Modified the VR config files of the EAGLE IC examples to use the new...

Modified the VR config files of the EAGLE IC examples to use the new recommended value of the core phase-siginificance parameter

examples/EAGLE_ICs/EAGLE_100/vrconfig_3dfof_subhalos_SO_hydro.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
 
@@ -26,6 +26,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -39,8 +40,8 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-#1 / 0.012
-Metallicity_to_solarmetallicity=83.33
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
 Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
@@ -112,7 +113,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +135,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -166,6 +168,23 @@ Iterate_cm_flag=0 #do not interate to determine centre-of-mass
 Sort_by_binding_energy=1 #sort particles by binding energy
 Reference_frame_for_properties=2 #use the minimum potential as reference frame about which to calculate properties 
 
+################################
+#Extra fields
+################################
+
+# Also compute the H abundance as well as the HI, HII and H_2 fractions
+Gas_internal_property_names=ElementMassFractions,SpeciesFractions,SpeciesFractions,SpeciesFractions,
+Gas_internal_property_index_in_file=0,0,1,2,
+Gas_internal_property_input_output_unit_conversion_factors=1.0,1.0,1.0,1.0
+Gas_internal_property_calculation_type =averagemassweighted,averagemassweighted,averagemassweighted,averagemassweighted,
+Gas_internal_property_output_units=unitless,unitless,unitless,unitless,
+
+# Collect the BH subgrid masses and compute the max, min, average and total mass in apertures
+BH_internal_property_names=SubgridMasses,SubgridMasses,SubgridMasses,SubgridMasses,
+BH_internal_property_input_output_unit_conversion_factors=1.0e10,1.0e10,1.0e10,1.0e10,
+BH_internal_property_calculation_type=max,min,average,aperture_total,
+BH_internal_property_output_units=solar_mass,solar_mass,solar_mass,solar_mass,
+
 ################################
 #output related
 ################################
@@ -186,6 +205,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox

examples/EAGLE_ICs/EAGLE_12/vrconfig_3dfof_subhalos_SO_hydro.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
 
@@ -26,6 +26,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -39,8 +40,8 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-#1 / 0.012
-Metallicity_to_solarmetallicity=83.33
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
 Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
@@ -112,7 +113,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +135,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -203,6 +205,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox

examples/EAGLE_ICs/EAGLE_25/vrconfig_3dfof_subhalos_SO_hydro.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
 
@@ -26,6 +26,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -39,8 +40,8 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-#1 / 0.012
-Metallicity_to_solarmetallicity=83.33
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
 Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
@@ -112,7 +113,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +135,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -203,6 +205,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox

examples/EAGLE_ICs/EAGLE_50/vrconfig_3dfof_subhalos_SO_hydro.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
 
@@ -26,6 +26,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -39,8 +40,8 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-#1 / 0.012
-Metallicity_to_solarmetallicity=83.33
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
 Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
@@ -112,7 +113,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +135,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -203,6 +205,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox

examples/EAGLE_ICs/EAGLE_6/vrconfig_3dfof_subhalos_SO_hydro.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
 
@@ -26,6 +26,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -39,8 +40,8 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-#1 / 0.012
-Metallicity_to_solarmetallicity=83.33
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
 Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
@@ -112,7 +113,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +135,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -203,6 +205,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox