Triggered by GitLab Merge Request #38: Loic Hausammann/move_to_cpp => master Lightweight checkout support not available, falling back to full checkout. Checking out git https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git into /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script to read Jenkinsfile Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10 Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' Setting http proxy: 172.17.170.12:8888 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10 skipping resolution of commit 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60, since it originates from another repository Seen branch in repository origin/add_badges Seen branch in repository origin/assume_full_mask Seen branch in repository origin/ensure_omp Seen branch in repository origin/fix_restart Seen branch in repository origin/implement_evolution Seen branch in repository origin/increase_coverage Seen branch in repository origin/intel Seen branch in repository origin/master Seen branch in repository origin/move_to_cpp Seen branch in repository origin/optimizations Seen branch in repository origin/parallel_inversion Seen branch in repository origin/reimplement_header Seen branch in repository origin/restart_index Seen branch in repository origin/revert-d686a372 Seen branch in repository origin/track_mmap Seen branch in repository origin/use_correct_float Seen 16 remote branches > git show-ref --tags -d # timeout=10 Checking out Revision 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60 (origin/move_to_cpp) > git config core.sparsecheckout # timeout=10 > git checkout -f 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60 # timeout=10 Commit message: "Move files into cpp" First time build. Skipping changelog. Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10 Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' Setting http proxy: 172.17.170.12:8888 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10 skipping resolution of commit 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60, since it originates from another repository Seen branch in repository origin/add_badges Seen branch in repository origin/assume_full_mask Seen branch in repository origin/ensure_omp Seen branch in repository origin/fix_restart Seen branch in repository origin/implement_evolution Seen branch in repository origin/increase_coverage Seen branch in repository origin/intel Seen branch in repository origin/master Seen branch in repository origin/move_to_cpp Seen branch in repository origin/optimizations Seen branch in repository origin/parallel_inversion Seen branch in repository origin/reimplement_header Seen branch in repository origin/restart_index Seen branch in repository origin/revert-d686a372 Seen branch in repository origin/track_mmap Seen branch in repository origin/use_correct_float Seen 16 remote branches > git show-ref --tags -d # timeout=10 Checking out Revision 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60 (origin/move_to_cpp) > git config core.sparsecheckout # timeout=10 > git checkout -f 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60 # timeout=10 Commit message: "Move files into cpp" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Standard) [Pipeline] updateGitlabCommitStatus [Pipeline] sh + set -e + module purge + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash purge + eval unset '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'JAVA_HOME; MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset JAVA_HOME ++ MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1 ++ export MANPATH_modshare ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load gnu_comp/7.3.0 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load gnu_comp/7.3.0 + eval 'CPATH=/cosma/local/gcc/7.3.0/include;' export 'CPATH; I_MPI_F90=gfortran;' export 'I_MPI_F90; LDFLAGS=-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'LDFLAGS; _COSMA_SYS=gnu_7.3.0;' export '_COSMA_SYS; OMPI_FCFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'OMPI_FCFLAGS; F77=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F77; MPI_CXX_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_CXX_OPTIONS_modshare; MPI_CC_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_CC_OPTIONS; I_MPI_CXX=g++;' export 'I_MPI_CXX; MANPATH=/cosma/local/gcc/7.