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Implement logger writer

Loic Hausammann requested to merge logger_api1 into master

In this merge request, I am changing the API for the writer in order to be more flexible.

In the file src/cell.c, I am also writing the particles that leaves the box and are removed from the simulation.

I propose to review it in two steps if it is a bit too large for you. We can first take a look at logger.c and any of the scheme dependent files (e.g. hydro/Gadget2/hydro_logger.h) and then the impact on the other files.

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