Changes

Summary

1. Update the X-ray tables to their newest version (details)
2. Fix a bug when running with multiple non-degenerate neutrino species (details)
3. Resolve "--enable-timers causes compilation error on master" (details)
4. Post merge spin jet fix (details)
5. Code formatting (details)
6. Convert printf to errors in the X-ray extra i/o (details)
7. Making it official (details)
8. GEARRT cosmological thermochemistry (details)
9. GEAR-RT redshifting photons (details)
10. Fix to get swiftsimio to read the SFR logger with the EAGLE model switched on (details)
11. Fix compilation of the power spectrum code in the absence of FFTW (details)
12. Fix computation of the potential energy in the isothermal potential case (details)
13. Fix io for a jet-related tracer (details)
14. Fix jet tracer variable type (details)
15. Fix MPI type mistakes reported by oneAPI (details)
16. Add missing -fopenmp for csds writer compilation in Swift (details)
17. Fix -Wadress warning (details)
18. Changed -fopenmp --> $OPENMP_CFLAGS in configure.ac (details)
19. Update reference to paper in the RTD (details)
20. Sink : bugs fixing (details)
21. Add the necessary sink-related initialisations in the unit tests (details)
22. Update spin/jet RTD (details)
23. possible fix to the FOF in hydro runs (details)
24. Added missing include in the general swift.h (details)
25. Cleaner separation between sink.h and sink_iact.h (details)
26. Add missing file (details)
27. Grackle cooling primordial abundances (details)
28. Add missing include now that the sink_iact.h has been split off from sink.h (details)
29. Applied formatting scripts (details)
30. Add information to the output list about size of the arrays (details)
31. Fix warning reported by GCC-14 (details)
32. Fix Grackle cooling MULTI_COOL error with metal (details)
33. Rename space_getsid to space_getsid_and_swap_cells() to try to prevent mistakes where wrong cell pointers collected before the call are reused after the swapping has happened. The new name may alleviate part of this (details)
34. Add free parameter (normalisation) to variable accretion efficiency scaling (details)
35. Fix to the recording triggers. Coming from COLIBRE downstream fork. (details)
36. Add more info to the output field file. Comping from downstream fork. (details)
37. Call particle_splitting_update_binary_tree with the correct argument order (details)
38. Another master->zoom_merge update (details)
39. Sink homogeneous box example (details)
40. Code formatting (details)
41. Code formatting (details)
42. Add a DMantissa21 filter and update the documentation to warn about the... (details)
43. Separating zoom and background `space_subdepth_diff_grav` treatments (details)
44. Fix incorrect base type in DMantissa21 filter (details)
45. Downstream fix to the LOS code which could overflow the parser parameter list size in the middle of a run. A check is now in place at the start (details)
46. Add missing BH output fields to spin-jet code (details)
47. Fixing some zoom issues/bugs (details)
48. Splitting mesh threadpools to improve performance (details)
49. Sink Homogeneous box IC : Give the correct velocity array size (details)
50. Applied formatting script (details)
51. ignore the feedback of stars with a negative birth_scale_factor or birth_time (details)
52. Resolve "GEAR stars : update stars_compute_timestep" (details)
53. IsolatedGalaxy_pNbody (details)
54. Augment the i/o meta-data to inform whether fields are stored in physical and if so, whether they can be converted back to comoving (details)
55. Update planetary examples and initial conditions hdf5 field names (details)
56. GEAR stars : fix negative initial metallicity (details)
57. Change the clang formatting version number from 13 to 18. (details)
58. Add missing commas to GEAR SF IO (details)
59. Applied updated formatting script (details)
60. Switch the arguments of the calloc calls in engine_resitribute.c to make GCC 14.1 happier. This has no consequences (details)
61. Fix another instance of calloc call with flipped arguments according to GCC 14.1 (details)
62. Fix yet another typo... (details)
63. Fix print formats (details)
64. GEAR sink: Add io outputs (details)
65. Fixes for GCC 14 toolchain on COSMA (details)
66. Sink : chemistry interface improvements (details)
67. Temporarily disable the voronoi 2D unit test (details)
68. Formatting for llvm/18.1.8 on COSMA (details)
69. Sink : Update functions documentation (details)
70. Fix unitialised structure member in unit test (details)
71. Sink : hide GEAR details into its module (details)
72. Impose a minimum hdf5 API version of 1.8 to handle all our compression schemes (details)
73. Fix typo in serial_io.c (details)
74. Code formatting (details)
75. Fixes for Intel 2024 toolchain (details)
76. Remove unused variable (details)
77. Need extra bin in histogram (sanitizer report) (details)
78. Fix leaks reported by the sanitizer (stops non-zero exit when checking) (details)
79. Don't clean cache when not used (details)
80. Skip when not in a git repo (details)
81. Allow rounding in the conversion to double and back (details)
82. New example of isolated dSph models (details)
83. GEAR : cleanup feedback (details)
84. Add CSDS to SmallCosmoVolume_DM example (details)
85. GEAR stellar evolution : Add SNIa to stars representing the continuous IMF part (details)
86. Fix star resort logic for concurrent SF from gas and sinks (details)
87. Update thermal AGN feedback field descriptions in the spin-jet model (details)
88. Disable FPE trapping when using unsafe maths. (details)
89. GEAR sink: update newborn stars positions and velocities (details)
90. Darwin/gear sink fixes (details)
91. Fix when passing a particle ID to initialise split information struct (details)
92. Update zoom_merge with master updates (after wrangling immense conflicts) (details)
93. Fix output warnings for printf hsize_t mismatch (details)
94. Superficial removal of rogue new lines in cosmology debug check (details)
95. fix new IO stuff in gearrt (details)
96. ran formatting tool (details)
97. Yet another master into zoom buffer branch merge (with formatting all done!) (details)
98. GEAR stars: Move star_type from feedback module to stars (details)
99. Fix the missing particle counter in zoom IO (details)
100. remove numpy deprecation warning in RT plotting scripts (details)
101. Modfications for making the zoom tasks at the void level (details)
102. Fix typo in the Gadget2 scheme introduced when the adaptive softening scheme option was added (details)
103. Splitting void cell tasks to get MMs and self/pair tasks. (details)
104. GEAR : fix the SN energy when the stars must not do feedback (details)
105. Add sink particles to IsolatedGalaxy_multi_component/GEAR (details)
106. Initial high level changes from `moving_mesh` (details)
107. GEAR sink : Improve swallowing conditions (details)
108. Applied code formatting script (details)
109. GEARRT + SPHENIX: Radiation Transport (details)
110. Code formatting (details)
111. GEAR sink : final chunk from the big MR (details)
112. Void cell tree modifications to `grav/down` and long range gravity (details)
113. Implementing top down task creation from void cells to zoom cells (final logic and timestep modifications) (details)
114. Merging latest changes in zoom buffer branch (details)
115. Fix "Crash when compiling with grackle_1 2 or 3 but running without --cooling" (details)
116. Make the formatting script ignore the three files that are formatted differently on different machines using the same clan-format version (details)
117. Log the splits going beyond the maximal allowed into a file (details)
118. GEAR sink improvements (details)
119. GEAR sink IMF sampling theory (details)
120. Fix typos (details)
121. Allow compilation of EAGLE SF with none tracers (details)
122. Fixes the trigger quantities computed for the last snapshot in a list (details)
123. Fixing void cell pointer array renaming in tests (details)
124. Fixes to allow the code to run with the EAGLE model spawning stars (details)
125. GEAR sink : update the temperature and density thresholds criterion (details)
126. Sink iact overhauled to match BHs (details)
127. Add missing file to the out-of-source build target (details)
128. Remove entirely the marktasks function. (details)
129. Simplified switch to doing progeny MM properly for void cells (details)
130. Introducing MM subtypes + some void task clean up (details)
131. Small adjustments to GEAR modules (details)
132. Sink density tasks (details)
133. Bug fix: shift variable set but not used in sink density loop (details)
134. Fix SPIN-JET code for EAGLE (details)
135. Applied formatting script (details)
136. Applied code formatting script (details)
137. Add new option to --with-subgrid (details)
138. Modify zoom geometry init to align buffer cells (details)
139. Adapt the cell splitting logic to split buffer cells within the void tree (details)
140. Task modifications to account for "all the way down" void cell tree (details)
141. GEAR sink: add a minimal mass to sink (details)
142. Adapting the regriding to account for the new geometry calculation (details)
143. Sink MPI part 1: engine, proxies and strays (details)
144. Washing SWIFT's mouth out with soap (fixing a typo) (details)
145. GEAR sinks: add better time-step and sink merging constraints (details)
146. Add missing C_CFL parameter in HomogeneousBoxSinkParticles example (details)
147. Void cell tree the whole way down (with better zoom geometry init) (details)
148. Fixing zoom dist build (details)
149. Another master merged into the zoom branches (details)
150. fixed restart.c (details)
151. removed static attribute (details)
152. Only activate the tend comms that are needed (details)
153. Clean-up of interaction function signatures (details)
154. Add the depth_h variable carried by every particle when using the subtask_speedup branch (details)
155. Added the loop debugging check counters to the planetary scheme (details)
156. Also add the depth to the stars, BHs, and sink particles (details)
157. Update the runtime analysis script to use the new FOF function names and to stop python warnings (details)
158. Resolve "MWPotential2014 : Amplitude must have a unit" (details)
159. Smoothing lengths for sinks (details)
160. Update symmetry test for new sink iact arguments (details)
161. Set the min/max h allowed at a given tree level in the cells. Set the particle's depth in the rebuild and in the drift (details)
162. Add a spin lock for the extra sort (details)
163. Add the option for the sort task to use the new cell lock (details)
164. Also update the unit tests to use the new sorting function signature (details)
165. Silence debugging message in the stray exchange (details)
166. Add check verifying the global number of sends and receives is the same (details)
167. Add the runtime constants needed by the new recursion (details)
168. Fix function signature (details)
169. Add the PS calculation to the list of timed functions (details)
170. Python code formatting (details)
171. Only accumulate the number of tasks in a cell in debugging mode (details)
172. Print GEAR physics with MPI rank 0 (details)
173. Another master merge into the zoom buffer branch (details)
174. Make grackle verbose only for rank 0 in MPI runs (details)
175. (bugfix) Do not set h-depth before applying min and max h (details)
176. Change the code version number to 2025.01 (details)
177. Do not reset the delta times for snapshot triggers upon restarting the code (details)
178. Formatted (finally) (details)
179. Updated the doxygen configuration file (details)
180. First few fixes from doxygen report (details)
181. Fixed a bunch more doxygen warnings (details)
182. Add sink debugging snapshot for the HomogeneousBox example (details)
183. dynamical friction in the MW2014 potential (details)
184. Swap order of evaluation of debugging check in gravity loops (details)
185. Taskplot cleanup (details)
186. Applied code formatting tool (details)
187. Revaz/dev : update plotting script (details)
188. Fix link to grackle cooling table (details)
189. some fix and improvement of the MW2014 dynamical friction (details)
190. Add missing accretion efficiency io field (details)
191. Sink bug fix for h_max (details)
192. Upgraded neighbour finding matching the COLIBRE fork (details)
193. Fix the unit tests to use the new interaction function signature. Backport from COLIBRE fork. (details)
194. Use  the threadpool in a few more functions (details)
195. Allow FOF to run on a restart step by first reallocating the scheduler memory. (details)
196. tiny improvements (details)
197. GEAR: Fix improper handling of IMF transition in star_population_continuous_IMF (details)
198. Applied code formatting script (details)
199. GEAR sink: Small fixes (details)
200. Add direct lustre api calls (details)
201. Spelling corrections (details)
202. Minor rt fixes (details)
203. Catching the zoom branch up with master (details)
204. Improve ./configure script to fix macOS function detection issues (details)
205. Applied formatting script (details)
206. Small addition to SB example VR config file, without which VR does not run on... (details)
207. Add new examples from REMIX paper and remove duplicate Planetary hydro tests (details)
208. REMIX hydro scheme (details)
209. Fix GEAR sink number of outputs (details)
210. Gear feedback updates (details)
211. Add new planetary equations of state and EoS functions (details)
212. Remove the deleted testEOS.sh from list of necessary files (details)
213. Clarify FoF select-output docs (details)
214. Synch spin jet code with downstream (details)
215. Move SWIFT's intrinsics.h to swift_intrinsics.h to avoid clash with Cray's own intrinsics.h (details)
216. Small fixes to let high res SB cluster example run out of the box (details)
217. Formatting (details)
218. Fixes and improvements to h_max_active (details)
219. GEAR documentation improvement (details)
220. Fixing downloads from swift_webstorage (details)
221. Fixing restarting in a zoom run (details)
222. Applied python formatting script (details)
223. Fix typo in stats gathering in the tools.c reported by Mladen (details)
224. Only subtasks (details)
225. Applied code formatting tool (details)
226. Fixing 125 text conflict issue (details)
227. Memory-lean implementation of FOF (details)
228. REMIX docs (details)
229. Slimming down of foreign gpart + reduced comm size (details)
230. Applied formatting script (details)
231. Fix missing version number changes (details)
232. Add missing files to the IsolatedGalaxy_starformation example (details)
233. Zoom: fixing interactions and buffer cells (details)
234. added vim and linter dotfiles to gitignore (details)
235. fix invalid escape sequence warnings in python files for documentation (details)
236. fix typo in the freeing of arrays in write_output_serial reported by @dc-proc1 in \!2151 (details)
237. Fix math typo in space_remap_ids() reported by @dc-proc1 in \!2151 (details)
238. add missing hardcoded task types in swift_hardcoded_data.py (details)
239. Jet comparison project - Equation of state (details)
240. Update empty docs (details)
241. Ensuring void task splitting is always symmetric + eighty-sixing buffer cells (details)
242. Fixing find replace typo in task_below_diff_grav_dpeth (details)
243. Removing buffer cells from cell_getID test (details)
244. Fix rounding error bug in calculation of number of top-level cells (details)
245. Calculate radii for FOF groups (details)
246. Tidy backronym (details)
247. fix sink timers (details)
248. Zoom: Applying fixes for running with EAGLE/hydro (details)
249. Zoom: Fixing empty top level zoom cell bug (details)
250. Zoom: Updating zoom test to account for NULL void progeny (details)
251. Accounting for differing softening lengths in exact gravity calculation and particle selection (details)
252. Removed the defunct 'anarchy-du' option alias for SPHENIX SPH (details)
253. Zoom: implementing some I/O helpers for zoom outputs (details)
254. Applied code formatting tool (details)
255. Fix theory py scripts (details)
256. Fix plotting script in the small cosmo volume example (details)
257. Zoom: Recentering during regridding (details)
258. GEAR: Make Gizmo MFV and MFM compatible with sinks and SF (details)
259. Modularize Stellar Feedback in GEAR for Pre-Supernova Prescriptions (details)
260. Prepare task MPI Interface for Sink Particles (details)
261. Fix swift with csds compilation (details)
262. Modularise GEAR feedback modules to reduce code duplication with mechanical feedback (details)
263. Appied python formatting code (details)
264. Fix GEAR stars compilation with feedback=none (details)
265. Fixes to hydrostatic halo parameter file to run with latest code (details)
266. Add extra fof properties (details)
267. Fix code formatting (details)
268. Upgraded the clang formatting tool to version 20.0 (details)
269. Work around feature in clang-format/20.1.0 (details)
270. Correction in GEAR Feddback (details)
271. CSDS documentation improvements (details)
272. Add check for stand alone FOF (details)
273. Applied code formatting tool (details)
274. Update the version number after the October 2025 updates (details)
275. Being explicit about pointer placement in formatting (details)
276. Applying right pointer justification (details)
277. Zoom: Fixing region init args in test suite (details)
278. Ran the formatter (details)
279. Fix incorrect includes. (details)
280. Make sure the configuration header is included in the main zoom header (details)
281. Zoom: Removing unnecessary pair tasks (details)
282. Handling some zoom cell geometry edge cases (details)

Update the X-ray tables to their newest version

Fix a bug when running with multiple non-degenerate neutrino species

Resolve "--enable-timers causes compilation error on master"

Post merge spin jet fix

Code formatting

Convert printf to errors in the X-ray extra i/o

Making it official

GEARRT cosmological thermochemistry

GEAR-RT redshifting photons

Fix to get swiftsimio to read the SFR logger with the EAGLE model switched on

Fix compilation of the power spectrum code in the absence of FFTW

Fix computation of the potential energy in the isothermal potential case

Fix io for a jet-related tracer

Fix jet tracer variable type

Fix MPI type mistakes reported by oneAPI

Add missing -fopenmp for csds writer compilation in Swift

Fix -Wadress warning

Changed -fopenmp --> $OPENMP_CFLAGS in configure.ac

Update reference to paper in the RTD

Sink : bugs fixing

Add the necessary sink-related initialisations in the unit tests

Update spin/jet RTD

possible fix to the FOF in hydro runs

Added missing include in the general swift.h

Cleaner separation between sink.h and sink_iact.h

Add missing file

Grackle cooling primordial abundances

Add missing include now that the sink_iact.h has been split off from sink.h

Applied formatting scripts

Add information to the output list about size of the arrays

Fix warning reported by GCC-14

Fix Grackle cooling MULTI_COOL error with metal

Rename space_getsid to space_getsid_and_swap_cells() to try to prevent mistakes where wrong cell pointers collected before the call are reused after the swapping has happened. The new name may alleviate part of this

Add free parameter (normalisation) to variable accretion efficiency scaling

Fix to the recording triggers. Coming from COLIBRE downstream fork.

Add more info to the output field file. Comping from downstream fork.

Call particle_splitting_update_binary_tree with the correct argument order

Another master->zoom_merge update

Sink homogeneous box example

Code formatting

Code formatting

Add a DMantissa21 filter and update the documentation to warn about the...

Separating zoom and background `space_subdepth_diff_grav` treatments

Fix incorrect base type in DMantissa21 filter

Downstream fix to the LOS code which could overflow the parser parameter list size in the middle of a run. A check is now in place at the start

Add missing BH output fields to spin-jet code

Fixing some zoom issues/bugs

Splitting mesh threadpools to improve performance

Sink Homogeneous box IC : Give the correct velocity array size

Applied formatting script

ignore the feedback of stars with a negative birth_scale_factor or birth_time

Resolve "GEAR stars : update stars_compute_timestep"

IsolatedGalaxy_pNbody

Augment the i/o meta-data to inform whether fields are stored in physical and if so, whether they can be converted back to comoving

Update planetary examples and initial conditions hdf5 field names

GEAR stars : fix negative initial metallicity

Change the clang formatting version number from 13 to 18.

Add missing commas to GEAR SF IO

Applied updated formatting script

Switch the arguments of the calloc calls in engine_resitribute.c to make GCC 14.1 happier. This has no consequences

Fix another instance of calloc call with flipped arguments according to GCC 14.1

Fix yet another typo...

Fix print formats

GEAR sink: Add io outputs

Fixes for GCC 14 toolchain on COSMA

Sink : chemistry interface improvements

Temporarily disable the voronoi 2D unit test

Formatting for llvm/18.1.8 on COSMA

Sink : Update functions documentation

Fix unitialised structure member in unit test

Sink : hide GEAR details into its module

Impose a minimum hdf5 API version of 1.8 to handle all our compression schemes

Fix typo in serial_io.c

Code formatting

Fixes for Intel 2024 toolchain

Remove unused variable

Need extra bin in histogram (sanitizer report)

Fix leaks reported by the sanitizer (stops non-zero exit when checking)

Don't clean cache when not used

Skip when not in a git repo

Previously this must have failed silently as the current clang-format doesn't like -i and no files in a terminal, was probably OK in a non-interactive environment

Allow rounding in the conversion to double and back

Only an issue with GCC 14.1 so far