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/7.3.0/include:1;' export 'CMAKE_INCLUDE_PATH_modshare; F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2;' export 'F90_MODULE_FLAGS_modshare; MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/cosma/local/gcc/7.3.0/share/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare; OMPI_CPPFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'OMPI_CPPFLAGS; OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2;' export 'OMPI_FCFLAGS_modshare; F90=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F90; CMAKE_INCLUDE_PATH=/cosma/local/gcc/7.3.0/include;' export 'CMAKE_INCLUDE_PATH; F90_MODULE_FLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'F90_MODULE_FLAGS; OMPI_LDFLAGS=-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'OMPI_LDFLAGS; CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1;' export 'CPPFLAGS_modshare; OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1;' export 'OMPI_LDFLAGS_modshare; COSMA_OPT=-O3\' '-march=native;' export 'COSMA_OPT; PATH=/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; CC=/cosma/local/gcc/7.3.0/bin/gcc;' export 'CC; CPPFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'CPPFLAGS; MPI_F90_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_F90_OPTIONS_modshare; LOADEDMODULES=gnu_comp/7.3.0;' export 'LOADEDMODULES; I_MPI_CC=gcc;' export 'I_MPI_CC; CXX=/cosma/local/gcc/7.3.0/bin/g++;' export 'CXX; MPI_F77_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_F77_OPTIONS; GNUROOT=/cosma/local/gcc/7.3.0;' export 'GNUROOT; LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LDFLAGS_modshare; QMAKESPEC=linux-g++-64;' export 'QMAKESPEC; LD_RUN_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LD_RUN_PATH_modshare; LOADEDMODULES_modshare=gnu_comp/7.3.0:1;' export 'LOADEDMODULES_modshare; OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1;' export 'OMPI_CPPFLAGS_modshare; MPI_F90_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_F90_OPTIONS; LD_RUN_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'LD_RUN_PATH; LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'LIBRARY_PATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0;' export '_LMFILES_; LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LIBRARY_PATH_modshare; MPI_CC_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_CC_OPTIONS_modshare; I_MPI_F77=gfortran;' export 'I_MPI_F77; FC=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'FC; CMAKE_LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'CMAKE_LIBRARY_PATH; CPATH_modshare=/cosma/local/gcc/7.3.0/include:2;' export 'CPATH_modshare; MPI_CXX_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_CXX_OPTIONS; CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'CMAKE_LIBRARY_PATH_modshare; _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1;' export '_LMFILES__modshare; MPI_F77_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_F77_OPTIONS_modshare; F9X=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F9X; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ CPATH=/cosma/local/gcc/7.3.0/include ++ export CPATH ++ I_MPI_F90=gfortran ++ export I_MPI_F90 ++ LDFLAGS='-L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export LDFLAGS ++ _COSMA_SYS=gnu_7.3.0 ++ export _COSMA_SYS ++ OMPI_FCFLAGS=-I/cosma/local/gcc/7.3.0/include ++ export OMPI_FCFLAGS ++ F77=/cosma/local/gcc/7.3.0/bin/gfortran ++ export F77 ++ MPI_CXX_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1 ++ export MPI_CXX_OPTIONS_modshare ++ MPI_CC_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export MPI_CC_OPTIONS ++ I_MPI_CXX=g++ ++ export I_MPI_CXX ++ MANPATH=/cosma/local/gcc/7.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/7.3.0/include:1 ++ export CMAKE_INCLUDE_PATH_modshare ++ F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2 ++ export F90_MODULE_FLAGS_modshare ++ MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/cosma/local/gcc/7.3.0/share/man:1:/usr/share/man:1:/usr/local/man:1 ++ export MANPATH_modshare ++ OMPI_CPPFLAGS=-I/cosma/local/gcc/7.3.0/include ++ export OMPI_CPPFLAGS ++ OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2 ++ export OMPI_FCFLAGS_modshare ++ F90=/cosma/local/gcc/7.3.0/bin/gfortran ++ export F90 ++ CMAKE_INCLUDE_PATH=/cosma/local/gcc/7.3.0/include ++ export CMAKE_INCLUDE_PATH ++ F90_MODULE_FLAGS=-I/cosma/local/gcc/7.3.0/include ++ export F90_MODULE_FLAGS ++ OMPI_LDFLAGS='-L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export OMPI_LDFLAGS ++ CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1 ++ export CPPFLAGS_modshare ++ OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1 ++ export OMPI_LDFLAGS_modshare ++ COSMA_OPT='-O3 -march=native' ++ export COSMA_OPT ++ PATH=/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ CC=/cosma/local/gcc/7.3.0/bin/gcc ++ export CC ++ CPPFLAGS=-I/cosma/local/gcc/7.3.0/include ++ export CPPFLAGS ++ MPI_F90_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1 ++ export MPI_F90_OPTIONS_modshare ++ LOADEDMODULES=gnu_comp/7.3.0 ++ export LOADEDMODULES ++ I_MPI_CC=gcc ++ export I_MPI_CC ++ CXX=/cosma/local/gcc/7.3.0/bin/g++ ++ export CXX ++ MPI_F77_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export MPI_F77_OPTIONS ++ GNUROOT=/cosma/local/gcc/7.3.0 ++ export GNUROOT ++ LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1 ++ export LDFLAGS_modshare ++ QMAKESPEC=linux-g++-64 ++ export QMAKESPEC ++ LD_RUN_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1 ++ export LD_RUN_PATH_modshare ++ LOADEDMODULES_modshare=gnu_comp/7.3.0:1 ++ export LOADEDMODULES_modshare ++ OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1 ++ export OMPI_CPPFLAGS_modshare ++ MPI_F90_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export MPI_F90_OPTIONS ++ LD_RUN_PATH=/cosma/local/gcc/7.3.0/lib64/ ++ export LD_RUN_PATH ++ LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/ ++ export LIBRARY_PATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0 ++ export _LMFILES_ ++ LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1 ++ export LIBRARY_PATH_modshare ++ MPI_CC_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1 ++ export MPI_CC_OPTIONS_modshare ++ I_MPI_F77=gfortran ++ export I_MPI_F77 ++ FC=/cosma/local/gcc/7.3.0/bin/gfortran ++ export FC ++ CMAKE_LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/ ++ export CMAKE_LIBRARY_PATH ++ CPATH_modshare=/cosma/local/gcc/7.3.0/include:2 ++ export CPATH_modshare ++ MPI_CXX_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export MPI_CXX_OPTIONS ++ CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1 ++ export CMAKE_LIBRARY_PATH_modshare ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1 ++ export _LMFILES__modshare ++ MPI_F77_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1 ++ export MPI_F77_OPTIONS_modshare ++ F9X=/cosma/local/gcc/7.3.0/bin/gfortran ++ export F9X ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load llvm/10.0.1 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load llvm/10.0.1 + eval '_LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/7.3.0:1;' export 'LOADEDMODULES_modshare; PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1;' export '_LMFILES_; LOADEDMODULES=gnu_comp/7.3.0:llvm/10.0.1;' export 'LOADEDMODULES; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/7.3.0:1 ++ export LOADEDMODULES_modshare ++ PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1 ++ export _LMFILES_ ++ LOADEDMODULES=gnu_comp/7.3.0:llvm/10.0.1 ++ export LOADEDMODULES ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + export CLANG_FORMAT_CMD=clang-format + CLANG_FORMAT_CMD=clang-format + git clean -fdx Removing Makefile Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing compile Removing config.guess Removing config.h Removing config.h.in Removing config.log Removing config.status Removing config.sub Removing configure Removing depcomp Removing install-sh Removing libtool Removing ltmain.sh Removing m4/libtool.m4 Removing m4/ltoptions.m4 Removing m4/ltsugar.m4 Removing m4/ltversion.m4 Removing m4/lt~obsolete.m4 Removing missing Removing src/.deps/ Removing src/Makefile Removing src/Makefile.in Removing src/csds_version.h Removing stamp-h1 Removing test-driver Removing tests/.deps/ Removing tests/Makefile Removing tests/Makefile.in Removing tests/testHashmap.bin Removing tests/test_header_0000.dump Removing tests/test_reader_0000.dump Removing tests/test_reader_0000_0000.index Removing tests/test_reader_0000_0001.index Removing tests/test_reader_0000_0002.index Removing tests/test_reader_0000_0003.index Removing tests/test_reader_0000_0004.index Removing tests/testvr_0000.dump Removing tests/testvr_0000_0000.index Removing tests/testvr_0000_0001.index Removing tests/testvr_0000_0002.index Removing tests/testvr_0000_0003.index Removing tests/testvr_0000_0004.index + ./autogen.sh libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:83: installing './config.guess' configure.ac:83: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' + ./configure configure: error: cannot find sources (src/csds_header.c) in . or .. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Python) Stage "Python" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (No OpenMP) Stage "No OpenMP" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Debugging/Coverage) Stage "Debugging/Coverage" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Intel) Stage "Intel" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE