can gather all the m-poles
* by doing a bit-wise OR reduction across all the nodes directly in
* place inside the multi-poles_top array.
* This only works if the foreign m-poles on every nodes are zeroed and no
* multi-pole is present on more than one node (two things guaranteed by the
* domain decomposition).
*/
MPI_Allreduce(MPI_IN_PLACE, e->s->multipoles_top,
e->s->nr_cells * sizeof(struct gravity_tensors), MPI_BYTE,
MPI_BOR, MPI_COMM_WORLD);
#ifdef SWIFT_DEBUG_CHECKS
long long counter = 0;
/* Let's check that what we received makes sense */
for (int i = 0; i < e->s->nr_cells; ++i) {
const struct gravity_tensors *m = &e->s->multipoles_top[i];
counter += m->m_pole.num_gpart;
if (m->m_pole.M_000 > 0.) {
if (m->CoM[0] < 0. || m->CoM[0] > e->s->dim[0])
error("Invalid multipole position in X");
if (m->CoM[1] < 0. || m->CoM[1] > e->s->dim[1])
error("Invalid multipole position in Y");
if (m->CoM[2] < 0. || m->CoM[2] > e->s->dim[2])
error("Invalid multipole position in Z");
}
}
if (counter != e->total_nr_gparts)
error("Total particles in multipoles inconsistent with engine");
#endif
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
void engine_exchange_proxy_multipoles(struct engine *e) {
#ifdef WITH_MPI
const ticks tic = getticks();
/* Start by counting the number of cells to send and receive */
int count_send = 0;
int count_recv = 0;
int count_send_requests = 0;
int count_recv_requests = 0;
/* Loop over the proxies. */
for (int pid = 0; pid < e->nr_proxies; pid++) {
/* Get a handle on the proxy. */
const struct proxy *p = &e->proxies[pid];
/* Now collect the number of requests associated */
count_recv_requests += p->nr_cells_in;
count_send_requests += p->nr_cells_out;
/* And the actual number of things we are going to ship */
for (int k = 0; k < p->nr_cells_in; k++)
count_recv += p->cells_in[k]->pcell_size;
for (int k = 0; k < p->nr_cells_out; k++)
count_send += p->cells_out[k]->pcell_size;
}
/* Allocate the buffers for the packed data */
struct gravity_tensors *buffer_send = NULL;
if (posix_memalign((void **)&buffer_send, SWIFT_CACHE_ALIGNMENT,
count_send * sizeof(struct gravity_tensors)) != 0)
error("Unable to allocate memory for multipole transactions");
struct gravity_tensors *buffer_recv = NULL;
if (posix_memalign((void **)&buffer_recv, SWIFT_CACHE_ALIGNMENT,
count_recv * sizeof(struct gravity_tensors)) != 0)
error("Unable to allocate memory for multipole transactions");
/* Also allocate the MPI requests */
const int count_requests = count_send_requests + count_recv_requests;
MPI_Request *requests =
(MPI_Request *)malloc(sizeof(MPI_Request) * count_requests);
if (requests == NULL) error("Unable to allocate memory for MPI requests");
int this_request = 0;
int this_recv = 0;
int this_send = 0;
/* Loop over the proxies to issue the receives. */
for (int pid = 0; pid < e->nr_proxies; pid++) {
/* Get a handle on the proxy. */
const struct proxy *p = &e->proxies[pid];
for (int k = 0; k < p->nr_cells_in; k++) {
const int num_elements = p->cells_in[k]->pcell_size;
/* Receive everything */
MPI_Irecv(&buffer_recv[this_recv],
num_elements * sizeof(struct gravity_tensors), MPI_BYTE,
p->cells_in[k]->nodeID, p->cells_in[k]->tag, MPI_COMM_WORLD,
&requests[this_request]);
/* Move to the next slot in the buffers */
this_recv += num_elements;
this_request++;
}
/* Loop over the proxies to issue the sends. */
for (int k = 0; k < p->nr_cells_out; k++) {
/* Number of multipoles in this cell hierarchy */
const int num_elements = p->cells_out[k]->pcell_size;
/* Let's pack everything recursively */
cell_pack_multipoles(p->cells_out[k], &buffer_send[this_send]);
/* Send everything (note the use of cells_in[0] to get the correct node
* ID. */
MPI_Isend(&buffer_send[this_send],
num_elements * sizeof(struct gravity_tensors), MPI_BYTE,
p->cells_in[0]->nodeID, p->cells_out[k]->tag, MPI_COMM_WORLD,
&requests[this_request]);
/* Move to the next slot in the buffers */
this_send += num_elements;
this_request++;
}
}
/* Wait for all the requests to arrive home */
MPI_Status *stats = (MPI_Status *)malloc(count_requests * sizeof(MPI_Status));
int res;
if ((res = MPI_Waitall(count_requests, requests, stats)) != MPI_SUCCESS) {
for (int k = 0; k < count_requests; ++k) {
char buff[MPI_MAX_ERROR_STRING];
MPI_Error_string(stats[k].MPI_ERROR, buff, &res);
message("request from source %i, tag %i has error '%s'.",
stats[k].MPI_SOURCE, stats[k].MPI_TAG, buff);
}
error("Failed during waitall for multipole data.");
}
/* Let's now unpack the multipoles at the right place */
this_recv = 0;
for (int pid = 0; pid < e->nr_proxies; pid++) {
/* Get a handle on the proxy. */
const struct proxy *p = &e->proxies[pid];
for (int k = 0; k < p->nr_cells_in; k++) {
const int num_elements = p->cells_in[k]->pcell_size;
#ifdef SWIFT_DEBUG_CHECKS
/* Check that the first element (top-level cell's multipole) matches what
* we received */
if (p->cells_in[k]->multipole->m_pole.num_gpart !=
buffer_recv[this_recv].m_pole.num_gpart)
error("Current: M_000=%e num_gpart=%lld\n New: M_000=%e num_gpart=%lld",
p->cells_in[k]->multipole->m_pole.M_000,
p->cells_in[k]->multipole->m_pole.num_gpart,
buffer_recv[this_recv].m_pole.M_000,
buffer_recv[this_recv].m_pole.num_gpart);
#endif
/* Unpack recursively */
cell_unpack_multipoles(p->cells_in[k], &buffer_recv[this_recv]);
/* Move to the next slot in the buffers */
this_recv += num_elements;
}
}
/* Free everything */
free(stats); free(buffer_send);
free(buffer_recv);
free(requests);
/* How much time did this take? */
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Constructs the top-level tasks for the short-range gravity
* and long-range gravity interactions.
*
* - All top-cells get a self task.
* - All pairs within range according to the multipole acceptance
* criterion get a pair task.
*/
void engine_make_self_gravity_tasks_mapper(void *map_data, int num_elements,
void *extra_data) {
struct engine *e = ((struct engine **)extra_data)[0];
struct space *s = e->s;
struct scheduler *sched = &e->sched;
const int nodeID = e->nodeID;
const int periodic = s->periodic;
const double dim[3] = {s->dim[0], s->dim[1], s->dim[2]};
const int cdim[3] = {s->cdim[0], s->cdim[1], s->cdim[2]};
struct cell *cells = s->cells_top;
const double max_distance = e->mesh->r_cut_max;
/* Loop through the elements, which are just byte offsets from NULL. */
for (int ind = 0; ind < num_elements; ind++) {
/* Get the cell index. */
const int cid = (size_t)(map_data) + ind;
/* Get the cell */
struct cell *ci = &cells[cid];
/* Skip cells without gravity particles */
if (ci->gcount == 0) continue;
/* Is that cell local ? */
if (ci->nodeID != nodeID) continue;
/* If the cells is local build a self-interaction */
scheduler_addtask(sched, task_type_self, task_subtype_grav, 0, 0, ci, NULL);
/* Recover the multipole information */
const struct gravity_tensors *const multi_i = ci->multipole;
const double CoM_i[3] = {multi_i->CoM[0], multi_i->CoM[1], multi_i->CoM[2]};
#ifdef SWIFT_DEBUG_CHECKS
if (multi_i->r_max != multi_i->r_max_rebuild)
error(
"Multipole size not equal ot it's size after rebuild. But we just "
"rebuilt...");
#endif
/* Loop over every other cell */
for (int ii = 0; ii < cdim[0]; ii++) {
for (int jj = 0; jj < cdim[1]; jj++) {
for (int kk = 0; kk < cdim[2]; kk++) {
/* Get the cell */
const int cjd = cell_getid(cdim, ii, jj, kk); struct cell *cj = &cells[cjd];
/* Avoid duplicates of local pairs*/
if (cid <= cjd && cj->nodeID == nodeID) continue;
/* Skip cells without gravity particles */
if (cj->gcount == 0) continue;
/* Recover the multipole information */
const struct gravity_tensors *const multi_j = cj->multipole;
/* Get the distance between the CoMs */
double dx = CoM_i[0] - multi_j->CoM[0];
double dy = CoM_i[1] - multi_j->CoM[1];
double dz = CoM_i[2] - multi_j->CoM[2];
/* Apply BC */
if (periodic) {
dx = nearest(dx, dim[0]);
dy = nearest(dy, dim[1]);
dz = nearest(dz, dim[2]);
}
const double r2 = dx * dx + dy * dy + dz * dz;
/* Minimal distance between any pair of particles */
const double min_radius =
sqrt(r2) - (multi_i->r_max + multi_j->r_max);
/* Are we beyond the distance where the truncated forces are 0 ?*/
if (periodic && min_radius > max_distance) continue;
/* Are the cells too close for a MM interaction ? */
if (!cell_can_use_pair_mm(ci, cj, e, s)) {
/* Ok, we need to add a direct pair calculation */
scheduler_addtask(sched, task_type_pair, task_subtype_grav, 0, 0,
ci, cj);
}
}
}
}
}
}
/**
* @brief Constructs the top-level tasks for the short-range gravity
* interactions (master function).
*
* - Create the FFT task and the array of gravity ghosts.
* - Call the mapper function to create the other tasks.
*
* @param e The #engine.
*/
void engine_make_self_gravity_tasks(struct engine *e) {
struct space *s = e->s;
/* struct scheduler *sched = &e->sched; */
/* const int periodic = s->periodic; */
/* const int cdim_ghost[3] = {s->cdim[0] / 4 + 1, s->cdim[1] / 4 + 1, */
/* s->cdim[2] / 4 + 1}; */
struct task **ghosts = NULL;
// const int n_ghosts = cdim_ghost[0] * cdim_ghost[1] * cdim_ghost[2] * 2;
/* Cretae the multipole self and pair tasks. */
void *extra_data[2] = {e, ghosts};
threadpool_map(&e->threadpool, engine_make_self_gravity_tasks_mapper, NULL,
s->nr_cells, 1, 0, extra_data);
}
/** * @brief Constructs the top-level tasks for the external gravity.
*
* @param e The #engine.
*/
void engine_make_external_gravity_tasks(struct engine *e) {
struct space *s = e->s;
struct scheduler *sched = &e->sched;
const int nodeID = e->nodeID;
struct cell *cells = s->cells_top;
const int nr_cells = s->nr_cells;
for (int cid = 0; cid < nr_cells; ++cid) {
struct cell *ci = &cells[cid];
/* Skip cells without gravity particles */
if (ci->gcount == 0) continue;
/* Is that neighbour local ? */
if (ci->nodeID != nodeID) continue;
/* If the cell is local, build a self-interaction */
scheduler_addtask(sched, task_type_self, task_subtype_external_grav, 0, 0,
ci, NULL);
}
}
/**
* @brief Constructs the top-level pair tasks for the first hydro loop over
* neighbours
*
* Here we construct all the tasks for all possible neighbouring non-empty
* local cells in the hierarchy. No dependencies are being added thus far.
* Additional loop over neighbours can later be added by simply duplicating
* all the tasks created by this function.
*
* @param map_data Offset of first two indices disguised as a pointer.
* @param num_elements Number of cells to traverse.
* @param extra_data The #engine.
*/
void engine_make_hydroloop_tasks_mapper(void *map_data, int num_elements,
void *extra_data) {
/* Extract the engine pointer. */
struct engine *e = (struct engine *)extra_data;
struct space *s = e->s;
struct scheduler *sched = &e->sched;
const int nodeID = e->nodeID;
const int *cdim = s->cdim;
struct cell *cells = s->cells_top;
/* Loop through the elements, which are just byte offsets from NULL. */
for (int ind = 0; ind < num_elements; ind++) {
/* Get the cell index. */
const int cid = (size_t)(map_data) + ind;
const int i = cid / (cdim[1] * cdim[2]);
const int j = (cid / cdim[2]) % cdim[1];
const int k = cid % cdim[2];
/* Get the cell */
struct cell *ci = &cells[cid];
/* Skip cells without hydro particles */
if (ci->count == 0) continue;
/* If the cells is local build a self-interaction */
if (ci->nodeID == nodeID) scheduler_addtask(sched, task_type_self, task_subtype_density, 0, 0, ci,
NULL);
/* Now loop over all the neighbours of this cell */
for (int ii = -1; ii < 2; ii++) {
int iii = i + ii;
if (!s->periodic && (iii < 0 || iii >= cdim[0])) continue;
iii = (iii + cdim[0]) % cdim[0];
for (int jj = -1; jj < 2; jj++) {
int jjj = j + jj;
if (!s->periodic && (jjj < 0 || jjj >= cdim[1])) continue;
jjj = (jjj + cdim[1]) % cdim[1];
for (int kk = -1; kk < 2; kk++) {
int kkk = k + kk;
if (!s->periodic && (kkk < 0 || kkk >= cdim[2])) continue;
kkk = (kkk + cdim[2]) % cdim[2];
/* Get the neighbouring cell */
const int cjd = cell_getid(cdim, iii, jjj, kkk);
struct cell *cj = &cells[cjd];
/* Is that neighbour local and does it have particles ? */
if (cid >= cjd || cj->count == 0 ||
(ci->nodeID != nodeID && cj->nodeID != nodeID))
continue;
/* Construct the pair task */
const int sid = sortlistID[(kk + 1) + 3 * ((jj + 1) + 3 * (ii + 1))];
scheduler_addtask(sched, task_type_pair, task_subtype_density, sid, 0,
ci, cj);
}
}
}
}
}
/**
* @brief Counts the tasks associated with one cell and constructs the links
*
* For each hydrodynamic and gravity task, construct the links with
* the corresponding cell. Similarly, construct the dependencies for
* all the sorting tasks.
*/
void engine_count_and_link_tasks_mapper(void *map_data, int num_elements,
void *extra_data) {
struct engine *e = (struct engine *)extra_data;
struct scheduler *const sched = &e->sched;
for (int ind = 0; ind < num_elements; ind++) {
struct task *const t = &((struct task *)map_data)[ind];
struct cell *const ci = t->ci;
struct cell *const cj = t->cj;
/* Link sort tasks to all the higher sort task. */
if (t->type == task_type_sort) {
for (struct cell *finger = t->ci->parent; finger != NULL;
finger = finger->parent)
if (finger->sorts != NULL) scheduler_addunlock(sched, t, finger->sorts);
}
/* Link self tasks to cells. */
else if (t->type == task_type_self) {
atomic_inc(&ci->nr_tasks);
if (t->subtype == task_subtype_density) {
engine_addlink(e, &ci->density, t);
}
if (t->subtype == task_subtype_grav) {
engine_addlink(e, &ci->grav, t); }
if (t->subtype == task_subtype_external_grav) {
engine_addlink(e, &ci->grav, t);
}
/* Link pair tasks to cells. */
} else if (t->type == task_type_pair) {
atomic_inc(&ci->nr_tasks);
atomic_inc(&cj->nr_tasks);
if (t->subtype == task_subtype_density) {
engine_addlink(e, &ci->density, t);
engine_addlink(e, &cj->density, t);
}
if (t->subtype == task_subtype_grav) {
engine_addlink(e, &ci->grav, t);
engine_addlink(e, &cj->grav, t);
}
if (t->subtype == task_subtype_external_grav) {
error("Found a pair/external-gravity task...");
}
/* Link sub-self tasks to cells. */
} else if (t->type == task_type_sub_self) {
atomic_inc(&ci->nr_tasks);
if (t->subtype == task_subtype_density) {
engine_addlink(e, &ci->density, t);
}
if (t->subtype == task_subtype_grav) {
engine_addlink(e, &ci->grav, t);
}
if (t->subtype == task_subtype_external_grav) {
engine_addlink(e, &ci->grav, t);
}
/* Link sub-pair tasks to cells. */
} else if (t->type == task_type_sub_pair) {
atomic_inc(&ci->nr_tasks);
atomic_inc(&cj->nr_tasks);
if (t->subtype == task_subtype_density) {
engine_addlink(e, &ci->density, t);
engine_addlink(e, &cj->density, t);
}
if (t->subtype == task_subtype_grav) {
engine_addlink(e, &ci->grav, t);
engine_addlink(e, &cj->grav, t);
}
if (t->subtype == task_subtype_external_grav) {
error("Found a sub-pair/external-gravity task...");
}
}
}
}
/**
* @brief Creates the dependency network for the gravity tasks of a given cell.
*
* @param sched The #scheduler.
* @param gravity The gravity task to link.
* @param c The cell.
*/
static inline void engine_make_self_gravity_dependencies(
struct scheduler *sched, struct task *gravity, struct cell *c) {
/* init --> gravity --> grav_down --> kick */
scheduler_addunlock(sched, c->super_gravity->drift_gpart, gravity);
scheduler_addunlock(sched, c->super_gravity->init_grav, gravity);
scheduler_addunlock(sched, gravity, c->super_gravity->grav_down);
}
/** * @brief Creates the dependency network for the external gravity tasks of a
* given cell.
*
* @param sched The #scheduler.
* @param gravity The gravity task to link.
* @param c The cell.
*/
static inline void engine_make_external_gravity_dependencies(
struct scheduler *sched, struct task *gravity, struct cell *c) {
/* init --> external gravity --> kick */
scheduler_addunlock(sched, c->super_gravity->drift_gpart, gravity);
scheduler_addunlock(sched, gravity, c->super->end_force);
}
/**
* @brief Creates all the task dependencies for the gravity
*
* @param e The #engine
*/
void engine_link_gravity_tasks(struct engine *e) {
struct scheduler *sched = &e->sched;
const int nodeID = e->nodeID;
const int nr_tasks = sched->nr_tasks;
for (int k = 0; k < nr_tasks; k++) {
/* Get a pointer to the task. */
struct task *t = &sched->tasks[k];
/* Self-interaction for self-gravity? */
if (t->type == task_type_self && t->subtype == task_subtype_grav) {
engine_make_self_gravity_dependencies(sched, t, t->ci);
}
/* Self-interaction for external gravity ? */
if (t->type == task_type_self && t->subtype == task_subtype_external_grav) {
engine_make_external_gravity_dependencies(sched, t, t->ci);
}
/* Otherwise, pair interaction? */
else if (t->type == task_type_pair && t->subtype == task_subtype_grav) {
if (t->ci->nodeID == nodeID) {
engine_make_self_gravity_dependencies(sched, t, t->ci);
}
if (t->cj->nodeID == nodeID &&
t->ci->super_gravity != t->cj->super_gravity) {
engine_make_self_gravity_dependencies(sched, t, t->cj);
}
}
/* Otherwise, sub-self interaction? */
else if (t->type == task_type_sub_self && t->subtype == task_subtype_grav) {
if (t->ci->nodeID == nodeID) {
engine_make_self_gravity_dependencies(sched, t, t->ci);
}
}
/* Sub-self-interaction for external gravity ? */
else if (t->type == task_type_sub_self && t->subtype == task_subtype_external_grav) {
if (t->ci->nodeID == nodeID) {
engine_make_external_gravity_dependencies(sched, t, t->ci);
}
}
/* Otherwise, sub-pair interaction? */
else if (t->type == task_type_sub_pair && t->subtype == task_subtype_grav) {
if (t->ci->nodeID == nodeID) {
engine_make_self_gravity_dependencies(sched, t, t->ci);
}
if (t->cj->nodeID == nodeID &&
t->ci->super_gravity != t->cj->super_gravity) {
engine_make_self_gravity_dependencies(sched, t, t->cj);
}
}
}
}
#ifdef EXTRA_HYDRO_LOOP
/**
* @brief Creates the dependency network for the hydro tasks of a given cell.
*
* @param sched The #scheduler.
* @param density The density task to link.
* @param gradient The gradient task to link.
* @param force The force task to link.
* @param c The cell.
* @param with_cooling Do we have a cooling task ?
*/
static inline void engine_make_hydro_loops_dependencies(
struct scheduler *sched, struct task *density, struct task *gradient,
struct task *force, struct cell *c, int with_cooling) {
/* density loop --> ghost --> gradient loop --> extra_ghost */
/* extra_ghost --> force loop */
scheduler_addunlock(sched, density, c->super_hydro->ghost_in);
scheduler_addunlock(sched, c->super_hydro->ghost_out, gradient);
scheduler_addunlock(sched, gradient, c->super_hydro->extra_ghost);
scheduler_addunlock(sched, c->super_hydro->extra_ghost, force);
}
#else
/**
* @brief Creates the dependency network for the hydro tasks of a given cell.
*
* @param sched The #scheduler.
* @param density The density task to link.
* @param force The force task to link.
* @param c The cell.
* @param with_cooling Are we running with cooling switched on ?
*/
static inline void engine_make_hydro_loops_dependencies(struct scheduler *sched,
struct task *density,
struct task *force,
struct cell *c,
int with_cooling) {
/* density loop --> ghost --> force loop */
scheduler_addunlock(sched, density, c->super_hydro->ghost_in);
scheduler_addunlock(sched, c->super_hydro->ghost_out, force);
}
#endif
/** * @brief Duplicates the first hydro loop and construct all the
* dependencies for the hydro part
*
* This is done by looping over all the previously constructed tasks
* and adding another task involving the same cells but this time
* corresponding to the second hydro loop over neighbours.
* With all the relevant tasks for a given cell available, we construct
* all the dependencies for that cell.
*/
void engine_make_extra_hydroloop_tasks_mapper(void *map_data, int num_elements,
void *extra_data) {
struct engine *e = (struct engine *)extra_data;
struct scheduler *sched = &e->sched;
const int nodeID = e->nodeID;
const int with_cooling = (e->policy & engine_policy_cooling);
for (int ind = 0; ind < num_elements; ind++) {
struct task *t = &((struct task *)map_data)[ind];
/* Sort tasks depend on the drift of the cell. */
if (t->type == task_type_sort && t->ci->nodeID == engine_rank) {
scheduler_addunlock(sched, t->ci->super_hydro->drift_part, t);
}
/* Self-interaction? */
else if (t->type == task_type_self && t->subtype == task_subtype_density) {
/* Make the self-density tasks depend on the drift only. */
scheduler_addunlock(sched, t->ci->super_hydro->drift_part, t);
#ifdef EXTRA_HYDRO_LOOP
/* Start by constructing the task for the second and third hydro loop. */
struct task *t2 = scheduler_addtask(
sched, task_type_self, task_subtype_gradient, 0, 0, t->ci, NULL);
struct task *t3 = scheduler_addtask(
sched, task_type_self, task_subtype_force, 0, 0, t->ci, NULL);
/* Add the link between the new loops and the cell */
engine_addlink(e, &t->ci->gradient, t2);
engine_addlink(e, &t->ci->force, t3);
/* Now, build all the dependencies for the hydro */
engine_make_hydro_loops_dependencies(sched, t, t2, t3, t->ci,
with_cooling);
scheduler_addunlock(sched, t3, t->ci->super->end_force);
#else
/* Start by constructing the task for the second hydro loop */
struct task *t2 = scheduler_addtask(
sched, task_type_self, task_subtype_force, 0, 0, t->ci, NULL);
/* Add the link between the new loop and the cell */
engine_addlink(e, &t->ci->force, t2);
/* Now, build all the dependencies for the hydro */
engine_make_hydro_loops_dependencies(sched, t, t2, t->ci, with_cooling);
scheduler_addunlock(sched, t2, t->ci->super->end_force);
#endif
}
/* Otherwise, pair interaction? */
else if (t->type == task_type_pair && t->subtype == task_subtype_density) {
/* Make all density tasks depend on the drift and the sorts. */
if (t->ci->nodeID == engine_rank)
scheduler_addunlock(sched, t->ci->super_hydro->drift_part, t);
scheduler_addunlock(sched, t->ci->super_hydro->sorts, t);
if (t->ci->super_hydro != t->cj->super_hydro) {
if (t->cj->nodeID == engine_rank) scheduler_addunlock(sched, t->cj->super_hydro->drift_part, t);
scheduler_addunlock(sched, t->cj->super_hydro->sorts, t);
}
#ifdef EXTRA_HYDRO_LOOP
/* Start by constructing the task for the second and third hydro loop */
struct task *t2 = scheduler_addtask(
sched, task_type_pair, task_subtype_gradient, 0, 0, t->ci, t->cj);
struct task *t3 = scheduler_addtask(
sched, task_type_pair, task_subtype_force, 0, 0, t->ci, t->cj);
/* Add the link between the new loop and both cells */
engine_addlink(e, &t->ci->gradient, t2);
engine_addlink(e, &t->cj->gradient, t2);
engine_addlink(e, &t->ci->force, t3);
engine_addlink(e, &t->cj->force, t3);
/* Now, build all the dependencies for the hydro for the cells */
/* that are local and are not descendant of the same super_hydro-cells */
if (t->ci->nodeID == nodeID) {
engine_make_hydro_loops_dependencies(sched, t, t2, t3, t->ci,
with_cooling);
scheduler_addunlock(sched, t3, t->ci->super->end_force);
}
if (t->cj->nodeID == nodeID) {
if (t->ci->super_hydro != t->cj->super_hydro)
engine_make_hydro_loops_dependencies(sched, t, t2, t3, t->cj,
with_cooling);
if (t->ci->super != t->cj->super)
scheduler_addunlock(sched, t3, t->cj->super->end_force);
}
#else
/* Start by constructing the task for the second hydro loop */
struct task *t2 = scheduler_addtask(
sched, task_type_pair, task_subtype_force, 0, 0, t->ci, t->cj);
/* Add the link between the new loop and both cells */
engine_addlink(e, &t->ci->force, t2);
engine_addlink(e, &t->cj->force, t2);
/* Now, build all the dependencies for the hydro for the cells */
/* that are local and are not descendant of the same super_hydro-cells */
if (t->ci->nodeID == nodeID) {
engine_make_hydro_loops_dependencies(sched, t, t2, t->ci, with_cooling);
scheduler_addunlock(sched, t2, t->ci->super->end_force);
}
if (t->cj->nodeID == nodeID) {
if (t->ci->super_hydro != t->cj->super_hydro)
engine_make_hydro_loops_dependencies(sched, t, t2, t->cj,
with_cooling);
if (t->ci->super != t->cj->super)
scheduler_addunlock(sched, t2, t->cj->super->end_force);
}
#endif
}
/* Otherwise, sub-self interaction? */
else if (t->type == task_type_sub_self &&
t->subtype == task_subtype_density) {
/* Make all density tasks depend on the drift and sorts. */
scheduler_addunlock(sched, t->ci->super_hydro->drift_part, t);
scheduler_addunlock(sched, t->ci->super_hydro->sorts, t);
#ifdef EXTRA_HYDRO_LOOP
/* Start by constructing the task for the second and third hydro loop */
struct task *t2 =
scheduler_addtask(sched, task_type_sub_self, task_subtype_gradient,
t->flags, 0, t->ci, t->cj);
struct task *t3 =
scheduler_addtask(sched, task_type_sub_self, task_subtype_force,
t->flags, 0, t->ci, t->cj);
/* Add the link between the new loop and the cell */
engine_addlink(e, &t->ci->gradient, t2);
engine_addlink(e, &t->ci->force, t3);
/* Now, build all the dependencies for the hydro for the cells */
/* that are local and are not descendant of the same super_hydro-cells */
if (t->ci->nodeID == nodeID) {
engine_make_hydro_loops_dependencies(sched, t, t2, t3, t->ci,
with_cooling);
scheduler_addunlock(sched, t3, t->ci->super->end_force);
}
#else
/* Start by constructing the task for the second hydro loop */
struct task *t2 =
scheduler_addtask(sched, task_type_sub_self, task_subtype_force,
t->flags, 0, t->ci, t->cj);
/* Add the link between the new loop and the cell */
engine_addlink(e, &t->ci->force, t2);
/* Now, build all the dependencies for the hydro for the cells */
/* that are local and are not descendant of the same super_hydro-cells */
if (t->ci->nodeID == nodeID) {
engine_make_hydro_loops_dependencies(sched, t, t2, t->ci, with_cooling);
scheduler_addunlock(sched, t2, t->ci->super->end_force);
} else
error("oo");
#endif
}
/* Otherwise, sub-pair interaction? */
else if (t->type == task_type_sub_pair &&
t->subtype == task_subtype_density) {
/* Make all density tasks depend on the drift. */
if (t->ci->nodeID == engine_rank)
scheduler_addunlock(sched, t->ci->super_hydro->drift_part, t);
scheduler_addunlock(sched, t->ci->super_hydro->sorts, t);
if (t->ci->super_hydro != t->cj->super_hydro) {
if (t->cj->nodeID == engine_rank)
scheduler_addunlock(sched, t->cj->super_hydro->drift_part, t);
scheduler_addunlock(sched, t->cj->super_hydro->sorts, t);
}
#ifdef EXTRA_HYDRO_LOOP
/* Start by constructing the task for the second and third hydro loop */
struct task *t2 =
scheduler_addtask(sched, task_type_sub_pair, task_subtype_gradient,
t->flags, 0, t->ci, t->cj);
struct task *t3 =
scheduler_addtask(sched, task_type_sub_pair, task_subtype_force,
t->flags, 0, t->ci, t->cj);
/* Add the link between the new loop and both cells */
engine_addlink(e, &t->ci->gradient, t2);
engine_addlink(e, &t->cj->gradient, t2);
engine_addlink(e, &t->ci->force, t3);
engine_addlink(e, &t->cj->force, t3);
/* Now, build all the dependencies for the hydro for the cells */ /* that are local and are not descendant of the same super_hydro-cells */
if (t->ci->nodeID == nodeID) {
engine_make_hydro_loops_dependencies(sched, t, t2, t3, t->ci,
with_cooling);
scheduler_addunlock(sched, t3, t->ci->super->end_force);
}
if (t->cj->nodeID == nodeID) {
if (t->ci->super_hydro != t->cj->super_hydro)
engine_make_hydro_loops_dependencies(sched, t, t2, t3, t->cj,
with_cooling);
if (t->ci->super != t->cj->super)
scheduler_addunlock(sched, t3, t->cj->super->end_force);
}
#else
/* Start by constructing the task for the second hydro loop */
struct task *t2 =
scheduler_addtask(sched, task_type_sub_pair, task_subtype_force,
t->flags, 0, t->ci, t->cj);
/* Add the link between the new loop and both cells */
engine_addlink(e, &t->ci->force, t2);
engine_addlink(e, &t->cj->force, t2);
/* Now, build all the dependencies for the hydro for the cells */
/* that are local and are not descendant of the same super_hydro-cells */
if (t->ci->nodeID == nodeID) {
engine_make_hydro_loops_dependencies(sched, t, t2, t->ci, with_cooling);
scheduler_addunlock(sched, t2, t->ci->super->end_force);
}
if (t->cj->nodeID == nodeID) {
if (t->ci->super_hydro != t->cj->super_hydro)
engine_make_hydro_loops_dependencies(sched, t, t2, t->cj,
with_cooling);
if (t->ci->super != t->cj->super)
scheduler_addunlock(sched, t2, t->cj->super->end_force);
}
#endif
}
}
}
/**
* @brief Fill the #space's task list.
*
* @param e The #engine we are working with.
*/
void engine_maketasks(struct engine *e) {
struct space *s = e->s;
struct scheduler *sched = &e->sched;
struct cell *cells = s->cells_top;
const int nr_cells = s->nr_cells;
const ticks tic = getticks();
/* Re-set the scheduler. */
scheduler_reset(sched, engine_estimate_nr_tasks(e));
/* Construct the firt hydro loop over neighbours */
if (e->policy & engine_policy_hydro) {
threadpool_map(&e->threadpool, engine_make_hydroloop_tasks_mapper, NULL,
s->nr_cells, 1, 0, e);
}
/* Add the self gravity tasks. */
if (e->policy & engine_policy_self_gravity) engine_make_self_gravity_tasks(e);
/* Add the external gravity tasks. */
if (e->policy & engine_policy_external_gravity)
engine_make_external_gravity_tasks(e);
if (e->sched.nr_tasks == 0 && (s->nr_gparts > 0 || s->nr_parts > 0))
error("We have particles but no hydro or gravity tasks were created.");
/* Split the tasks. */
scheduler_splittasks(sched);
#ifdef SWIFT_DEBUG_CHECKS
/* Verify that we are not left with invalid tasks */
for (int i = 0; i < e->sched.nr_tasks; ++i) {
const struct task *t = &e->sched.tasks[i];
if (t->ci == NULL && t->cj != NULL && !t->skip) error("Invalid task");
}
#endif
/* Free the old list of cell-task links. */
if (e->links != NULL) free(e->links);
e->size_links = 0;
/* The maximum number of links is the
* number of cells (s->tot_cells) times the number of neighbours (26) times
* the number of interaction types, so 26 * 2 (density, force) pairs
* and 2 (density, force) self.
*/
#ifdef EXTRA_HYDRO_LOOP
const size_t hydro_tasks_per_cell = 27 * 3;
#else
const size_t hydro_tasks_per_cell = 27 * 2;
#endif
const size_t self_grav_tasks_per_cell = 125;
const size_t ext_grav_tasks_per_cell = 1;
if (e->policy & engine_policy_hydro)
e->size_links += s->tot_cells * hydro_tasks_per_cell;
if (e->policy & engine_policy_external_gravity)
e->size_links += s->tot_cells * ext_grav_tasks_per_cell;
if (e->policy & engine_policy_self_gravity)
e->size_links += s->tot_cells * self_grav_tasks_per_cell;
/* Allocate the new list */
if ((e->links = (struct link *)malloc(sizeof(struct link) * e->size_links)) ==
NULL)
error("Failed to allocate cell-task links.");
e->nr_links = 0;
/* Count the number of tasks associated with each cell and
store the density tasks in each cell, and make each sort
depend on the sorts of its progeny. */
threadpool_map(&e->threadpool, engine_count_and_link_tasks_mapper,
sched->tasks, sched->nr_tasks, sizeof(struct task), 0, e);
/* Now that the self/pair tasks are at the right level, set the super
* pointers. */
threadpool_map(&e->threadpool, cell_set_super_mapper, cells, nr_cells,
sizeof(struct cell), 0, e);
/* Append hierarchical tasks to each cell. */
threadpool_map(&e->threadpool, engine_make_hierarchical_tasks_mapper, cells,
nr_cells, sizeof(struct cell), 0, e);
/* Run through the tasks and make force tasks for each density task.
Each force task depends on the cell ghosts and unlocks the kick task
of its super-cell. */
threadpool_map(&e->threadpool, engine_make_extra_hydroloop_tasks_mapper,
sched->tasks, sched->nr_tasks, sizeof(struct task), 0, e);
/* Add the dependencies for the gravity stuff */
if (e->policy & (engine_policy_self_gravity | engine_policy_external_gravity))
engine_link_gravity_tasks(e);
#ifdef WITH_MPI
/* Add the communication tasks if MPI is being used. */
if (e->policy & engine_policy_mpi) {
/* Loop over the proxies. */
for (int pid = 0; pid < e->nr_proxies; pid++) {
/* Get a handle on the proxy. */
struct proxy *p = &e->proxies[pid];
for (int k = 0; k < p->nr_cells_in; k++)
engine_addtasks_recv_timestep(e, p->cells_in[k], NULL);
for (int k = 0; k < p->nr_cells_out; k++)
engine_addtasks_send_timestep(e, p->cells_out[k], p->cells_in[0], NULL);
/* Loop through the proxy's incoming cells and add the
recv tasks for the cells in the proxy that have a hydro connection. */
if (e->policy & engine_policy_hydro)
for (int k = 0; k < p->nr_cells_in; k++)
if (p->cells_in_type[k] & proxy_cell_type_hydro)
engine_addtasks_recv_hydro(e, p->cells_in[k], NULL, NULL, NULL);
/* Loop through the proxy's incoming cells and add the
recv tasks for the cells in the proxy that have a gravity connection.
*/
if (e->policy & engine_policy_self_gravity)
for (int k = 0; k < p->nr_cells_in; k++)
if (p->cells_in_type[k] & proxy_cell_type_gravity)
engine_addtasks_recv_gravity(e, p->cells_in[k], NULL);
/* Loop through the proxy's outgoing cells and add the
send tasks for the cells in the proxy that have a hydro connection. */
if (e->policy & engine_policy_hydro)
for (int k = 0; k < p->nr_cells_out; k++)
if (p->cells_out_type[k] & proxy_cell_type_hydro)
engine_addtasks_send_hydro(e, p->cells_out[k], p->cells_in[0], NULL,
NULL, NULL);
/* Loop through the proxy's outgoing cells and add the
send tasks for the cells in the proxy that have a gravity connection.
*/
if (e->policy & engine_policy_self_gravity)
for (int k = 0; k < p->nr_cells_out; k++)
if (p->cells_out_type[k] & proxy_cell_type_gravity)
engine_addtasks_send_gravity(e, p->cells_out[k], p->cells_in[0],
NULL);
}
}
#endif
/* Set the unlocks per task. */
scheduler_set_unlocks(sched);
/* Rank the tasks. */
scheduler_ranktasks(sched);
/* Weight the tasks. */
scheduler_reweight(sched, e->verbose);
/* Set the tasks age. */
e->tasks_age = 0;
if (e->verbose)
message("took %.3f %s (including reweight).",
clocks_from_ticks(getticks() - tic), clocks_getunit());
}
/** * @brief Mark tasks to be un-skipped and set the sort flags accordingly.
* Threadpool mapper function.
*
* @param map_data pointer to the tasks
* @param num_elements number of tasks
* @param extra_data pointer to int that will define if a rebuild is needed.
*/
void engine_marktasks_mapper(void *map_data, int num_elements,
void *extra_data) {
/* Unpack the arguments. */
struct task *tasks = (struct task *)map_data;
size_t *rebuild_space = &((size_t *)extra_data)[1];
struct scheduler *s = (struct scheduler *)(((size_t *)extra_data)[2]);
struct engine *e = (struct engine *)((size_t *)extra_data)[0];
for (int ind = 0; ind < num_elements; ind++) {
struct task *t = &tasks[ind];
/* Single-cell task? */
if (t->type == task_type_self || t->type == task_type_sub_self) {
/* Local pointer. */
struct cell *ci = t->ci;
if (ci->nodeID != engine_rank) error("Non-local self task found");
/* Activate the hydro drift */
if (t->type == task_type_self && t->subtype == task_subtype_density) {
if (cell_is_active_hydro(ci, e)) {
scheduler_activate(s, t);
cell_activate_drift_part(ci, s);
}
}
/* Store current values of dx_max and h_max. */
else if (t->type == task_type_sub_self &&
t->subtype == task_subtype_density) {
if (cell_is_active_hydro(ci, e)) {
scheduler_activate(s, t);
cell_activate_subcell_hydro_tasks(ci, NULL, s);
}
}
else if (t->type == task_type_self && t->subtype == task_subtype_force) {
if (cell_is_active_hydro(ci, e)) scheduler_activate(s, t);
}
else if (t->type == task_type_sub_self &&
t->subtype == task_subtype_force) {
if (cell_is_active_hydro(ci, e)) scheduler_activate(s, t);
}
#ifdef EXTRA_HYDRO_LOOP
else if (t->type == task_type_self &&
t->subtype == task_subtype_gradient) {
if (cell_is_active_hydro(ci, e)) scheduler_activate(s, t);
}
else if (t->type == task_type_sub_self &&
t->subtype == task_subtype_gradient) {
if (cell_is_active_hydro(ci, e)) scheduler_activate(s, t);
}
#endif
/* Activate the gravity drift */
else if (t->type == task_type_self && t->subtype == task_subtype_grav) {
if (cell_is_active_gravity(ci, e)) {
scheduler_activate(s, t);
cell_activate_subcell_grav_tasks(t->ci, NULL, s);
} }
/* Activate the gravity drift */
else if (t->type == task_type_self &&
t->subtype == task_subtype_external_grav) {
if (cell_is_active_gravity(ci, e)) {
scheduler_activate(s, t);
cell_activate_drift_gpart(t->ci, s);
}
}
#ifdef SWIFT_DEBUG_CHECKS
else {
error("Invalid task type / sub-type encountered");
}
#endif
}
/* Pair? */
else if (t->type == task_type_pair || t->type == task_type_sub_pair) {
/* Local pointers. */
struct cell *ci = t->ci;
struct cell *cj = t->cj;
const int ci_active_hydro = cell_is_active_hydro(ci, e);
const int cj_active_hydro = cell_is_active_hydro(cj, e);
const int ci_active_gravity = cell_is_active_gravity(ci, e);
const int cj_active_gravity = cell_is_active_gravity(cj, e);
/* Only activate tasks that involve a local active cell. */
if ((t->subtype == task_subtype_density ||
t->subtype == task_subtype_gradient ||
t->subtype == task_subtype_force) &&
((ci_active_hydro && ci->nodeID == engine_rank) ||
(cj_active_hydro && cj->nodeID == engine_rank))) {
scheduler_activate(s, t);
/* Set the correct sorting flags */
if (t->type == task_type_pair && t->subtype == task_subtype_density) {
/* Store some values. */
atomic_or(&ci->requires_sorts, 1 << t->flags);
atomic_or(&cj->requires_sorts, 1 << t->flags);
ci->dx_max_sort_old = ci->dx_max_sort;
cj->dx_max_sort_old = cj->dx_max_sort;
/* Activate the hydro drift tasks. */
if (ci->nodeID == engine_rank) cell_activate_drift_part(ci, s);
if (cj->nodeID == engine_rank) cell_activate_drift_part(cj, s);
/* Check the sorts and activate them if needed. */
cell_activate_sorts(ci, t->flags, s);
cell_activate_sorts(cj, t->flags, s);
}
/* Store current values of dx_max and h_max. */
else if (t->type == task_type_sub_pair &&
t->subtype == task_subtype_density) {
cell_activate_subcell_hydro_tasks(t->ci, t->cj, s);
}
}
if ((t->subtype == task_subtype_grav) &&
((ci_active_gravity && ci->nodeID == engine_rank) ||
(cj_active_gravity && cj->nodeID == engine_rank))) {
scheduler_activate(s, t);
if (t->type == task_type_pair && t->subtype == task_subtype_grav) {
/* Activate the gravity drift */
cell_activate_subcell_grav_tasks(t->ci, t->cj, s);
}
else if (t->type == task_type_sub_pair &&
t->subtype == task_subtype_grav) {
error("Invalid task sub-type encountered");
}
}
/* Only interested in density tasks as of here. */
if (t->subtype == task_subtype_density) {
/* Too much particle movement? */
if (cell_need_rebuild_for_pair(ci, cj)) *rebuild_space = 1;
#ifdef WITH_MPI
/* Activate the send/recv tasks. */
if (ci->nodeID != engine_rank) {
/* If the local cell is active, receive data from the foreign cell. */
if (cj_active_hydro) {
scheduler_activate(s, ci->recv_xv);
if (ci_active_hydro) {
scheduler_activate(s, ci->recv_rho);
#ifdef EXTRA_HYDRO_LOOP
scheduler_activate(s, ci->recv_gradient);
#endif
}
}
/* If the foreign cell is active, we want its ti_end values. */
if (ci_active_hydro) scheduler_activate(s, ci->recv_ti);
/* Is the foreign cell active and will need stuff from us? */
if (ci_active_hydro) {
struct link *l =
scheduler_activate_send(s, cj->send_xv, ci->nodeID);
/* Drift the cell which will be sent at the level at which it is
sent, i.e. drift the cell specified in the send task (l->t)
itself. */
cell_activate_drift_part(l->t->ci, s);
/* If the local cell is also active, more stuff will be needed. */
if (cj_active_hydro) {
scheduler_activate_send(s, cj->send_rho, ci->nodeID);
#ifdef EXTRA_HYDRO_LOOP
scheduler_activate_send(s, cj->send_gradient, ci->nodeID);
#endif
}
}
/* If the local cell is active, send its ti_end values. */
if (cj_active_hydro)
scheduler_activate_send(s, cj->send_ti, ci->nodeID);
} else if (cj->nodeID != engine_rank) {
/* If the local cell is active, receive data from the foreign cell. */
if (ci_active_hydro) {
scheduler_activate(s, cj->recv_xv);
if (cj_active_hydro) {
scheduler_activate(s, cj->recv_rho);
#ifdef EXTRA_HYDRO_LOOP
scheduler_activate(s, cj->recv_gradient);
#endif }
}
/* If the foreign cell is active, we want its ti_end values. */
if (cj_active_hydro) scheduler_activate(s, cj->recv_ti);
/* Is the foreign cell active and will need stuff from us? */
if (cj_active_hydro) {
struct link *l =
scheduler_activate_send(s, ci->send_xv, cj->nodeID);
/* Drift the cell which will be sent at the level at which it is
sent, i.e. drift the cell specified in the send task (l->t)
itself. */
cell_activate_drift_part(l->t->ci, s);
/* If the local cell is also active, more stuff will be needed. */
if (ci_active_hydro) {
scheduler_activate_send(s, ci->send_rho, cj->nodeID);
#ifdef EXTRA_HYDRO_LOOP
scheduler_activate_send(s, ci->send_gradient, cj->nodeID);
#endif
}
}
/* If the local cell is active, send its ti_end values. */
if (ci_active_hydro)
scheduler_activate_send(s, ci->send_ti, cj->nodeID);
}
#endif
}
/* Only interested in gravity tasks as of here. */
if (t->subtype == task_subtype_grav) {
#ifdef WITH_MPI
/* Activate the send/recv tasks. */
if (ci->nodeID != engine_rank) {
/* If the local cell is active, receive data from the foreign cell. */
if (cj_active_gravity) {
scheduler_activate(s, ci->recv_grav);
}
/* If the foreign cell is active, we want its ti_end values. */
if (ci_active_gravity) scheduler_activate(s, ci->recv_ti);
/* Is the foreign cell active and will need stuff from us? */
if (ci_active_gravity) {
struct link *l =
scheduler_activate_send(s, cj->send_grav, ci->nodeID);
/* Drift the cell which will be sent at the level at which it is
sent, i.e. drift the cell specified in the send task (l->t)
itself. */
cell_activate_drift_gpart(l->t->ci, s);
}
/* If the local cell is active, send its ti_end values. */
if (cj_active_gravity)
scheduler_activate_send(s, cj->send_ti, ci->nodeID);
} else if (cj->nodeID != engine_rank) {
/* If the local cell is active, receive data from the foreign cell. */
if (ci_active_gravity) { scheduler_activate(s, cj->recv_grav);
}
/* If the foreign cell is active, we want its ti_end values. */
if (cj_active_gravity) scheduler_activate(s, cj->recv_ti);
/* Is the foreign cell active and will need stuff from us? */
if (cj_active_gravity) {
struct link *l =
scheduler_activate_send(s, ci->send_grav, cj->nodeID);
/* Drift the cell which will be sent at the level at which it is
sent, i.e. drift the cell specified in the send task (l->t)
itself. */
cell_activate_drift_gpart(l->t->ci, s);
}
/* If the local cell is active, send its ti_end values. */
if (ci_active_gravity)
scheduler_activate_send(s, ci->send_ti, cj->nodeID);
}
#endif
}
}
/* End force ? */
else if (t->type == task_type_end_force) {
if (cell_is_active_hydro(t->ci, e) || cell_is_active_gravity(t->ci, e))
scheduler_activate(s, t);
}
/* Kick ? */
else if (t->type == task_type_kick1 || t->type == task_type_kick2) {
if (cell_is_active_hydro(t->ci, e) || cell_is_active_gravity(t->ci, e))
scheduler_activate(s, t);
}
/* Hydro ghost tasks ? */
else if (t->type == task_type_ghost || t->type == task_type_extra_ghost ||
t->type == task_type_ghost_in || t->type == task_type_ghost_out) {
if (cell_is_active_hydro(t->ci, e)) scheduler_activate(s, t);
}
/* Gravity stuff ? */
else if (t->type == task_type_grav_down || t->type == task_type_grav_mesh ||
t->type == task_type_grav_long_range ||
t->type == task_type_init_grav) {
if (cell_is_active_gravity(t->ci, e)) scheduler_activate(s, t);
}
/* Time-step? */
else if (t->type == task_type_timestep) {
t->ci->updated = 0;
t->ci->g_updated = 0;
t->ci->s_updated = 0;
if (cell_is_active_hydro(t->ci, e) || cell_is_active_gravity(t->ci, e))
scheduler_activate(s, t);
}
/* Subgrid tasks */
else if (t->type == task_type_cooling || t->type == task_type_sourceterms) {
if (cell_is_active_hydro(t->ci, e)) scheduler_activate(s, t);
}
}
}
/** * @brief Mark tasks to be un-skipped and set the sort flags accordingly.
*
* @return 1 if the space has to be rebuilt, 0 otherwise.
*/
int engine_marktasks(struct engine *e) {
struct scheduler *s = &e->sched;
const ticks tic = getticks();
int rebuild_space = 0;
/* Run through the tasks and mark as skip or not. */
size_t extra_data[3] = {(size_t)e, (size_t)rebuild_space, (size_t)&e->sched};
threadpool_map(&e->threadpool, engine_marktasks_mapper, s->tasks, s->nr_tasks,
sizeof(struct task), 0, extra_data);
rebuild_space = extra_data[1];
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
/* All is well... */
return rebuild_space;
}
/**
* @brief Prints the number of tasks in the engine
*
* @param e The #engine.
*/
void engine_print_task_counts(struct engine *e) {
const ticks tic = getticks();
struct scheduler *const sched = &e->sched;
const int nr_tasks = sched->nr_tasks;
const struct task *const tasks = sched->tasks;
/* Count and print the number of each task type. */
int counts[task_type_count + 1];
for (int k = 0; k <= task_type_count; k++) counts[k] = 0;
for (int k = 0; k < nr_tasks; k++) {
if (tasks[k].skip)
counts[task_type_count] += 1;
else
counts[(int)tasks[k].type] += 1;
}
message("Total = %d (per cell = %d)", nr_tasks,
(int)ceil((double)nr_tasks / e->s->tot_cells));
#ifdef WITH_MPI
printf("[%04i] %s engine_print_task_counts: task counts are [ %s=%i",
e->nodeID, clocks_get_timesincestart(), taskID_names[0], counts[0]);
#else
printf("%s engine_print_task_counts: task counts are [ %s=%i",
clocks_get_timesincestart(), taskID_names[0], counts[0]);
#endif
for (int k = 1; k < task_type_count; k++)
printf(" %s=%i", taskID_names[k], counts[k]);
printf(" skipped=%i ]\n", counts[task_type_count]);
fflush(stdout);
message("nr_parts = %zu.", e->s->nr_parts);
message("nr_gparts = %zu.", e->s->nr_gparts);
message("nr_sparts = %zu.", e->s->nr_sparts);
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief if necessary, estimate the number of tasks required given
* the current tasks in use and the numbers of cells. *
* If e->tasks_per_cell is set greater than 0 then that value is used
* as the estimate of the average number of tasks per cell,
* otherwise we attempt an estimate.
*
* @param e the #engine
*
* @return the estimated total number of tasks
*/
int engine_estimate_nr_tasks(struct engine *e) {
int tasks_per_cell = e->tasks_per_cell;
if (tasks_per_cell > 0) return e->s->tot_cells * tasks_per_cell;
/* Our guess differs depending on the types of tasks we are using, but we
* basically use a formula <n1>*ntopcells + <n2>*(totcells - ntopcells).
* Where <n1> is the expected maximum tasks per top-level/super cell, and
* <n2> the expected maximum tasks for all other cells. These should give
* a safe upper limit.
*/
int n1 = 0;
int n2 = 0;
if (e->policy & engine_policy_hydro) {
n1 += 37;
n2 += 2;
#ifdef WITH_MPI
n1 += 6;
#endif
#ifdef EXTRA_HYDRO_LOOP
n1 += 15;
#ifdef WITH_MPI
n1 += 2;
#endif
#endif
}
if (e->policy & engine_policy_self_gravity) {
n1 += 125;
n2 += 8;
#ifdef WITH_MPI
n2 += 2;
#endif
}
if (e->policy & engine_policy_external_gravity) {
n1 += 2;
}
if (e->policy & engine_policy_cosmology) {
n1 += 2;
}
if (e->policy & engine_policy_cooling) {
n1 += 2;
}
if (e->policy & engine_policy_sourceterms) {
n1 += 2;
}
if (e->policy & engine_policy_stars) {
n1 += 2;
}
#ifdef WITH_MPI
/* We need fewer tasks per rank when using MPI, but we could have
* imbalances, so we need to work using the locally active cells, not just
* some equipartition amongst the nodes. Don't want to recurse the whole
* cell tree, so just make a guess of the maximum possible total cells. */
int ntop = 0;
int ncells = 0;
for (int k = 0; k < e->s->nr_cells; k++) {
struct cell *c = &e->s->cells_top[k];
/* Any cells with particles will have tasks (local & foreign). */
int nparts = c->count + c->gcount + c->scount;
if (nparts > 0) {
ntop++;
ncells++;
/* Count cell depth until we get below the parts per cell threshold. */
int depth = 0;
while (nparts > space_splitsize) {
depth++;
nparts /= 8;
ncells += (1 << (depth * 3));
}
}
}
/* If no local cells, we are probably still initialising, so just keep
* room for the top-level. */
if (ncells == 0) {
ntop = e->s->nr_cells;
ncells = ntop;
}
#else
int ntop = e->s->nr_cells;
int ncells = e->s->tot_cells;
#endif
double ntasks = n1 * ntop + n2 * (ncells - ntop);
if (ncells > 0) tasks_per_cell = ceil(ntasks / ncells);
if (tasks_per_cell < 1.0) tasks_per_cell = 1.0;
if (e->verbose)
message("tasks per cell estimated as: %d, maximum tasks: %d",
tasks_per_cell, ncells * tasks_per_cell);
return ncells * tasks_per_cell;
}
/**
* @brief Rebuild the space and tasks.
*
* @param e The #engine.
* @param clean_smoothing_length_values Are we cleaning up the values of
* the smoothing lengths before building the tasks ?
*/
void engine_rebuild(struct engine *e, int clean_smoothing_length_values) {
const ticks tic = getticks();
/* Clear the forcerebuild flag, whatever it was. */
e->forcerebuild = 0;
/* Re-build the space. */
space_rebuild(e->s, e->verbose);
/* Re-compute the mesh forces */
if ((e->policy & engine_policy_self_gravity) && e->s->periodic)
pm_mesh_compute_potential(e->mesh, e);
/* Re-compute the maximal RMS displacement constraint */
if (e->policy & engine_policy_cosmology)
engine_recompute_displacement_constraint(e);
#ifdef SWIFT_DEBUG_CHECKS
part_verify_links(e->s->parts, e->s->gparts, e->s->sparts, e->s->nr_parts,
e->s->nr_gparts, e->s->nr_sparts, e->verbose);
#endif
/* Initial cleaning up session ? */
if (clean_smoothing_length_values) space_sanitize(e->s);
/* If in parallel, exchange the cell structure, top-level and neighbouring
* multipoles. */
#ifdef WITH_MPI
engine_exchange_cells(e);
if (e->policy & engine_policy_self_gravity) engine_exchange_top_multipoles(e);
if (e->policy & engine_policy_self_gravity)
engine_exchange_proxy_multipoles(e);
#endif
/* Re-build the tasks. */
engine_maketasks(e);
/* Make the list of top-level cells that have tasks */
space_list_cells_with_tasks(e->s);
#ifdef SWIFT_DEBUG_CHECKS
/* Check that all cells have been drifted to the current time.
* That can include cells that have not
* previously been active on this rank. */
space_check_drift_point(e->s, e->ti_old,
e->policy & engine_policy_self_gravity);
#endif
/* Run through the tasks and mark as skip or not. */
if (engine_marktasks(e))
error("engine_marktasks failed after space_rebuild.");
/* Print the status of the system */
if (e->verbose) engine_print_task_counts(e);
/* Clear the counters of updates since the last rebuild */
e->updates_since_rebuild = 0;
e->g_updates_since_rebuild = 0;
e->s_updates_since_rebuild = 0;
/* Flag that a rebuild has taken place */
e->step_props |= engine_step_prop_rebuild;
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief Prepare the #engine by re-building the cells and tasks.
*
* @param e The #engine to prepare.
*/
void engine_prepare(struct engine *e) {
TIMER_TIC2;
const ticks tic = getticks();
#ifdef SWIFT_DEBUG_CHECKS
if (e->forcerepart || e->forcerebuild) {
/* Check that all cells have been drifted to the current time.
* That can include cells that have not previously been active on this
* rank. Skip if haven't got any cells (yet). */
if (e->s->cells_top != NULL)
space_check_drift_point(e->s, e->ti_old,
e->policy & engine_policy_self_gravity);
}
#endif
/* Do we need repartitioning ? */
if (e->forcerepart) engine_repartition(e);
/* Do we need rebuilding ? */
if (e->forcerebuild) engine_rebuild(e, 0);
/* Unskip active tasks and check for rebuild */
engine_unskip(e);
/* Re-rank the tasks every now and then. XXX this never executes. */
if (e->tasks_age % engine_tasksreweight == 1) {
scheduler_reweight(&e->sched, e->verbose);
}
e->tasks_age += 1;
TIMER_TOC2(timer_prepare);
if (e->verbose)
message("took %.3f %s (including unskip and reweight).",
clocks_from_ticks(getticks() - tic), clocks_getunit());
}
/**
* @brief Implements a barrier for the #runner threads.
*
* @param e The #engine.
*/
void engine_barrier(struct engine *e) {
/* Wait at the wait barrier. */
swift_barrier_wait(&e->wait_barrier);
/* Wait at the run barrier. */
swift_barrier_wait(&e->run_barrier);
}
/**
* @brief Mapping function to collect the data from the kick.
*
* @param c A super-cell.
*/
void engine_collect_end_of_step_recurse(struct cell *c) {
/* Skip super-cells (Their values are already set) */
#ifdef WITH_MPI
if (c->timestep != NULL || c->recv_ti != NULL) return;
#else
if (c->timestep != NULL) return;
#endif /* WITH_MPI */
/* Counters for the different quantities. */
int updated = 0, g_updated = 0, s_updated = 0;
integertime_t ti_hydro_end_min = max_nr_timesteps, ti_hydro_end_max = 0,
ti_hydro_beg_max = 0;
integertime_t ti_gravity_end_min = max_nr_timesteps, ti_gravity_end_max = 0,
ti_gravity_beg_max = 0;
/* Collect the values from the progeny. */
for (int k = 0; k < 8; k++) {
struct cell *cp = c->progeny[k];
if (cp != NULL && (cp->count > 0 || cp->gcount > 0 || cp->scount > 0)) {
/* Recurse */
engine_collect_end_of_step_recurse(cp);
/* And update */
ti_hydro_end_min = min(ti_hydro_end_min, cp->ti_hydro_end_min);
ti_hydro_end_max = max(ti_hydro_end_max, cp->ti_hydro_end_max);
ti_hydro_beg_max = max(ti_hydro_beg_max, cp->ti_hydro_beg_max);
ti_gravity_end_min = min(ti_gravity_end_min, cp->ti_gravity_end_min);
ti_gravity_end_max = max(ti_gravity_end_max, cp->ti_gravity_end_max);
ti_gravity_beg_max = max(ti_gravity_beg_max, cp->ti_gravity_beg_max);
updated += cp->updated; g_updated += cp->g_updated;
s_updated += cp->s_updated;
/* Collected, so clear for next time. */
cp->updated = 0;
cp->g_updated = 0;
cp->s_updated = 0;
}
}
/* Store the collected values in the cell. */
c->ti_hydro_end_min = ti_hydro_end_min;
c->ti_hydro_end_max = ti_hydro_end_max;
c->ti_hydro_beg_max = ti_hydro_beg_max;
c->ti_gravity_end_min = ti_gravity_end_min;
c->ti_gravity_end_max = ti_gravity_end_max;
c->ti_gravity_beg_max = ti_gravity_beg_max;
c->updated = updated;
c->g_updated = g_updated;
c->s_updated = s_updated;
}
void engine_collect_end_of_step_mapper(void *map_data, int num_elements,
void *extra_data) {
struct end_of_step_data *data = (struct end_of_step_data *)extra_data;
struct engine *e = data->e;
struct space *s = e->s;
int *local_cells = (int *)map_data;
/* Local collectible */
int updates = 0, g_updates = 0, s_updates = 0;
integertime_t ti_hydro_end_min = max_nr_timesteps, ti_hydro_end_max = 0,
ti_hydro_beg_max = 0;
integertime_t ti_gravity_end_min = max_nr_timesteps, ti_gravity_end_max = 0,
ti_gravity_beg_max = 0;
for (int ind = 0; ind < num_elements; ind++) {
struct cell *c = &s->cells_top[local_cells[ind]];
if (c->count > 0 || c->gcount > 0 || c->scount > 0) {
/* Make the top-cells recurse */
engine_collect_end_of_step_recurse(c);
/* And aggregate */
ti_hydro_end_min = min(ti_hydro_end_min, c->ti_hydro_end_min);
ti_hydro_end_max = max(ti_hydro_end_max, c->ti_hydro_end_max);
ti_hydro_beg_max = max(ti_hydro_beg_max, c->ti_hydro_beg_max);
ti_gravity_end_min = min(ti_gravity_end_min, c->ti_gravity_end_min);
ti_gravity_end_max = max(ti_gravity_end_max, c->ti_gravity_end_max);
ti_gravity_beg_max = max(ti_gravity_beg_max, c->ti_gravity_beg_max);
updates += c->updated;
g_updates += c->g_updated;
s_updates += c->s_updated;
/* Collected, so clear for next time. */
c->updated = 0;
c->g_updated = 0;
c->s_updated = 0;
}
}
/* Let's write back to the global data.
* We use the space lock to garanty single access*/
if (lock_lock(&s->lock) == 0) {
data->updates += updates;
data->g_updates += g_updates;
data->s_updates += s_updates;
data->ti_hydro_end_min = min(ti_hydro_end_min, data->ti_hydro_end_min); data->ti_hydro_end_max = max(ti_hydro_end_max, data->ti_hydro_end_max);
data->ti_hydro_beg_max = max(ti_hydro_beg_max, data->ti_hydro_beg_max);
data->ti_gravity_end_min =
min(ti_gravity_end_min, data->ti_gravity_end_min);
data->ti_gravity_end_max =
max(ti_gravity_end_max, data->ti_gravity_end_max);
data->ti_gravity_beg_max =
max(ti_gravity_beg_max, data->ti_gravity_beg_max);
}
if (lock_unlock(&s->lock) != 0) error("Failed to unlock the space");
}
/**
* @brief Collects the next time-step and rebuild flag.
*
* The next time-step is determined by making each super-cell recurse to
* collect the minimal of ti_end and the number of updated particles. When in
* MPI mode this routines reduces these across all nodes and also collects the
* forcerebuild flag -- this is so that we only use a single collective MPI
* call per step for all these values.
*
* Note that the results are stored in e->collect_group1 struct not in the
* engine fields, unless apply is true. These can be applied field-by-field
* or all at once using collectgroup1_copy();
*
* @param e The #engine.
* @param apply whether to apply the results to the engine or just keep in the
* group1 struct.
*/
void engine_collect_end_of_step(struct engine *e, int apply) {
const ticks tic = getticks();
const struct space *s = e->s;
struct end_of_step_data data;
data.updates = 0, data.g_updates = 0, data.s_updates = 0;
data.ti_hydro_end_min = max_nr_timesteps, data.ti_hydro_end_max = 0,
data.ti_hydro_beg_max = 0;
data.ti_gravity_end_min = max_nr_timesteps, data.ti_gravity_end_max = 0,
data.ti_gravity_beg_max = 0;
data.e = e;
/* Collect information from the local top-level cells */
threadpool_map(&e->threadpool, engine_collect_end_of_step_mapper,
s->local_cells_top, s->nr_local_cells, sizeof(int), 0, &data);
/* Store these in the temporary collection group. */
collectgroup1_init(&e->collect_group1, data.updates, data.g_updates,
data.s_updates, data.ti_hydro_end_min,
data.ti_hydro_end_max, data.ti_hydro_beg_max,
data.ti_gravity_end_min, data.ti_gravity_end_max,
data.ti_gravity_beg_max, e->forcerebuild);
/* Aggregate collective data from the different nodes for this step. */
#ifdef WITH_MPI
collectgroup1_reduce(&e->collect_group1);
#ifdef SWIFT_DEBUG_CHECKS
{
/* Check the above using the original MPI calls. */
integertime_t in_i[2], out_i[2];
in_i[0] = 0;
in_i[1] = 0;
out_i[0] = data.ti_hydro_end_min;
out_i[1] = data.ti_gravity_end_min;
if (MPI_Allreduce(out_i, in_i, 2, MPI_LONG_LONG_INT, MPI_MIN,
MPI_COMM_WORLD) != MPI_SUCCESS)
error("Failed to aggregate ti_end_min.");
if (in_i[0] != (long long)e->collect_group1.ti_hydro_end_min)
error("Failed to get same ti_hydro_end_min, is %lld, should be %lld",
in_i[0], e->collect_group1.ti_hydro_end_min); if (in_i[1] != (long long)e->collect_group1.ti_gravity_end_min)
error("Failed to get same ti_gravity_end_min, is %lld, should be %lld",
in_i[1], e->collect_group1.ti_gravity_end_min);
long long in_ll[3], out_ll[3];
out_ll[0] = data.updates;
out_ll[1] = data.g_updates;
out_ll[2] = data.s_updates;
if (MPI_Allreduce(out_ll, in_ll, 3, MPI_LONG_LONG_INT, MPI_SUM,
MPI_COMM_WORLD) != MPI_SUCCESS)
error("Failed to aggregate particle counts.");
if (in_ll[0] != (long long)e->collect_group1.updates)
error("Failed to get same updates, is %lld, should be %lld", in_ll[0],
e->collect_group1.updates);
if (in_ll[1] != (long long)e->collect_group1.g_updates)
error("Failed to get same g_updates, is %lld, should be %lld", in_ll[1],
e->collect_group1.g_updates);
if (in_ll[2] != (long long)e->collect_group1.s_updates)
error("Failed to get same s_updates, is %lld, should be %lld", in_ll[2],
e->collect_group1.s_updates);
int buff = 0;
if (MPI_Allreduce(&e->forcerebuild, &buff, 1, MPI_INT, MPI_MAX,
MPI_COMM_WORLD) != MPI_SUCCESS)
error("Failed to aggregate the rebuild flag across nodes.");
if (!!buff != !!e->collect_group1.forcerebuild)
error(
"Failed to get same rebuild flag from all nodes, is %d,"
"should be %d",
buff, e->collect_group1.forcerebuild);
}
#endif
#endif
/* Apply to the engine, if requested. */
if (apply) collectgroup1_apply(&e->collect_group1, e);
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief Print the conserved quantities statistics to a log file
*
* @param e The #engine.
*/
void engine_print_stats(struct engine *e) {
const ticks tic = getticks();
#ifdef SWIFT_DEBUG_CHECKS
/* Check that all cells have been drifted to the current time.
* That can include cells that have not
* previously been active on this rank. */
space_check_drift_point(e->s, e->ti_current,
e->policy & engine_policy_self_gravity);
/* Be verbose about this */
if (e->nodeID == 0) {
if (e->policy & engine_policy_cosmology)
message("Saving statistics at a=%e",
exp(e->ti_current * e->time_base) * e->cosmology->a_begin);
else
message("Saving statistics at t=%e",
e->ti_current * e->time_base + e->time_begin);
}
#else
if (e->verbose) {
if (e->policy & engine_policy_cosmology) message("Saving statistics at a=%e",
exp(e->ti_current * e->time_base) * e->cosmology->a_begin);
else
message("Saving statistics at t=%e",
e->ti_current * e->time_base + e->time_begin);
}
#endif
e->save_stats = 0;
struct statistics stats;
stats_init(&stats);
/* Collect the stats on this node */
stats_collect(e->s, &stats);
/* Aggregate the data from the different nodes. */
#ifdef WITH_MPI
struct statistics global_stats;
stats_init(&global_stats);
if (MPI_Reduce(&stats, &global_stats, 1, statistics_mpi_type,
statistics_mpi_reduce_op, 0, MPI_COMM_WORLD) != MPI_SUCCESS)
error("Failed to aggregate stats.");
#else
struct statistics global_stats = stats;
#endif
/* Finalize operations */
stats_finalize(&stats);
/* Print info */
if (e->nodeID == 0)
stats_print_to_file(e->file_stats, &global_stats, e->time);
/* Flag that we dumped some statistics */
e->step_props |= engine_step_prop_statistics;
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief Sets all the force, drift and kick tasks to be skipped.
*
* @param e The #engine to act on.
*/
void engine_skip_force_and_kick(struct engine *e) {
struct task *tasks = e->sched.tasks;
const int nr_tasks = e->sched.nr_tasks;
for (int i = 0; i < nr_tasks; ++i) {
struct task *t = &tasks[i];
/* Skip everything that updates the particles */
if (t->type == task_type_drift_part || t->type == task_type_drift_gpart ||
t->type == task_type_kick1 || t->type == task_type_kick2 ||
t->type == task_type_timestep || t->subtype == task_subtype_force ||
t->subtype == task_subtype_grav || t->type == task_type_end_force ||
t->type == task_type_grav_long_range || t->type == task_type_grav_mm ||
t->type == task_type_grav_down || t->type == task_type_cooling ||
t->type == task_type_sourceterms)
t->skip = 1;
}
/* Run through the cells and clear some flags. */
space_map_cells_pre(e->s, 1, cell_clear_drift_flags, NULL);}
/**
* @brief Sets all the drift and first kick tasks to be skipped.
*
* @param e The #engine to act on.
*/
void engine_skip_drift(struct engine *e) {
struct task *tasks = e->sched.tasks;
const int nr_tasks = e->sched.nr_tasks;
for (int i = 0; i < nr_tasks; ++i) {
struct task *t = &tasks[i];
/* Skip everything that moves the particles */
if (t->type == task_type_drift_part || t->type == task_type_drift_gpart)
t->skip = 1;
}
/* Run through the cells and clear some flags. */
space_map_cells_pre(e->s, 1, cell_clear_drift_flags, NULL);
}
/**
* @brief Launch the runners.
*
* @param e The #engine.
*/
void engine_launch(struct engine *e) {
const ticks tic = getticks();
#ifdef SWIFT_DEBUG_CHECKS
/* Re-set all the cell task counters to 0 */
space_reset_task_counters(e->s);
#endif
/* Prepare the scheduler. */
atomic_inc(&e->sched.waiting);
/* Cry havoc and let loose the dogs of war. */
swift_barrier_wait(&e->run_barrier);
/* Load the tasks. */
scheduler_start(&e->sched);
/* Remove the safeguard. */
pthread_mutex_lock(&e->sched.sleep_mutex);
atomic_dec(&e->sched.waiting);
pthread_cond_broadcast(&e->sched.sleep_cond);
pthread_mutex_unlock(&e->sched.sleep_mutex);
/* Sit back and wait for the runners to come home. */
swift_barrier_wait(&e->wait_barrier);
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief Calls the 'first init' function on the particles of all types.
*
* @param e The #engine.
*/
void engine_first_init_particles(struct engine *e) {
const ticks tic = getticks();
/* Set the particles in a state where they are ready for a run. */
space_first_init_parts(e->s, e->verbose);
space_first_init_gparts(e->s, e->verbose);
space_first_init_sparts(e->s, e->verbose);
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief Initialises the particles and set them in a state ready to move
*forward in time.
*
* @param e The #engine
* @param flag_entropy_ICs Did the 'Internal Energy' of the particles actually
* contain entropy ?
* @param clean_h_values Are we cleaning up the values of h before building
* the tasks ?
*/
void engine_init_particles(struct engine *e, int flag_entropy_ICs,
int clean_h_values) {
struct space *s = e->s;
struct clocks_time time1, time2;
clocks_gettime(&time1);
/* Start by setting the particles in a good state */
if (e->nodeID == 0) message("Setting particles to a valid state...");
engine_first_init_particles(e);
if (e->nodeID == 0) message("Computing initial gas densities.");
/* Construct all cells and tasks to start everything */
engine_rebuild(e, clean_h_values);
/* No time integration. We just want the density and ghosts */
engine_skip_force_and_kick(e);
/* Print the number of active tasks ? */
if (e->verbose) engine_print_task_counts(e);
/* Init the particle data (by hand). */
space_init_parts(s, e->verbose);
space_init_gparts(s, e->verbose);
/* Now, launch the calculation */
TIMER_TIC;
engine_launch(e);
TIMER_TOC(timer_runners);
/* Apply some conversions (e.g. internal energy -> entropy) */
if (!flag_entropy_ICs) {
if (e->nodeID == 0) message("Converting internal energy variable.");
space_convert_quantities(e->s, e->verbose);
/* Correct what we did (e.g. in PE-SPH, need to recompute rho_bar) */
if (hydro_need_extra_init_loop) {
engine_marktasks(e);
engine_skip_force_and_kick(e);
engine_launch(e);
}
}
#ifdef SWIFT_DEBUG_CHECKS
/* Check that we have the correct total mass in the top-level multipoles */ long long num_gpart_mpole = 0;
if (e->policy & engine_policy_self_gravity) {
for (int i = 0; i < e->s->nr_cells; ++i)
num_gpart_mpole += e->s->cells_top[i].multipole->m_pole.num_gpart;
if (num_gpart_mpole != e->total_nr_gparts)
error(
"Top-level multipoles don't contain the total number of gpart "
"s->nr_gpart=%lld, "
"m_poles=%lld",
e->total_nr_gparts, num_gpart_mpole);
}
#endif
/* Now time to get ready for the first time-step */
if (e->nodeID == 0) message("Running initial fake time-step.");
/* Prepare all the tasks again for a new round */
engine_marktasks(e);
/* No drift this time */
engine_skip_drift(e);
/* Init the particle data (by hand). */
space_init_parts(e->s, e->verbose);
space_init_gparts(e->s, e->verbose);
/* Print the number of active tasks ? */
if (e->verbose) engine_print_task_counts(e);
#ifdef SWIFT_GRAVITY_FORCE_CHECKS
/* Run the brute-force gravity calculation for some gparts */
if (e->policy & engine_policy_self_gravity)
gravity_exact_force_compute(e->s, e);
#endif
if (e->nodeID == 0) scheduler_write_dependencies(&e->sched, e->verbose);
/* Run the 0th time-step */
TIMER_TIC2;
engine_launch(e);
TIMER_TOC2(timer_runners);
#ifdef SWIFT_GRAVITY_FORCE_CHECKS
/* Check the accuracy of the gravity calculation */
if (e->policy & engine_policy_self_gravity)
gravity_exact_force_check(e->s, e, 1e-1);
#endif
/* Recover the (integer) end of the next time-step */
engine_collect_end_of_step(e, 1);
/* Check if any particles have the same position. This is not
* allowed (/0) so we abort.*/
if (s->nr_parts > 0) {
/* Sorting should put the same positions next to each other... */
int failed = 0;
double *prev_x = s->parts[0].x;
long long *prev_id = &s->parts[0].id;
for (size_t k = 1; k < s->nr_parts; k++) {
if (prev_x[0] == s->parts[k].x[0] && prev_x[1] == s->parts[k].x[1] &&
prev_x[2] == s->parts[k].x[2]) {
if (e->verbose)
message("Two particles occupy location: %f %f %f id=%lld id=%lld",
prev_x[0], prev_x[1], prev_x[2], *prev_id, s->parts[k].id);
failed++;
}
prev_x = s->parts[k].x;
prev_id = &s->parts[k].id;
} if (failed > 0)
error(
"Have %d particle pairs with the same locations.\n"
"Cannot continue",
failed);
}
/* Also check any gparts. This is not supposed to be fatal so only warn. */
if (s->nr_gparts > 0) {
int failed = 0;
double *prev_x = s->gparts[0].x;
for (size_t k = 1; k < s->nr_gparts; k++) {
if (prev_x[0] == s->gparts[k].x[0] && prev_x[1] == s->gparts[k].x[1] &&
prev_x[2] == s->gparts[k].x[2]) {
if (e->verbose)
message("Two gparts occupy location: %f %f %f / %f %f %f", prev_x[0],
prev_x[1], prev_x[2], s->gparts[k].x[0], s->gparts[k].x[1],
s->gparts[k].x[2]);
failed++;
}
prev_x = s->gparts[k].x;
}
if (failed > 0)
message(
"WARNING: found %d gpart pairs at the same location. "
"That is not optimal",
failed);
}
/* Check the top-level cell h_max matches the particles as these can be
* updated in the the ghost tasks (only a problem if the ICs estimates for h
* are too small). Note this must be followed by a rebuild as sub-cells will
* not be updated until that is done. */
if (s->cells_top != NULL && s->nr_parts > 0) {
for (int i = 0; i < s->nr_cells; i++) {
struct cell *c = &s->cells_top[i];
if (c->nodeID == engine_rank && c->count > 0) {
float part_h_max = c->parts[0].h;
for (int k = 1; k < c->count; k++) {
if (c->parts[k].h > part_h_max) part_h_max = c->parts[k].h;
}
c->h_max = max(part_h_max, c->h_max);
}
}
}
clocks_gettime(&time2);
#ifdef SWIFT_DEBUG_CHECKS
space_check_timesteps(e->s);
part_verify_links(e->s->parts, e->s->gparts, e->s->sparts, e->s->nr_parts,
e->s->nr_gparts, e->s->nr_sparts, e->verbose);
#endif
/* Ready to go */
e->step = 0;
e->forcerebuild = 1;
e->wallclock_time = (float)clocks_diff(&time1, &time2);
if (e->verbose) message("took %.3f %s.", e->wallclock_time, clocks_getunit());
}
/**
* @brief Let the #engine loose to compute the forces.
*
* @param e The #engine.
*/
void engine_step(struct engine *e) {
TIMER_TIC2;
struct clocks_time time1, time2;
clocks_gettime(&time1);
#ifdef SWIFT_DEBUG_TASKS
e->tic_step = getticks();
#endif
if (e->nodeID == 0) {
/* Print some information to the screen */
printf(
" %6d %14e %14e %10.5f %14e %4d %4d %12lld %12lld %12lld %21.3f %6d\n",
e->step, e->time, e->cosmology->a, e->cosmology->z, e->time_step,
e->min_active_bin, e->max_active_bin, e->updates, e->g_updates,
e->s_updates, e->wallclock_time, e->step_props);
fflush(stdout);
fprintf(e->file_timesteps,
" %6d %14e %14e %14e %4d %4d %12lld %12lld %12lld %21.3f %6d\n",
e->step, e->time, e->cosmology->a, e->time_step, e->min_active_bin,
e->max_active_bin, e->updates, e->g_updates, e->s_updates,
e->wallclock_time, e->step_props);
fflush(e->file_timesteps);
}
/* Move forward in time */
e->ti_old = e->ti_current;
e->ti_current = e->ti_end_min;
e->max_active_bin = get_max_active_bin(e->ti_end_min);
e->min_active_bin = get_min_active_bin(e->ti_current, e->ti_old);
e->step += 1;
e->step_props = engine_step_prop_none;
if (e->policy & engine_policy_cosmology) {
e->time_old = e->time;
cosmology_update(e->cosmology, e->physical_constants, e->ti_current);
e->time = e->cosmology->time;
e->time_step = e->time - e->time_old;
} else {
e->time = e->ti_current * e->time_base + e->time_begin;
e->time_old = e->ti_old * e->time_base + e->time_begin;
e->time_step = (e->ti_current - e->ti_old) * e->time_base;
}
/* Update the softening lengths */
if (e->policy & engine_policy_self_gravity)
gravity_update(e->gravity_properties, e->cosmology);
/* Prepare the tasks to be launched, rebuild or repartition if needed. */
engine_prepare(e);
#ifdef WITH_MPI
/* Repartition the space amongst the nodes? */
engine_repartition_trigger(e);
#endif
/* Are we drifting everything (a la Gadget/GIZMO) ? */
if (e->policy & engine_policy_drift_all) engine_drift_all(e);
/* Are we reconstructing the multipoles or drifting them ?*/
if (e->policy & engine_policy_self_gravity) {
if (e->policy & engine_policy_reconstruct_mpoles)
engine_reconstruct_multipoles(e);
else
engine_drift_top_multipoles(e);
}
/* Print the number of active tasks ? */ if (e->verbose) engine_print_task_counts(e);
/* Dump local cells and active particle counts. */
/* dumpCells("cells", 0, 0, 0, 0, e->s, e->nodeID, e->step); */
#ifdef SWIFT_DEBUG_CHECKS
/* Check that we have the correct total mass in the top-level multipoles */
long long num_gpart_mpole = 0;
if (e->policy & engine_policy_self_gravity) {
for (int i = 0; i < e->s->nr_cells; ++i)
num_gpart_mpole += e->s->cells_top[i].multipole->m_pole.num_gpart;
if (num_gpart_mpole != e->total_nr_gparts)
error(
"Multipoles don't contain the total number of gpart mpoles=%lld "
"ngparts=%lld",
num_gpart_mpole, e->total_nr_gparts);
}
#endif
#ifdef SWIFT_GRAVITY_FORCE_CHECKS
/* Run the brute-force gravity calculation for some gparts */
if (e->policy & engine_policy_self_gravity)
gravity_exact_force_compute(e->s, e);
#endif
/* Start all the tasks. */
TIMER_TIC;
engine_launch(e);
TIMER_TOC(timer_runners);
#ifdef SWIFT_GRAVITY_FORCE_CHECKS
/* Check the accuracy of the gravity calculation */
if (e->policy & engine_policy_self_gravity)
gravity_exact_force_check(e->s, e, 1e-1);
#endif
/* Collect the values of rebuild from all nodes and recover the (integer)
* end of the next time-step. Do these together to reduce the collective MPI
* calls per step, but some of the gathered information is not applied just
* yet (in case we save a snapshot or drift). */
engine_collect_end_of_step(e, 0);
e->forcerebuild = e->collect_group1.forcerebuild;
/* Update the counters */
e->updates_since_rebuild += e->collect_group1.updates;
e->g_updates_since_rebuild += e->collect_group1.g_updates;
e->s_updates_since_rebuild += e->collect_group1.s_updates;
/* Trigger a tree-rebuild if we passed the frequency threshold */
if ((e->policy & engine_policy_self_gravity) &&
((double)e->g_updates_since_rebuild >
((double)e->total_nr_gparts) * e->gravity_properties->rebuild_frequency))
e->forcerebuild = 1;
/* Save some statistics ? */
if (e->ti_end_min >= e->ti_next_stats && e->ti_next_stats > 0)
e->save_stats = 1;
/* Do we want a snapshot? */
if (e->ti_end_min >= e->ti_next_snapshot && e->ti_next_snapshot > 0)
e->dump_snapshot = 1;
/* Drift everybody (i.e. what has not yet been drifted) */
/* to the current time */
int drifted_all =
(e->dump_snapshot || e->forcerebuild || e->forcerepart || e->save_stats);
if (drifted_all) engine_drift_all(e);
/* Write a snapshot ? */
if (e->dump_snapshot) {
/* Dump... */
engine_dump_snapshot(e);
/* ... and find the next output time */
engine_compute_next_snapshot_time(e);
}
/* Save some statistics */
if (e->save_stats) {
/* Dump */
engine_print_stats(e);
/* and move on */
engine_compute_next_statistics_time(e);
}
/* Now apply all the collected time step updates and particle counts. */
collectgroup1_apply(&e->collect_group1, e);
TIMER_TOC2(timer_step);
clocks_gettime(&time2);
e->wallclock_time = (float)clocks_diff(&time1, &time2);
#ifdef SWIFT_DEBUG_TASKS
/* Time in ticks at the end of this step. */
e->toc_step = getticks();
#endif
/* Final job is to create a restart file if needed. */
engine_dump_restarts(e, drifted_all, e->restart_onexit && engine_is_done(e));
}
/**
* @brief dump restart files if it is time to do so and dumps are enabled.
*
* @param e the engine.
* @param drifted_all true if a drift_all has just been performed.
* @param force force a dump, if dumping is enabled.
*/
void engine_dump_restarts(struct engine *e, int drifted_all, int force) {
if (e->restart_dump) {
ticks tic = getticks();
/* Dump when the time has arrived, or we are told to. */
int dump = ((tic > e->restart_next) || force);
#ifdef WITH_MPI
/* Synchronize this action from rank 0 (ticks may differ between
* machines). */
MPI_Bcast(&dump, 1, MPI_INT, 0, MPI_COMM_WORLD);
#endif
if (dump) {
/* Clean out the previous saved files, if found. Do this now as we are
* MPI synchronized. */
restart_remove_previous(e->restart_file);
/* Drift all particles first (may have just been done). */
if (!drifted_all) engine_drift_all(e);
restart_write(e, e->restart_file);
if (e->verbose)
message("Dumping restart files took %.3f %s",
clocks_from_ticks(getticks() - tic), clocks_getunit());
/* Time after which next dump will occur. */
e->restart_next += e->restart_dt;
/* Flag that we dumped the restarts */
e->step_props |= engine_step_prop_restarts;
}
}
}
/**
* @brief Returns 1 if the simulation has reached its end point, 0 otherwise
*/
int engine_is_done(struct engine *e) {
return !(e->ti_current < max_nr_timesteps);
}
/**
* @brief Unskip all the tasks that act on active cells at this time.
*
* @param e The #engine.
*/
void engine_unskip(struct engine *e) {
const ticks tic = getticks();
struct space *s = e->s;
#ifdef WITH_PROFILER
static int count = 0;
char filename[100];
sprintf(filename, "/tmp/swift_runner_do_usnkip_mapper_%06i.prof", count++);
ProfilerStart(filename);
#endif // WITH_PROFILER
/* Move the active local cells to the top of the list. */
int *local_cells = e->s->local_cells_top;
int num_active_cells = 0;
for (int k = 0; k < s->nr_local_cells; k++) {
struct cell *c = &s->cells_top[local_cells[k]];
if ((e->policy & engine_policy_hydro && cell_is_active_hydro(c, e)) ||
(e->policy &
(engine_policy_self_gravity | engine_policy_external_gravity) &&
cell_is_active_gravity(c, e))) {
if (num_active_cells != k)
memswap(&local_cells[k], &local_cells[num_active_cells], sizeof(int));
num_active_cells += 1;
}
}
/* Activate all the regular tasks */
threadpool_map(&e->threadpool, runner_do_unskip_mapper, local_cells,
num_active_cells, sizeof(int), 1, e);
#ifdef WITH_PROFILER
ProfilerStop();
#endif // WITH_PROFILER
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief Mapper function to drift *all* particle types and multipoles forward
* in time.
*
* @param map_data An array of #cell%s.
* @param num_elements Chunk size.
* @param extra_data Pointer to an #engine.
*/
void engine_do_drift_all_mapper(void *map_data, int num_elements,
void *extra_data) {
struct engine *e = (struct engine *)extra_data;
struct cell *cells = (struct cell *)map_data;
for (int ind = 0; ind < num_elements; ind++) {
struct cell *c = &cells[ind];
if (c != NULL && c->nodeID == e->nodeID) {
/* Drift all the particles */
cell_drift_part(c, e, 1);
/* Drift all the g-particles */
cell_drift_gpart(c, e, 1);
}
/* Drift the multipoles */
if (e->policy & engine_policy_self_gravity) {
cell_drift_all_multipoles(c, e);
}
}
}
/**
* @brief Drift *all* particles and multipoles at all levels
* forward to the current time.
*
* @param e The #engine.
*/
void engine_drift_all(struct engine *e) {
const ticks tic = getticks();
#ifdef SWIFT_DEBUG_CHECKS
if (e->nodeID == 0) {
if (e->policy & engine_policy_cosmology)
message("Drifting all to a=%e",
exp(e->ti_current * e->time_base) * e->cosmology->a_begin);
else
message("Drifting all to t=%e",
e->ti_current * e->time_base + e->time_begin);
}
#endif
threadpool_map(&e->threadpool, engine_do_drift_all_mapper, e->s->cells_top,
e->s->nr_cells, sizeof(struct cell), 0, e);
/* Synchronize particle positions */
space_synchronize_particle_positions(e->s);
#ifdef SWIFT_DEBUG_CHECKS
/* Check that all cells have been drifted to the current time. */
space_check_drift_point(e->s, e->ti_current,
e->policy & engine_policy_self_gravity);
part_verify_links(e->s->parts, e->s->gparts, e->s->sparts, e->s->nr_parts,
e->s->nr_gparts, e->s->nr_sparts, e->verbose);
#endif
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief Mapper function to drift *all* top-level multipoles forward in
* time.
*
* @param map_data An array of #cell%s.
* @param num_elements Chunk size.
* @param extra_data Pointer to an #engine.
*/
void engine_do_drift_top_multipoles_mapper(void *map_data, int num_elements,
void *extra_data) {
struct engine *e = (struct engine *)extra_data;
struct cell *cells = (struct cell *)map_data;
for (int ind = 0; ind < num_elements; ind++) {
struct cell *c = &cells[ind];
if (c != NULL) {
/* Drift the multipole at this level only */
if (c->ti_old_multipole != e->ti_current) cell_drift_multipole(c, e);
}
}
}
/**
* @brief Drift *all* top-level multipoles forward to the current time.
*
* @param e The #engine.
*/
void engine_drift_top_multipoles(struct engine *e) {
const ticks tic = getticks();
threadpool_map(&e->threadpool, engine_do_drift_top_multipoles_mapper,
e->s->cells_top, e->s->nr_cells, sizeof(struct cell), 0, e);
#ifdef SWIFT_DEBUG_CHECKS
/* Check that all cells have been drifted to the current time. */
space_check_top_multipoles_drift_point(e->s, e->ti_current);
#endif
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
void engine_do_reconstruct_multipoles_mapper(void *map_data, int num_elements,
void *extra_data) {
struct engine *e = (struct engine *)extra_data;
struct cell *cells = (struct cell *)map_data;
for (int ind = 0; ind < num_elements; ind++) {
struct cell *c = &cells[ind];
if (c != NULL && c->nodeID == e->nodeID) {
/* Construct the multipoles in this cell hierarchy */
cell_make_multipoles(c, e->ti_current);
}
}
}
/**
* @brief Reconstruct all the multipoles at all the levels in the tree.
*
* @param e The #engine.
*/
void engine_reconstruct_multipoles(struct engine *e) {
const ticks tic = getticks();
#ifdef SWIFT_DEBUG_CHECKS
if (e->nodeID == 0) {
if (e->policy & engine_policy_cosmology)
message("Reconstructing multipoles at a=%e",
exp(e->ti_current * e->time_base) * e->cosmology->a_begin);
else
message("Reconstructing multipoles at t=%e",
e->ti_current * e->time_base + e->time_begin);
}#endif
threadpool_map(&e->threadpool, engine_do_reconstruct_multipoles_mapper,
e->s->cells_top, e->s->nr_cells, sizeof(struct cell), 0, e);
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
}
/**
* @brief Create and fill the proxies.
*
* @param e The #engine.
*/
void engine_makeproxies(struct engine *e) {
#ifdef WITH_MPI
const int nodeID = e->nodeID;
const struct space *s = e->s;
const int *cdim = s->cdim;
const int periodic = s->periodic;
/* Get some info about the physics */
const double *dim = s->dim;
const struct gravity_props *props = e->gravity_properties;
const double theta_crit2 = props->theta_crit2;
const int with_hydro = (e->policy & engine_policy_hydro);
const int with_gravity = (e->policy & engine_policy_self_gravity);
/* Handle on the cells and proxies */
struct cell *cells = s->cells_top;
struct proxy *proxies = e->proxies;
/* Let's time this */
const ticks tic = getticks();
/* Prepare the proxies and the proxy index. */
if (e->proxy_ind == NULL)
if ((e->proxy_ind = (int *)malloc(sizeof(int) * e->nr_nodes)) == NULL)
error("Failed to allocate proxy index.");
for (int k = 0; k < e->nr_nodes; k++) e->proxy_ind[k] = -1;
e->nr_proxies = 0;
/* Compute how many cells away we need to walk */
int delta = 1; /*hydro case */
if (with_gravity) {
const double distance = 2.5 * cells[0].width[0] / props->theta_crit;
delta = (int)(distance / cells[0].width[0]) + 1;
// MATTHIEU: Check this calculation
}
/* Let's be verbose about this choice */
if (e->verbose)
message("Looking for proxies up to %d top-level cells away", delta);
/* Loop over each cell in the space. */
int ind[3];
for (ind[0] = 0; ind[0] < cdim[0]; ind[0]++) {
for (ind[1] = 0; ind[1] < cdim[1]; ind[1]++) {
for (ind[2] = 0; ind[2] < cdim[2]; ind[2]++) {
/* Get the cell ID. */
const int cid = cell_getid(cdim, ind[0], ind[1], ind[2]);
double CoM_i[3] = {0., 0., 0.};
double r_max_i = 0.;
if (with_gravity) {
/* Get ci's multipole */
const struct gravity_tensors *multi_i = cells[cid].multipole;
CoM_i[0] = multi_i->CoM[0];
CoM_i[1] = multi_i->CoM[1];
CoM_i[2] = multi_i->CoM[2];
r_max_i = multi_i->r_max;
}
/* Loop over all its neighbours (periodic). */
for (int i = -delta; i <= delta; i++) {
int ii = ind[0] + i;
if (ii >= cdim[0])
ii -= cdim[0];
else if (ii < 0)
ii += cdim[0];
for (int j = -delta; j <= delta; j++) {
int jj = ind[1] + j;
if (jj >= cdim[1])
jj -= cdim[1];
else if (jj < 0)
jj += cdim[1];
for (int k = -delta; k <= delta; k++) {
int kk = ind[2] + k;
if (kk >= cdim[2])
kk -= cdim[2];
else if (kk < 0)
kk += cdim[2];
/* Get the cell ID. */
const int cjd = cell_getid(cdim, ii, jj, kk);
/* Early abort (same cell) */
if (cid == cjd) continue;
/* Early abort (both same node) */
if (cells[cid].nodeID == nodeID && cells[cjd].nodeID == nodeID)
continue;
/* Early abort (both foreign node) */
if (cells[cid].nodeID != nodeID && cells[cjd].nodeID != nodeID)
continue;
int proxy_type = 0;
/* In the hydro case, only care about neighbours */
if (with_hydro) {
/* This is super-ugly but checks for direct neighbours */
/* with periodic BC */
if (((abs(ind[0] - ii) <= 1 ||
abs(ind[0] - ii - cdim[0]) <= 1 ||
abs(ind[0] - ii + cdim[0]) <= 1) &&
(abs(ind[1] - jj) <= 1 ||
abs(ind[1] - jj - cdim[1]) <= 1 ||
abs(ind[1] - jj + cdim[1]) <= 1) &&
(abs(ind[2] - kk) <= 1 ||
abs(ind[2] - kk - cdim[2]) <= 1 ||
abs(ind[2] - kk + cdim[2]) <= 1)))
proxy_type |= (int)proxy_cell_type_hydro;
}
/* In the gravity case, check distances using the MAC. */
if (with_gravity) {
/* Get cj's multipole */
const struct gravity_tensors *multi_j = cells[cjd].multipole;
const double CoM_j[3] = {multi_j->CoM[0], multi_j->CoM[1],
multi_j->CoM[2]};
const double r_max_j = multi_j->r_max;
/* Let's compute the current distance between the cell pair*/
double dx = CoM_i[0] - CoM_j[0];
double dy = CoM_i[1] - CoM_j[1];
double dz = CoM_i[2] - CoM_j[2];
/* Apply BC */
if (periodic) {
dx = nearest(dx, dim[0]);
dy = nearest(dy, dim[1]);
dz = nearest(dz, dim[2]);
}
const double r2 = dx * dx + dy * dy + dz * dz;
/* Are we too close for M2L? */
if (!gravity_M2L_accept(r_max_i, r_max_j, theta_crit2, r2))
proxy_type |= (int)proxy_cell_type_gravity;
}
/* Abort if not in range at all */
if (proxy_type == proxy_cell_type_none) continue;
/* Add to proxies? */
if (cells[cid].nodeID == nodeID && cells[cjd].nodeID != nodeID) {
/* Do we already have a relationship with this node? */
int pid = e->proxy_ind[cells[cjd].nodeID];
if (pid < 0) {
if (e->nr_proxies == engine_maxproxies)
error("Maximum number of proxies exceeded.");
/* Ok, start a new proxy for this pair of nodes */
proxy_init(&proxies[e->nr_proxies], e->nodeID,
cells[cjd].nodeID);
/* Store the information */
e->proxy_ind[cells[cjd].nodeID] = e->nr_proxies;
pid = e->nr_proxies;
e->nr_proxies += 1;
}
/* Add the cell to the proxy */
proxy_addcell_in(&proxies[pid], &cells[cjd], proxy_type);
proxy_addcell_out(&proxies[pid], &cells[cid], proxy_type);
/* Store info about where to send the cell */
cells[cid].sendto |= (1ULL << pid);
}
/* Same for the symmetric case? */
if (cells[cjd].nodeID == nodeID && cells[cid].nodeID != nodeID) {
/* Do we already have a relationship with this node? */
int pid = e->proxy_ind[cells[cid].nodeID];
if (pid < 0) {
if (e->nr_proxies == engine_maxproxies)
error("Maximum number of proxies exceeded.");
/* Ok, start a new proxy for this pair of nodes */
proxy_init(&proxies[e->nr_proxies], e->nodeID,
cells[cid].nodeID);
/* Store the information */
e->proxy_ind[cells[cid].nodeID] = e->nr_proxies;
pid = e->nr_proxies;
e->nr_proxies += 1;
}
/* Add the cell to the proxy */
proxy_addcell_in(&proxies[pid], &cells[cid], proxy_type); proxy_addcell_out(&proxies[pid], &cells[cjd], proxy_type);
/* Store info about where to send the cell */
cells[cjd].sendto |= (1ULL << pid);
}
}
}
}
}
}
}
/* Be clear about the time */
if (e->verbose)
message("took %.3f %s.", clocks_from_ticks(getticks() - tic),
clocks_getunit());
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Split the underlying space into regions and assign to separate nodes.
*
* @param e The #engine.
* @param initial_partition structure defining the cell partition technique
*/
void engine_split(struct engine *e, struct partition *initial_partition) {
#ifdef WITH_MPI
struct space *s = e->s;
/* Do the initial partition of the cells. */
partition_initial_partition(initial_partition, e->nodeID, e->nr_nodes, s);
/* Make the proxies. */
engine_makeproxies(e);
/* Re-allocate the local parts. */
if (e->verbose)
message("Re-allocating parts array from %zu to %zu.", s->size_parts,
(size_t)(s->nr_parts * 1.2));
s->size_parts = s->nr_parts * 1.2;
struct part *parts_new = NULL;
struct xpart *xparts_new = NULL;
if (posix_memalign((void **)&parts_new, part_align,
sizeof(struct part) * s->size_parts) != 0 ||
posix_memalign((void **)&xparts_new, xpart_align,
sizeof(struct xpart) * s->size_parts) != 0)
error("Failed to allocate new part data.");
if (s->nr_parts > 0) {
memcpy(parts_new, s->parts, sizeof(struct part) * s->nr_parts);
memcpy(xparts_new, s->xparts, sizeof(struct xpart) * s->nr_parts);
}
free(s->parts);
free(s->xparts);
s->parts = parts_new;
s->xparts = xparts_new;
/* Re-link the gparts to their parts. */
if (s->nr_parts > 0 && s->nr_gparts > 0)
part_relink_gparts_to_parts(s->parts, s->nr_parts, 0);
/* Re-allocate the local sparts. */
if (e->verbose)
message("Re-allocating sparts array from %zu to %zu.", s->size_sparts,
(size_t)(s->nr_sparts * 1.2));
s->size_sparts = s->nr_sparts * 1.2;
struct spart *sparts_new = NULL;
if (posix_memalign((void **)&sparts_new, spart_align, sizeof(struct spart) * s->size_sparts) != 0)
error("Failed to allocate new spart data.");
if (s->nr_sparts > 0)
memcpy(sparts_new, s->sparts, sizeof(struct spart) * s->nr_sparts);
free(s->sparts);
s->sparts = sparts_new;
/* Re-link the gparts to their sparts. */
if (s->nr_sparts > 0 && s->nr_gparts > 0)
part_relink_gparts_to_sparts(s->sparts, s->nr_sparts, 0);
/* Re-allocate the local gparts. */
if (e->verbose)
message("Re-allocating gparts array from %zu to %zu.", s->size_gparts,
(size_t)(s->nr_gparts * 1.2));
s->size_gparts = s->nr_gparts * 1.2;
struct gpart *gparts_new = NULL;
if (posix_memalign((void **)&gparts_new, gpart_align,
sizeof(struct gpart) * s->size_gparts) != 0)
error("Failed to allocate new gpart data.");
if (s->nr_gparts > 0)
memcpy(gparts_new, s->gparts, sizeof(struct gpart) * s->nr_gparts);
free(s->gparts);
s->gparts = gparts_new;
/* Re-link the parts. */
if (s->nr_parts > 0 && s->nr_gparts > 0)
part_relink_parts_to_gparts(s->gparts, s->nr_gparts, s->parts);
/* Re-link the sparts. */
if (s->nr_sparts > 0 && s->nr_gparts > 0)
part_relink_sparts_to_gparts(s->gparts, s->nr_gparts, s->sparts);
#ifdef SWIFT_DEBUG_CHECKS
/* Verify that the links are correct */
part_verify_links(s->parts, s->gparts, s->sparts, s->nr_parts, s->nr_gparts,
s->nr_sparts, e->verbose);
#endif
#else
error("SWIFT was not compiled with MPI support.");
#endif
}
/**
* @brief Writes a snapshot with the current state of the engine
*
* @param e The #engine.
*/
void engine_dump_snapshot(struct engine *e) {
struct clocks_time time1, time2;
clocks_gettime(&time1);
#ifdef SWIFT_DEBUG_CHECKS
/* Check that all cells have been drifted to the current time.
* That can include cells that have not
* previously been active on this rank. */
space_check_drift_point(e->s, e->ti_current,
e->policy & engine_policy_self_gravity);
/* Be verbose about this */
if (e->nodeID == 0) {
if (e->policy & engine_policy_cosmology)
message("Dumping snapshot at a=%e",
exp(e->ti_current * e->time_base) * e->cosmology->a_begin);
else
message("Dumping snapshot at t=%e",
e->ti_current * e->time_base + e->time_begin); }
#else
if (e->verbose) {
if (e->policy & engine_policy_cosmology)
message("Dumping snapshot at a=%e",
exp(e->ti_current * e->time_base) * e->cosmology->a_begin);
else
message("Dumping snapshot at t=%e",
e->ti_current * e->time_base + e->time_begin);
}
#endif
/* Dump... */
#if defined(HAVE_HDF5)
#if defined(WITH_MPI)
#if defined(HAVE_PARALLEL_HDF5)
write_output_parallel(e, e->snapshot_base_name, e->internal_units,
e->snapshot_units, e->nodeID, e->nr_nodes,
MPI_COMM_WORLD, MPI_INFO_NULL);
#else
write_output_serial(e, e->snapshot_base_name, e->internal_units,
e->snapshot_units, e->nodeID, e->nr_nodes, MPI_COMM_WORLD,
MPI_INFO_NULL);
#endif
#else
write_output_single(e, e->snapshot_base_name, e->internal_units,
e->snapshot_units);
#endif
#endif
e->dump_snapshot = 0;
/* Flag that we dumped a snapshot */
e->step_props |= engine_step_prop_snapshot;
clocks_gettime(&time2);
if (e->verbose)
message("writing particle properties took %.3f %s.",
(float)clocks_diff(&time1, &time2), clocks_getunit());
}
#ifdef HAVE_SETAFFINITY
/**
* @brief Returns the initial affinity the main thread is using.
*/
static cpu_set_t *engine_entry_affinity(void) {
static int use_entry_affinity = 0;
static cpu_set_t entry_affinity;
if (!use_entry_affinity) {
pthread_t engine = pthread_self();
pthread_getaffinity_np(engine, sizeof(entry_affinity), &entry_affinity);
use_entry_affinity = 1;
}
return &entry_affinity;
}
#endif
/**
* @brief Ensure the NUMA node on which we initialise (first touch) everything
* doesn't change before engine_init allocates NUMA-local workers.
*/
void engine_pin(void) {
#ifdef HAVE_SETAFFINITY
cpu_set_t *entry_affinity = engine_entry_affinity();
int pin;
for (pin = 0; pin < CPU_SETSIZE && !CPU_ISSET(pin, entry_affinity); ++pin) ;
cpu_set_t affinity;
CPU_ZERO(&affinity);
CPU_SET(pin, &affinity);
if (sched_setaffinity(0, sizeof(affinity), &affinity) != 0) {
error("failed to set engine's affinity");
}
#else
error("SWIFT was not compiled with support for pinning.");
#endif
}
/**
* @brief Unpins the main thread.
*/
void engine_unpin(void) {
#ifdef HAVE_SETAFFINITY
pthread_t main_thread = pthread_self();
cpu_set_t *entry_affinity = engine_entry_affinity();
pthread_setaffinity_np(main_thread, sizeof(*entry_affinity), entry_affinity);
#else
error("SWIFT was not compiled with support for pinning.");
#endif
}
/**
* @brief init an engine struct with the necessary properties for the
* simulation.
*
* Note do not use when restarting. Engine initialisation
* is completed by a call to engine_config().
*
* @param e The #engine.
* @param s The #space in which this #runner will run.
* @param params The parsed parameter file.
* @param Ngas total number of gas particles in the simulation.
* @param Ngparts total number of gravity particles in the simulation.
* @param Nstars total number of star particles in the simulation.
* @param policy The queuing policy to use.
* @param verbose Is this #engine talkative ?
* @param reparttype What type of repartition algorithm are we using ?
* @param internal_units The system of units used internally.
* @param physical_constants The #phys_const used for this run.
* @param cosmo The #cosmology used for this run.
* @param hydro The #hydro_props used for this run.
* @param gravity The #gravity_props used for this run.
* @param mesh The #pm_mesh used for the long-range periodic forces.
* @param potential The properties of the external potential.
* @param cooling_func The properties of the cooling function.
* @param chemistry The chemistry information.
* @param sourceterms The properties of the source terms function.
*/
void engine_init(struct engine *e, struct space *s, struct swift_params *params,
long long Ngas, long long Ngparts, long long Nstars,
int policy, int verbose, struct repartition *reparttype,
const struct unit_system *internal_units,
const struct phys_const *physical_constants,
struct cosmology *cosmo, const struct hydro_props *hydro,
struct gravity_props *gravity, struct pm_mesh *mesh,
const struct external_potential *potential,
const struct cooling_function_data *cooling_func,
const struct chemistry_global_data *chemistry,
struct sourceterms *sourceterms) {
/* Clean-up everything */
bzero(e, sizeof(struct engine));
/* Store the all values in the fields of the engine. */
e->s = s; e->policy = policy;
e->step = 0;
e->total_nr_parts = Ngas;
e->total_nr_gparts = Ngparts;
e->total_nr_sparts = Nstars;
e->proxy_ind = NULL;
e->nr_proxies = 0;
e->reparttype = reparttype;
e->ti_old = 0;
e->ti_current = 0;
e->time_step = 0.;
e->time_base = 0.;
e->time_base_inv = 0.;
e->time_begin = 0.;
e->time_end = 0.;
e->max_active_bin = num_time_bins;
e->min_active_bin = 1;
e->internal_units = internal_units;
e->a_first_snapshot =
parser_get_opt_param_double(params, "Snapshots:scale_factor_first", 0.1);
e->time_first_snapshot =
parser_get_opt_param_double(params, "Snapshots:time_first", 0.);
e->delta_time_snapshot =
parser_get_param_double(params, "Snapshots:delta_time");
e->ti_next_snapshot = 0;
parser_get_param_string(params, "Snapshots:basename", e->snapshot_base_name);
e->snapshot_compression =
parser_get_opt_param_int(params, "Snapshots:compression", 0);
e->snapshot_label_delta =
parser_get_opt_param_int(params, "Snapshots:label_delta", 1);
e->snapshot_units = (struct unit_system *)malloc(sizeof(struct unit_system));
units_init_default(e->snapshot_units, params, "Snapshots", internal_units);
e->snapshot_output_count = 0;
e->dt_min = parser_get_param_double(params, "TimeIntegration:dt_min");
e->dt_max = parser_get_param_double(params, "TimeIntegration:dt_max");
e->dt_max_RMS_displacement = FLT_MAX;
e->max_RMS_displacement_factor = parser_get_opt_param_double(
params, "TimeIntegration:max_dt_RMS_factor", 0.25);
e->a_first_statistics =
parser_get_opt_param_double(params, "Statistics:scale_factor_first", 0.1);
e->time_first_statistics =
parser_get_opt_param_double(params, "Statistics:time_first", 0.);
e->delta_time_statistics =
parser_get_param_double(params, "Statistics:delta_time");
e->ti_next_stats = 0;
e->verbose = verbose;
e->wallclock_time = 0.f;
e->physical_constants = physical_constants;
e->cosmology = cosmo;
e->hydro_properties = hydro;
e->gravity_properties = gravity;
e->mesh = mesh;
e->external_potential = potential;
e->cooling_func = cooling_func;
e->chemistry = chemistry;
e->sourceterms = sourceterms;
e->parameter_file = params;
#ifdef WITH_MPI
e->cputime_last_step = 0;
e->last_repartition = 0;
#endif
/* Make the space link back to the engine. */
s->e = e;
/* Setup the timestep if non-cosmological */
if (!(e->policy & engine_policy_cosmology)) {
e->time_begin =
parser_get_param_double(params, "TimeIntegration:time_begin");
e->time_end = parser_get_param_double(params, "TimeIntegration:time_end"); e->time_old = e->time_begin;
e->time = e->time_begin;
e->time_base = (e->time_end - e->time_begin) / max_nr_timesteps;
e->time_base_inv = 1.0 / e->time_base;
e->ti_current = 0;
} else {
e->time_begin = e->cosmology->time_begin;
e->time_end = e->cosmology->time_end;
e->time_old = e->time_begin;
e->time = e->time_begin;
/* Copy the relevent information from the cosmology model */
e->time_base = e->cosmology->time_base;
e->time_base_inv = e->cosmology->time_base_inv;
e->ti_current = 0;
}
}
/**
* @brief configure an engine with the given number of threads, queues
* and core affinity. Also initialises the scheduler and opens various
* output files, computes the next timestep and initialises the
* threadpool.
*
* Assumes the engine is correctly initialised i.e. is restored from a restart
* file or has been setup by engine_init(). When restarting any output log
* files are positioned so that further output is appended. Note that
* parameters are not read from the engine, just the parameter file, this
* allows values derived in this function to be changed between runs.
* When not restarting params should be the same as given to engine_init().
*
* @param restart true when restarting the application.
* @param e The #engine.
* @param params The parsed parameter file.
* @param nr_nodes The number of MPI ranks.
* @param nodeID The MPI rank of this node.
* @param nr_threads The number of threads per MPI rank.
* @param with_aff use processor affinity, if supported.
* @param verbose Is this #engine talkative ?
* @param restart_file The name of our restart file.
*/
void engine_config(int restart, struct engine *e, struct swift_params *params,
int nr_nodes, int nodeID, int nr_threads, int with_aff,
int verbose, const char *restart_file) {
/* Store the values and initialise global fields. */
e->nodeID = nodeID;
e->nr_threads = nr_threads;
e->nr_nodes = nr_nodes;
e->proxy_ind = NULL;
e->nr_proxies = 0;
e->forcerebuild = 1;
e->forcerepart = 0;
e->dump_snapshot = 0;
e->save_stats = 0;
e->step_props = engine_step_prop_none;
e->links = NULL;
e->nr_links = 0;
e->file_stats = NULL;
e->file_timesteps = NULL;
e->verbose = verbose;
e->wallclock_time = 0.f;
e->restart_dump = 0;
e->restart_file = restart_file;
e->restart_next = 0;
e->restart_dt = 0;
engine_rank = nodeID;
/* Get the number of queues */
int nr_queues =
parser_get_opt_param_int(params, "Scheduler:nr_queues", nr_threads);
if (nr_queues <= 0) nr_queues = e->nr_threads;
if (nr_queues != nr_threads)
message("Number of task queues set to %d", nr_queues);
e->s->nr_queues = nr_queues;
/* Deal with affinity. For now, just figure out the number of cores. */
#if defined(HAVE_SETAFFINITY)
const int nr_cores = sysconf(_SC_NPROCESSORS_ONLN);
cpu_set_t *entry_affinity = engine_entry_affinity();
const int nr_affinity_cores = CPU_COUNT(entry_affinity);
if (nr_cores > CPU_SETSIZE) /* Unlikely, except on e.g. SGI UV. */
error("must allocate dynamic cpu_set_t (too many cores per node)");
char *buf = (char *)malloc((nr_cores + 1) * sizeof(char));
buf[nr_cores] = '\0';
for (int j = 0; j < nr_cores; ++j) {
/* Reversed bit order from convention, but same as e.g. Intel MPI's
* I_MPI_PIN_DOMAIN explicit mask: left-to-right, LSB-to-MSB. */
buf[j] = CPU_ISSET(j, entry_affinity) ? '1' : '0';
}
if (verbose && with_aff) message("Affinity at entry: %s", buf);
int *cpuid = NULL;
cpu_set_t cpuset;
if (with_aff) {
cpuid = (int *)malloc(nr_affinity_cores * sizeof(int));
int skip = 0;
for (int k = 0; k < nr_affinity_cores; k++) {
int c;
for (c = skip; c < CPU_SETSIZE && !CPU_ISSET(c, entry_affinity); ++c)
;
cpuid[k] = c;
skip = c + 1;
}
#if defined(HAVE_LIBNUMA) && defined(_GNU_SOURCE)
if ((e->policy & engine_policy_cputight) != engine_policy_cputight) {
if (numa_available() >= 0) {
if (nodeID == 0) message("prefer NUMA-distant CPUs");
/* Get list of numa nodes of all available cores. */
int *nodes = (int *)malloc(nr_affinity_cores * sizeof(int));
int nnodes = 0;
for (int i = 0; i < nr_affinity_cores; i++) {
nodes[i] = numa_node_of_cpu(cpuid[i]);
if (nodes[i] > nnodes) nnodes = nodes[i];
}
nnodes += 1;
/* Count cores per node. */
int *core_counts = (int *)malloc(nnodes * sizeof(int));
for (int i = 0; i < nr_affinity_cores; i++) {
core_counts[nodes[i]] = 0;
}
for (int i = 0; i < nr_affinity_cores; i++) {
core_counts[nodes[i]] += 1;
}
/* Index cores within each node. */
int *core_indices = (int *)malloc(nr_affinity_cores * sizeof(int));
for (int i = nr_affinity_cores - 1; i >= 0; i--) { core_indices[i] = core_counts[nodes[i]];
core_counts[nodes[i]] -= 1;
}
/* Now sort so that we pick adjacent cpuids from different nodes
* by sorting internal node core indices. */
int done = 0;
while (!done) {
done = 1;
for (int i = 1; i < nr_affinity_cores; i++) {
if (core_indices[i] < core_indices[i - 1]) {
int t = cpuid[i - 1];
cpuid[i - 1] = cpuid[i];
cpuid[i] = t;
t = core_indices[i - 1];
core_indices[i - 1] = core_indices[i];
core_indices[i] = t;
done = 0;
}
}
}
free(nodes);
free(core_counts);
free(core_indices);
}
}
#endif
} else {
if (nodeID == 0) message("no processor affinity used");
} /* with_aff */
/* Avoid (unexpected) interference between engine and runner threads. We can
* do this once we've made at least one call to engine_entry_affinity and
* maybe numa_node_of_cpu(sched_getcpu()), even if the engine isn't already
* pinned. */
if (with_aff) engine_unpin();
#endif
if (with_aff && nodeID == 0) {
#ifdef HAVE_SETAFFINITY
#ifdef WITH_MPI
printf("[%04i] %s engine_init: cpu map is [ ", nodeID,
clocks_get_timesincestart());
#else
printf("%s engine_init: cpu map is [ ", clocks_get_timesincestart());
#endif
for (int i = 0; i < nr_affinity_cores; i++) printf("%i ", cpuid[i]);
printf("].\n");
#endif
}
/* Are we doing stuff in parallel? */
if (nr_nodes > 1) {
#ifndef WITH_MPI
error("SWIFT was not compiled with MPI support.");
#else
e->policy |= engine_policy_mpi;
if ((e->proxies = (struct proxy *)calloc(sizeof(struct proxy),
engine_maxproxies)) == NULL)
error("Failed to allocate memory for proxies.");
e->nr_proxies = 0;
#endif
}
/* Open some files */
if (e->nodeID == 0) {
/* When restarting append to these files. */
const char *mode;
if (restart)
mode = "a";
else
mode = "w";
char energyfileName[200] = "";
parser_get_opt_param_string(params, "Statistics:energy_file_name",
energyfileName,
engine_default_energy_file_name);
sprintf(energyfileName + strlen(energyfileName), ".txt");
e->file_stats = fopen(energyfileName, mode);
if (!restart) {
fprintf(
e->file_stats,
"#%14s %14s %14s %14s %14s %14s %14s %14s %14s %14s %14s %14s %14s "
"%14s %14s %14s %14s %14s %14s\n",
"Time", "Mass", "E_tot", "E_kin", "E_int", "E_pot", "E_pot_self",
"E_pot_ext", "E_radcool", "Entropy", "p_x", "p_y", "p_z", "ang_x",
"ang_y", "ang_z", "com_x", "com_y", "com_z");
fflush(e->file_stats);
}
char timestepsfileName[200] = "";
parser_get_opt_param_string(params, "Statistics:timestep_file_name",
timestepsfileName,
engine_default_timesteps_file_name);
sprintf(timestepsfileName + strlen(timestepsfileName), "_%d.txt",
nr_nodes * nr_threads);
e->file_timesteps = fopen(timestepsfileName, mode);
if (!restart) {
fprintf(
e->file_timesteps,
"# Host: %s\n# Branch: %s\n# Revision: %s\n# Compiler: %s, "
"Version: %s \n# "
"Number of threads: %d\n# Number of MPI ranks: %d\n# Hydrodynamic "
"scheme: %s\n# Hydrodynamic kernel: %s\n# No. of neighbours: %.2f "
"+/- %.4f\n# Eta: %f\n# Config: %s\n# CFLAGS: %s\n",
hostname(), git_branch(), git_revision(), compiler_name(),
compiler_version(), e->nr_threads, e->nr_nodes, SPH_IMPLEMENTATION,
kernel_name, e->hydro_properties->target_neighbours,
e->hydro_properties->delta_neighbours,
e->hydro_properties->eta_neighbours, configuration_options(),
compilation_cflags());
fprintf(e->file_timesteps,
"# Step Properties: Rebuild=%d, Redistribute=%d, Repartition=%d, "
"Statistics=%d, Snapshot=%d, Restarts=%d\n",
engine_step_prop_rebuild, engine_step_prop_redistribute,
engine_step_prop_repartition, engine_step_prop_statistics,
engine_step_prop_snapshot, engine_step_prop_restarts);
fprintf(e->file_timesteps,
"# %6s %14s %14s %14s %9s %12s %12s %12s %16s [%s] %6s\n", "Step",
"Time", "Scale-factor", "Time-step", "Time-bins", "Updates",
"g-Updates", "s-Updates", "Wall-clock time", clocks_getunit(),
"Props");
fflush(e->file_timesteps);
}
}
/* Print policy */
engine_print_policy(e);
/* Print information about the hydro scheme */
if (e->policy & engine_policy_hydro) if (e->nodeID == 0) hydro_props_print(e->hydro_properties);
/* Print information about the gravity scheme */
if (e->policy & engine_policy_self_gravity)
if (e->nodeID == 0) gravity_props_print(e->gravity_properties);
/* Check we have sensible time bounds */
if (e->time_begin >= e->time_end)
error(
"Final simulation time (t_end = %e) must be larger than the start time "
"(t_beg = %e)",
e->time_end, e->time_begin);
/* Check we have sensible time-step values */
if (e->dt_min > e->dt_max)
error(
"Minimal time-step size (%e) must be smaller than maximal time-step "
"size (%e)",
e->dt_min, e->dt_max);
/* Info about time-steps */
if (e->nodeID == 0) {
message("Absolute minimal timestep size: %e", e->time_base);
float dt_min = e->time_end - e->time_begin;
while (dt_min > e->dt_min) dt_min /= 2.f;
message("Minimal timestep size (on time-line): %e", dt_min);
float dt_max = e->time_end - e->time_begin;
while (dt_max > e->dt_max) dt_max /= 2.f;
message("Maximal timestep size (on time-line): %e", dt_max);
}
if (e->dt_min < e->time_base && e->nodeID == 0)
error(
"Minimal time-step size smaller than the absolute possible minimum "
"dt=%e",
e->time_base);
if (e->dt_max > (e->time_end - e->time_begin) && e->nodeID == 0)
error("Maximal time-step size larger than the simulation run time t=%e",
e->time_end - e->time_begin);
/* Deal with outputs */
if (e->policy & engine_policy_cosmology) {
if (e->delta_time_snapshot <= 1.)
error("Time between snapshots (%e) must be > 1.", e->delta_time_snapshot);
if (e->delta_time_statistics <= 1.)
error("Time between statistics (%e) must be > 1.",
e->delta_time_statistics);
if (e->a_first_snapshot < e->cosmology->a_begin)
error(
"Scale-factor of first snapshot (%e) must be after the simulation "
"start a=%e.",
e->a_first_snapshot, e->cosmology->a_begin);
if (e->a_first_statistics < e->cosmology->a_begin)
error(
"Scale-factor of first stats output (%e) must be after the "
"simulation start a=%e.",
e->a_first_statistics, e->cosmology->a_begin);
} else {
if (e->delta_time_snapshot <= 0.)
error("Time between snapshots (%e) must be positive.", e->delta_time_snapshot);
if (e->delta_time_statistics <= 0.)
error("Time between statistics (%e) must be positive.",
e->delta_time_statistics);
if (e->time_first_snapshot < e->time_begin)
error(
"Time of first snapshot (%e) must be after the simulation start "
"t=%e.",
e->time_first_snapshot, e->time_begin);
if (e->time_first_statistics < e->time_begin)
error(
"Time of first stats output (%e) must be after the simulation start "
"t=%e.",
e->time_first_statistics, e->time_begin);
}
/* Find the time of the first snapshot output */
engine_compute_next_snapshot_time(e);
/* Find the time of the first statistics output */
engine_compute_next_statistics_time(e);
/* Whether restarts are enabled. Yes by default. Can be changed on restart. */
e->restart_dump = parser_get_opt_param_int(params, "Restarts:enable", 1);
/* Whether to save backup copies of the previous restart files. */
e->restart_save = parser_get_opt_param_int(params, "Restarts:save", 1);
/* Whether restarts should be dumped on exit. Not by default. Can be changed
* on restart. */
e->restart_onexit = parser_get_opt_param_int(params, "Restarts:onexit", 0);
/* Hours between restart dumps. Can be changed on restart. */
float dhours =
parser_get_opt_param_float(params, "Restarts:delta_hours", 6.0);
if (e->nodeID == 0) {
if (e->restart_dump)
message("Restarts will be dumped every %f hours", dhours);
else
message("WARNING: restarts will not be dumped");
if (e->verbose && e->restart_onexit)
message("Restarts will be dumped after the final step");
}
/* Internally we use ticks, so convert into a delta ticks. Assumes we can
* convert from ticks into milliseconds. */
e->restart_dt = clocks_to_ticks(dhours * 60.0 * 60.0 * 1000.0);
/* The first dump will happen no sooner than restart_dt ticks in the
* future. */
e->restart_next = getticks() + e->restart_dt;
/* Construct types for MPI communications */
#ifdef WITH_MPI
part_create_mpi_types();
stats_create_MPI_type();
#endif
/* Initialise the collection group. */
collectgroup_init();
/* Initialize the threadpool. */
threadpool_init(&e->threadpool, e->nr_threads);
/* First of all, init the barrier and lock it. */
if (swift_barrier_init(&e->wait_barrier, NULL, e->nr_threads + 1) != 0 || swift_barrier_init(&e->run_barrier, NULL, e->nr_threads + 1) != 0)
error("Failed to initialize barrier.");
/* Expected average for tasks per cell. If set to zero we use a heuristic
* guess based on the numbers of cells and how many tasks per cell we expect.
* On restart this number cannot be estimated (no cells yet), so we recover
* from the end of the dumped run. Can be changed on restart.
*/
e->tasks_per_cell =
parser_get_opt_param_int(params, "Scheduler:tasks_per_cell", 0);
int maxtasks = 0;
if (restart)
maxtasks = e->restart_max_tasks;
else
maxtasks = engine_estimate_nr_tasks(e);
/* Init the scheduler. */
scheduler_init(&e->sched, e->s, maxtasks, nr_queues,
(e->policy & scheduler_flag_steal), e->nodeID, &e->threadpool);
/* Maximum size of MPI task messages, in KB, that should not be buffered,
* that is sent using MPI_Issend, not MPI_Isend. 4Mb by default. Can be
* changed on restart.
*/
e->sched.mpi_message_limit =
parser_get_opt_param_int(params, "Scheduler:mpi_message_limit", 4) * 1024;
/* Allocate and init the threads. */
if (posix_memalign((void **)&e->runners, SWIFT_CACHE_ALIGNMENT,
e->nr_threads * sizeof(struct runner)) != 0)
error("Failed to allocate threads array.");
for (int k = 0; k < e->nr_threads; k++) {
e->runners[k].id = k;
e->runners[k].e = e;
if (pthread_create(&e->runners[k].thread, NULL, &runner_main,
&e->runners[k]) != 0)
error("Failed to create runner thread.");
/* Try to pin the runner to a given core */
if (with_aff &&
(e->policy & engine_policy_setaffinity) == engine_policy_setaffinity) {
#if defined(HAVE_SETAFFINITY)
/* Set a reasonable queue ID. */
int coreid = k % nr_affinity_cores;
e->runners[k].cpuid = cpuid[coreid];
if (nr_queues < e->nr_threads)
e->runners[k].qid = cpuid[coreid] * nr_queues / nr_affinity_cores;
else
e->runners[k].qid = k;
/* Set the cpu mask to zero | e->id. */
CPU_ZERO(&cpuset);
CPU_SET(cpuid[coreid], &cpuset);
/* Apply this mask to the runner's pthread. */
if (pthread_setaffinity_np(e->runners[k].thread, sizeof(cpu_set_t),
&cpuset) != 0)
error("Failed to set thread affinity.");
#else
error("SWIFT was not compiled with affinity enabled.");
#endif
} else {
e->runners[k].cpuid = k;
e->runners[k].qid = k * nr_queues / e->nr_threads;
}
/* Allocate particle caches. */ e->runners[k].ci_gravity_cache.count = 0;
e->runners[k].cj_gravity_cache.count = 0;
gravity_cache_init(&e->runners[k].ci_gravity_cache, space_splitsize);
gravity_cache_init(&e->runners[k].cj_gravity_cache, space_splitsize);
#ifdef WITH_VECTORIZATION
e->runners[k].ci_cache.count = 0;
e->runners[k].cj_cache.count = 0;
cache_init(&e->runners[k].ci_cache, CACHE_SIZE);
cache_init(&e->runners[k].cj_cache, CACHE_SIZE);
#endif
if (verbose) {
if (with_aff)
message("runner %i on cpuid=%i with qid=%i.", e->runners[k].id,
e->runners[k].cpuid, e->runners[k].qid);
else
message("runner %i using qid=%i no cpuid.", e->runners[k].id,
e->runners[k].qid);
}
}
/* Free the affinity stuff */
#if defined(HAVE_SETAFFINITY)
if (with_aff) {
free(cpuid);
}
free(buf);
#endif
/* Wait for the runner threads to be in place. */
swift_barrier_wait(&e->wait_barrier);
}
/**
* @brief Prints the current policy of an engine
*
* @param e The engine to print information about
*/
void engine_print_policy(struct engine *e) {
#ifdef WITH_MPI
if (e->nodeID == 0) {
printf("[0000] %s engine_policy: engine policies are [ ",
clocks_get_timesincestart());
for (int k = 0; k <= engine_maxpolicy; k++)
if (e->policy & (1 << k)) printf(" '%s' ", engine_policy_names[k + 1]);
printf(" ]\n");
fflush(stdout);
}
#else
printf("%s engine_policy: engine policies are [ ",
clocks_get_timesincestart());
for (int k = 0; k <= engine_maxpolicy; k++)
if (e->policy & (1 << k)) printf(" '%s' ", engine_policy_names[k + 1]);
printf(" ]\n");
fflush(stdout);
#endif
}
/**
* @brief Computes the next time (on the time line) for a dump
*
* @param e The #engine.
*/
void engine_compute_next_snapshot_time(struct engine *e) {
/* Find upper-bound on last output */
double time_end;
if (e->policy & engine_policy_cosmology)
time_end = e->cosmology->a_end * e->delta_time_snapshot; else
time_end = e->time_end + e->delta_time_snapshot;
/* Find next snasphot above current time */
double time;
if (e->policy & engine_policy_cosmology)
time = e->a_first_snapshot;
else
time = e->time_first_snapshot;
while (time < time_end) {
/* Output time on the integer timeline */
if (e->policy & engine_policy_cosmology)
e->ti_next_snapshot = log(time / e->cosmology->a_begin) / e->time_base;
else
e->ti_next_snapshot = (time - e->time_begin) / e->time_base;
/* Found it? */
if (e->ti_next_snapshot > e->ti_current) break;
if (e->policy & engine_policy_cosmology)
time *= e->delta_time_snapshot;
else
time += e->delta_time_snapshot;
}
/* Deal with last snapshot */
if (e->ti_next_snapshot >= max_nr_timesteps) {
e->ti_next_snapshot = -1;
if (e->verbose) message("No further output time.");
} else {
/* Be nice, talk... */
if (e->policy & engine_policy_cosmology) {
const double next_snapshot_time =
exp(e->ti_next_snapshot * e->time_base) * e->cosmology->a_begin;
if (e->verbose)
message("Next snapshot time set to a=%e.", next_snapshot_time);
} else {
const double next_snapshot_time =
e->ti_next_snapshot * e->time_base + e->time_begin;
if (e->verbose)
message("Next snapshot time set to t=%e.", next_snapshot_time);
}
}
}
/**
* @brief Computes the next time (on the time line) for a statistics dump
*
* @param e The #engine.
*/
void engine_compute_next_statistics_time(struct engine *e) {
/* Find upper-bound on last output */
double time_end;
if (e->policy & engine_policy_cosmology)
time_end = e->cosmology->a_end * e->delta_time_statistics;
else
time_end = e->time_end + e->delta_time_statistics;
/* Find next snasphot above current time */
double time;
if (e->policy & engine_policy_cosmology)
time = e->a_first_statistics;
else
time = e->time_first_statistics;
while (time < time_end) {
/* Output time on the integer timeline */ if (e->policy & engine_policy_cosmology)
e->ti_next_stats = log(time / e->cosmology->a_begin) / e->time_base;
else
e->ti_next_stats = (time - e->time_begin) / e->time_base;
/* Found it? */
if (e->ti_next_stats > e->ti_current) break;
if (e->policy & engine_policy_cosmology)
time *= e->delta_time_statistics;
else
time += e->delta_time_statistics;
}
/* Deal with last statistics */
if (e->ti_next_stats >= max_nr_timesteps) {
e->ti_next_stats = -1;
if (e->verbose) message("No further output time.");
} else {
/* Be nice, talk... */
if (e->policy & engine_policy_cosmology) {
const double next_statistics_time =
exp(e->ti_next_stats * e->time_base) * e->cosmology->a_begin;
if (e->verbose)
message("Next output time for stats set to a=%e.",
next_statistics_time);
} else {
const double next_statistics_time =
e->ti_next_stats * e->time_base + e->time_begin;
if (e->verbose)
message("Next output time for stats set to t=%e.",
next_statistics_time);
}
}
}
/**
* @brief Computes the maximal time-step allowed by the max RMS displacement
* condition.
*
* @param e The #engine.
*/
void engine_recompute_displacement_constraint(struct engine *e) {
/* Get the cosmological information */
const struct cosmology *cosmo = e->cosmology;
const float Om = cosmo->Omega_m;
const float Ob = cosmo->Omega_b;
const float rho_crit = cosmo->critical_density;
const float a = cosmo->a;
/* Start by reducing the minimal mass of each particle type */
float min_mass[swift_type_count] = {e->s->min_part_mass,
e->s->min_gpart_mass,
FLT_MAX,
FLT_MAX,
e->s->min_spart_mass,
FLT_MAX};
#ifdef SWIFT_DEBUG_CHECKS
/* Check that the minimal mass collection worked */
float min_part_mass_check = FLT_MAX;
for (size_t i = 0; i < e->s->nr_parts; ++i)
min_part_mass_check =
min(min_part_mass_check, hydro_get_mass(&e->s->parts[i]));
if (min_part_mass_check != min_mass[swift_type_gas])
error("Error collecting minimal mass of gas particles.");
#endif
#ifdef WITH_MPI MPI_Allreduce(MPI_IN_PLACE, min_mass, swift_type_count, MPI_FLOAT, MPI_MIN,
MPI_COMM_WORLD);
#endif
/* Do the same for the velocity norm sum */
float vel_norm[swift_type_count] = {e->s->sum_part_vel_norm,
e->s->sum_gpart_vel_norm,
0.f,
0.f,
e->s->sum_spart_vel_norm,
0.f};
#ifdef WITH_MPI
MPI_Allreduce(MPI_IN_PLACE, vel_norm, swift_type_count, MPI_FLOAT, MPI_SUM,
MPI_COMM_WORLD);
#endif
/* Get the counts of each particle types */
const long long total_nr_dm_gparts =
e->total_nr_gparts - e->total_nr_parts - e->total_nr_sparts;
float count_parts[swift_type_count] = {(float)e->total_nr_parts,
(float)total_nr_dm_gparts,
0.f,
0.f,
(float)e->total_nr_sparts,
0.f};
/* Count of particles for the two species */
const float N_dm = count_parts[1];
const float N_b = count_parts[0] + count_parts[4];
/* Peculiar motion norm for the two species */
const float vel_norm_dm = vel_norm[1];
const float vel_norm_b = vel_norm[0] + vel_norm[4];
/* Mesh forces smoothing scale */
float r_s;
if ((e->policy & engine_policy_self_gravity) && e->s->periodic == 1)
r_s = e->mesh->r_s;
else
r_s = FLT_MAX;
float dt_dm = FLT_MAX, dt_b = FLT_MAX;
/* DM case */
if (N_dm > 0.f) {
/* Minimal mass for the DM */
const float min_mass_dm = min_mass[1];
/* Inter-particle sepration for the DM */
const float d_dm = cbrtf(min_mass_dm / ((Om - Ob) * rho_crit));
/* RMS peculiar motion for the DM */
const float rms_vel_dm = vel_norm_dm / N_dm;
/* Time-step based on maximum displacement */
dt_dm = a * a * min(r_s, d_dm) / sqrtf(rms_vel_dm);
}
/* Baryon case */
if (N_b > 0.f) {
/* Minimal mass for the baryons */
const float min_mass_b = min(min_mass[0], min_mass[4]);
/* Inter-particle sepration for the baryons */
const float d_b = cbrtf(min_mass_b / (Ob * rho_crit));
/* RMS peculiar motion for the baryons */
const float rms_vel_b = vel_norm_b / N_b;
/* Time-step based on maximum displacement */
dt_b = a * a * min(r_s, d_b) / sqrtf(rms_vel_b);
}
/* Use the minimum */
const float dt = min(dt_dm, dt_b);
/* Apply the dimensionless factor */
e->dt_max_RMS_displacement = dt * e->max_RMS_displacement_factor;
if (e->verbose)
message("max_dt_RMS_displacement = %e", e->dt_max_RMS_displacement);
}
/**
* @brief Frees up the memory allocated for this #engine
*/
void engine_clean(struct engine *e) {
for (int i = 0; i < e->nr_threads; ++i) {
#ifdef WITH_VECTORIZATION
cache_clean(&e->runners[i].ci_cache);
cache_clean(&e->runners[i].cj_cache);
#endif
gravity_cache_clean(&e->runners[i].ci_gravity_cache);
gravity_cache_clean(&e->runners[i].cj_gravity_cache);
}
free(e->runners);
free(e->snapshot_units);
free(e->links);
scheduler_clean(&e->sched);
space_clean(e->s);
threadpool_clean(&e->threadpool);
}
/**
* @brief Write the engine struct and its contents to the given FILE as a
* stream of bytes.
*
* @param e the engine
* @param stream the file stream
*/
void engine_struct_dump(struct engine *e, FILE *stream) {
/* Dump the engine. Save the current tasks_per_cell estimate. */
e->restart_max_tasks = engine_estimate_nr_tasks(e);
restart_write_blocks(e, sizeof(struct engine), 1, stream, "engine",
"engine struct");
/* And all the engine pointed data, these use their own dump functions. */
space_struct_dump(e->s, stream);
units_struct_dump(e->internal_units, stream);
units_struct_dump(e->snapshot_units, stream);
cosmology_struct_dump(e->cosmology, stream);
#ifdef WITH_MPI
/* Save the partition for restoration. */
partition_store_celllist(e->s, e->reparttype);
partition_struct_dump(e->reparttype, stream);
#endif
phys_const_struct_dump(e->physical_constants, stream);
hydro_props_struct_dump(e->hydro_properties, stream);
gravity_props_struct_dump(e->gravity_properties, stream);
pm_mesh_struct_dump(e->mesh, stream);
potential_struct_dump(e->external_potential, stream);
cooling_struct_dump(e->cooling_func, stream);
chemistry_struct_dump(e->chemistry, stream);
sourceterms_struct_dump(e->sourceterms, stream); parser_struct_dump(e->parameter_file, stream);
}
/**
* @brief Re-create an engine struct and its contents from the given FILE
* stream.
*
* @param e the engine
* @param stream the file stream
*/
void engine_struct_restore(struct engine *e, FILE *stream) {
/* Read the engine. */
restart_read_blocks(e, sizeof(struct engine), 1, stream, NULL,
"engine struct");
/* Re-initializations as necessary for our struct and its members. */
e->sched.tasks = NULL;
e->sched.tasks_ind = NULL;
e->sched.tid_active = NULL;
e->sched.size = 0;
/* Now for the other pointers, these use their own restore functions. */
/* Note all this memory leaks, but is used once. */
struct space *s = (struct space *)malloc(sizeof(struct space));
space_struct_restore(s, stream);
e->s = s;
s->e = e;
struct unit_system *us =
(struct unit_system *)malloc(sizeof(struct unit_system));
units_struct_restore(us, stream);
e->internal_units = us;
us = (struct unit_system *)malloc(sizeof(struct unit_system));
units_struct_restore(us, stream);
e->snapshot_units = us;
struct cosmology *cosmo =
(struct cosmology *)malloc(sizeof(struct cosmology));
cosmology_struct_restore(e->policy & engine_policy_cosmology, cosmo, stream);
e->cosmology = cosmo;
#ifdef WITH_MPI
struct repartition *reparttype =
(struct repartition *)malloc(sizeof(struct repartition));
partition_struct_restore(reparttype, stream);
e->reparttype = reparttype;
#endif
struct phys_const *physical_constants =
(struct phys_const *)malloc(sizeof(struct phys_const));
phys_const_struct_restore(physical_constants, stream);
e->physical_constants = physical_constants;
struct hydro_props *hydro_properties =
(struct hydro_props *)malloc(sizeof(struct hydro_props));
hydro_props_struct_restore(hydro_properties, stream);
e->hydro_properties = hydro_properties;
struct gravity_props *gravity_properties =
(struct gravity_props *)malloc(sizeof(struct gravity_props));
gravity_props_struct_restore(gravity_properties, stream);
e->gravity_properties = gravity_properties;
struct pm_mesh *mesh = (struct pm_mesh *)malloc(sizeof(struct pm_mesh));
pm_mesh_struct_restore(mesh, stream);
e->mesh = mesh;
struct external_potential *external_potential = (struct external_potential *)malloc(sizeof(struct external_potential));
potential_struct_restore(external_potential, stream);
e->external_potential = external_potential;
struct cooling_function_data *cooling_func =
(struct cooling_function_data *)malloc(
sizeof(struct cooling_function_data));
cooling_struct_restore(cooling_func, stream);
e->cooling_func = cooling_func;
struct chemistry_global_data *chemistry =
(struct chemistry_global_data *)malloc(
sizeof(struct chemistry_global_data));
chemistry_struct_restore(chemistry, stream);
e->chemistry = chemistry;
struct sourceterms *sourceterms =
(struct sourceterms *)malloc(sizeof(struct sourceterms));
sourceterms_struct_restore(sourceterms, stream);
e->sourceterms = sourceterms;
struct swift_params *parameter_file =
(struct swift_params *)malloc(sizeof(struct swift_params));
parser_struct_restore(parameter_file, stream);
e->parameter_file = parameter_file;
/* Want to force a rebuild before using this engine. Wait to repartition.*/
e->forcerebuild = 1;
e->forcerepart = 0;
}