Triggered by GitLab Merge Request #38: Loic Hausammann/move_to_cpp => master
Lightweight checkout support not available, falling back to full checkout.
Checking out git https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git into /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script to read Jenkinsfile
Selected Git installation does not exist. Using Default
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10
Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
Setting http proxy: 172.17.170.12:8888
 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10
skipping resolution of commit 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60, since it originates from another repository
Seen branch in repository origin/add_badges
Seen branch in repository origin/assume_full_mask
Seen branch in repository origin/ensure_omp
Seen branch in repository origin/fix_restart
Seen branch in repository origin/implement_evolution
Seen branch in repository origin/increase_coverage
Seen branch in repository origin/intel
Seen branch in repository origin/master
Seen branch in repository origin/move_to_cpp
Seen branch in repository origin/optimizations
Seen branch in repository origin/parallel_inversion
Seen branch in repository origin/reimplement_header
Seen branch in repository origin/restart_index
Seen branch in repository origin/revert-d686a372
Seen branch in repository origin/track_mmap
Seen branch in repository origin/use_correct_float
Seen 16 remote branches
 > git show-ref --tags -d # timeout=10
Checking out Revision 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60 (origin/move_to_cpp)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60 # timeout=10
Commit message: "Move files into cpp"
First time build. Skipping changelog.
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
Selected Git installation does not exist. Using Default
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10
Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
Setting http proxy: 172.17.170.12:8888
 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10
skipping resolution of commit 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60, since it originates from another repository
Seen branch in repository origin/add_badges
Seen branch in repository origin/assume_full_mask
Seen branch in repository origin/ensure_omp
Seen branch in repository origin/fix_restart
Seen branch in repository origin/implement_evolution
Seen branch in repository origin/increase_coverage
Seen branch in repository origin/intel
Seen branch in repository origin/master
Seen branch in repository origin/move_to_cpp
Seen branch in repository origin/optimizations
Seen branch in repository origin/parallel_inversion
Seen branch in repository origin/reimplement_header
Seen branch in repository origin/restart_index
Seen branch in repository origin/revert-d686a372
Seen branch in repository origin/track_mmap
Seen branch in repository origin/use_correct_float
Seen 16 remote branches
 > git show-ref --tags -d # timeout=10
Checking out Revision 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60 (origin/move_to_cpp)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 9ced0afe43d60e23dac2249c16a2f60c4b5c1d60 # timeout=10
Commit message: "Move files into cpp"
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Standard)
[Pipeline] updateGitlabCommitStatus
[Pipeline] sh
+ set -e
+ module purge
+ unset _mlre _mlIFS _mlshdbg
+ '[' 0 = 1 ']'
+ '[' -n x ']'
+ _mlIFS=' 	
'
+ IFS=' '
+ '[' -n '' ']'
++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash purge
+ eval unset '_LMFILES__modshare;
unset' 'LOADEDMODULES_modshare;
MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH;
PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH;
unset' '_LMFILES_;
unset' 'LOADEDMODULES;
unset' 'JAVA_HOME;
MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare;
PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1;' export 'PATH_modshare;
test' '0;'
++ unset _LMFILES__modshare
++ unset LOADEDMODULES_modshare
++ MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man
++ export MANPATH
++ PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin
++ export PATH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ unset JAVA_HOME
++ MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1
++ export MANPATH_modshare
++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1
++ export PATH_modshare
++ test 0
+ _mlstatus=0
+ '[' -n x ']'
+ IFS=' 	
'
+ '[' -n '' ']'
+ unset _mlre _mlv _mlrv _mlIFS _mlshdbg
+ return 0
+ module load gnu_comp/7.3.0
+ unset _mlre _mlIFS _mlshdbg
+ '[' 0 = 1 ']'
+ '[' -n x ']'
+ _mlIFS=' 	
'
+ IFS=' '
+ '[' -n '' ']'
++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load gnu_comp/7.3.0
+ eval 'CPATH=/cosma/local/gcc/7.3.0/include;' export 'CPATH;
I_MPI_F90=gfortran;' export 'I_MPI_F90;
LDFLAGS=-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'LDFLAGS;
_COSMA_SYS=gnu_7.3.0;' export '_COSMA_SYS;
OMPI_FCFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'OMPI_FCFLAGS;
F77=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F77;
MPI_CXX_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_CXX_OPTIONS_modshare;
MPI_CC_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_CC_OPTIONS;
I_MPI_CXX=g++;' export 'I_MPI_CXX;
MANPATH=/cosma/local/gcc/7.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH;
CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/7.3.0/include:1;' export 'CMAKE_INCLUDE_PATH_modshare;
F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2;' export 'F90_MODULE_FLAGS_modshare;
MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/cosma/local/gcc/7.3.0/share/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare;
OMPI_CPPFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'OMPI_CPPFLAGS;
OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2;' export 'OMPI_FCFLAGS_modshare;
F90=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F90;
CMAKE_INCLUDE_PATH=/cosma/local/gcc/7.3.0/include;' export 'CMAKE_INCLUDE_PATH;
F90_MODULE_FLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'F90_MODULE_FLAGS;
OMPI_LDFLAGS=-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'OMPI_LDFLAGS;
CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1;' export 'CPPFLAGS_modshare;
OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1;' export 'OMPI_LDFLAGS_modshare;
COSMA_OPT=-O3\' '-march=native;' export 'COSMA_OPT;
PATH=/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH;
CC=/cosma/local/gcc/7.3.0/bin/gcc;' export 'CC;
CPPFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'CPPFLAGS;
MPI_F90_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_F90_OPTIONS_modshare;
LOADEDMODULES=gnu_comp/7.3.0;' export 'LOADEDMODULES;
I_MPI_CC=gcc;' export 'I_MPI_CC;
CXX=/cosma/local/gcc/7.3.0/bin/g++;' export 'CXX;
MPI_F77_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_F77_OPTIONS;
GNUROOT=/cosma/local/gcc/7.3.0;' export 'GNUROOT;
LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LDFLAGS_modshare;
QMAKESPEC=linux-g++-64;' export 'QMAKESPEC;
LD_RUN_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LD_RUN_PATH_modshare;
LOADEDMODULES_modshare=gnu_comp/7.3.0:1;' export 'LOADEDMODULES_modshare;
OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1;' export 'OMPI_CPPFLAGS_modshare;
MPI_F90_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_F90_OPTIONS;
LD_RUN_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'LD_RUN_PATH;
LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'LIBRARY_PATH;
_LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0;' export '_LMFILES_;
LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LIBRARY_PATH_modshare;
MPI_CC_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_CC_OPTIONS_modshare;
I_MPI_F77=gfortran;' export 'I_MPI_F77;
FC=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'FC;
CMAKE_LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'CMAKE_LIBRARY_PATH;
CPATH_modshare=/cosma/local/gcc/7.3.0/include:2;' export 'CPATH_modshare;
MPI_CXX_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_CXX_OPTIONS;
CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'CMAKE_LIBRARY_PATH_modshare;
_LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1;' export '_LMFILES__modshare;
MPI_F77_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_F77_OPTIONS_modshare;
F9X=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F9X;
PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1;' export 'PATH_modshare;
test' '0;'
++ CPATH=/cosma/local/gcc/7.3.0/include
++ export CPATH
++ I_MPI_F90=gfortran
++ export I_MPI_F90
++ LDFLAGS='-L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/'
++ export LDFLAGS
++ _COSMA_SYS=gnu_7.3.0
++ export _COSMA_SYS
++ OMPI_FCFLAGS=-I/cosma/local/gcc/7.3.0/include
++ export OMPI_FCFLAGS
++ F77=/cosma/local/gcc/7.3.0/bin/gfortran
++ export F77
++ MPI_CXX_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1
++ export MPI_CXX_OPTIONS_modshare
++ MPI_CC_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/'
++ export MPI_CC_OPTIONS
++ I_MPI_CXX=g++
++ export I_MPI_CXX
++ MANPATH=/cosma/local/gcc/7.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man
++ export MANPATH
++ CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/7.3.0/include:1
++ export CMAKE_INCLUDE_PATH_modshare
++ F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2
++ export F90_MODULE_FLAGS_modshare
++ MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/cosma/local/gcc/7.3.0/share/man:1:/usr/share/man:1:/usr/local/man:1
++ export MANPATH_modshare
++ OMPI_CPPFLAGS=-I/cosma/local/gcc/7.3.0/include
++ export OMPI_CPPFLAGS
++ OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2
++ export OMPI_FCFLAGS_modshare
++ F90=/cosma/local/gcc/7.3.0/bin/gfortran
++ export F90
++ CMAKE_INCLUDE_PATH=/cosma/local/gcc/7.3.0/include
++ export CMAKE_INCLUDE_PATH
++ F90_MODULE_FLAGS=-I/cosma/local/gcc/7.3.0/include
++ export F90_MODULE_FLAGS
++ OMPI_LDFLAGS='-L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/'
++ export OMPI_LDFLAGS
++ CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1
++ export CPPFLAGS_modshare
++ OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1
++ export OMPI_LDFLAGS_modshare
++ COSMA_OPT='-O3 -march=native'
++ export COSMA_OPT
++ PATH=/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin
++ export PATH
++ CC=/cosma/local/gcc/7.3.0/bin/gcc
++ export CC
++ CPPFLAGS=-I/cosma/local/gcc/7.3.0/include
++ export CPPFLAGS
++ MPI_F90_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1
++ export MPI_F90_OPTIONS_modshare
++ LOADEDMODULES=gnu_comp/7.3.0
++ export LOADEDMODULES
++ I_MPI_CC=gcc
++ export I_MPI_CC
++ CXX=/cosma/local/gcc/7.3.0/bin/g++
++ export CXX
++ MPI_F77_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/'
++ export MPI_F77_OPTIONS
++ GNUROOT=/cosma/local/gcc/7.3.0
++ export GNUROOT
++ LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1
++ export LDFLAGS_modshare
++ QMAKESPEC=linux-g++-64
++ export QMAKESPEC
++ LD_RUN_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1
++ export LD_RUN_PATH_modshare
++ LOADEDMODULES_modshare=gnu_comp/7.3.0:1
++ export LOADEDMODULES_modshare
++ OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1
++ export OMPI_CPPFLAGS_modshare
++ MPI_F90_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/'
++ export MPI_F90_OPTIONS
++ LD_RUN_PATH=/cosma/local/gcc/7.3.0/lib64/
++ export LD_RUN_PATH
++ LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/
++ export LIBRARY_PATH
++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0
++ export _LMFILES_
++ LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1
++ export LIBRARY_PATH_modshare
++ MPI_CC_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1
++ export MPI_CC_OPTIONS_modshare
++ I_MPI_F77=gfortran
++ export I_MPI_F77
++ FC=/cosma/local/gcc/7.3.0/bin/gfortran
++ export FC
++ CMAKE_LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/
++ export CMAKE_LIBRARY_PATH
++ CPATH_modshare=/cosma/local/gcc/7.3.0/include:2
++ export CPATH_modshare
++ MPI_CXX_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/'
++ export MPI_CXX_OPTIONS
++ CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1
++ export CMAKE_LIBRARY_PATH_modshare
++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1
++ export _LMFILES__modshare
++ MPI_F77_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1
++ export MPI_F77_OPTIONS_modshare
++ F9X=/cosma/local/gcc/7.3.0/bin/gfortran
++ export F9X
++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1
++ export PATH_modshare
++ test 0
+ _mlstatus=0
+ '[' -n x ']'
+ IFS=' 	
'
+ '[' -n '' ']'
+ unset _mlre _mlv _mlrv _mlIFS _mlshdbg
+ return 0
+ module load llvm/10.0.1
+ unset _mlre _mlIFS _mlshdbg
+ '[' 0 = 1 ']'
+ '[' -n x ']'
+ _mlIFS=' 	
'
+ IFS=' '
+ '[' -n '' ']'
++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load llvm/10.0.1
+ eval '_LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1;' export '_LMFILES__modshare;
LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/7.3.0:1;' export 'LOADEDMODULES_modshare;
PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH;
_LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1;' export '_LMFILES_;
LOADEDMODULES=gnu_comp/7.3.0:llvm/10.0.1;' export 'LOADEDMODULES;
PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/usr/local/bin:1;' export 'PATH_modshare;
test' '0;'
++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1
++ export _LMFILES__modshare
++ LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/7.3.0:1
++ export LOADEDMODULES_modshare
++ PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin
++ export PATH
++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1
++ export _LMFILES_
++ LOADEDMODULES=gnu_comp/7.3.0:llvm/10.0.1
++ export LOADEDMODULES
++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/usr/local/bin:1
++ export PATH_modshare
++ test 0
+ _mlstatus=0
+ '[' -n x ']'
+ IFS=' 	
'
+ '[' -n '' ']'
+ unset _mlre _mlv _mlrv _mlIFS _mlshdbg
+ return 0
+ export CLANG_FORMAT_CMD=clang-format
+ CLANG_FORMAT_CMD=clang-format
+ git clean -fdx
Removing Makefile
Removing Makefile.in
Removing aclocal.m4
Removing autom4te.cache/
Removing compile
Removing config.guess
Removing config.h
Removing config.h.in
Removing config.log
Removing config.status
Removing config.sub
Removing configure
Removing depcomp
Removing install-sh
Removing libtool
Removing ltmain.sh
Removing m4/libtool.m4
Removing m4/ltoptions.m4
Removing m4/ltsugar.m4
Removing m4/ltversion.m4
Removing m4/lt~obsolete.m4
Removing missing
Removing src/.deps/
Removing src/Makefile
Removing src/Makefile.in
Removing src/csds_version.h
Removing stamp-h1
Removing test-driver
Removing tests/.deps/
Removing tests/Makefile
Removing tests/Makefile.in
Removing tests/testHashmap.bin
Removing tests/test_header_0000.dump
Removing tests/test_reader_0000.dump
Removing tests/test_reader_0000_0000.index
Removing tests/test_reader_0000_0001.index
Removing tests/test_reader_0000_0002.index
Removing tests/test_reader_0000_0003.index
Removing tests/test_reader_0000_0004.index
Removing tests/testvr_0000.dump
Removing tests/testvr_0000_0000.index
Removing tests/testvr_0000_0001.index
Removing tests/testvr_0000_0002.index
Removing tests/testvr_0000_0003.index
Removing tests/testvr_0000_0004.index
+ ./autogen.sh
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'.
libtoolize: linking file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: linking file `m4/libtool.m4'
libtoolize: linking file `m4/ltoptions.m4'
libtoolize: linking file `m4/ltsugar.m4'
libtoolize: linking file `m4/ltversion.m4'
libtoolize: linking file `m4/lt~obsolete.m4'
configure.ac:83: installing './config.guess'
configure.ac:83: installing './config.sub'
configure.ac:50: installing './install-sh'
configure.ac:50: installing './missing'
Makefile.am: installing './INSTALL'
Makefile.am: installing './COPYING' using GNU General Public License v3 file
Makefile.am:     Consider adding the COPYING file to the version control system
Makefile.am:     for your code, to avoid questions about which license your project uses
src/Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
+ ./configure
configure: error: cannot find sources (src/csds_header.c) in . or ..
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Python)
Stage "Python" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (No OpenMP)
Stage "No OpenMP" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Debugging/Coverage)
Stage "Debugging/Coverage" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Intel)
Stage "Intel" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE