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Commit ab0d8892 authored by James Willis's avatar James Willis
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Created a new main that only runs a FOF before exiting.

parent d2026774
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1 merge request!543Fof
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View file @ ab0d8892
......@@ -24,6 +24,8 @@ doc/Doxyfile
examples/swift
examples/swift_mpi
examples/fof
examples/fof_mpi
examples/*/*.xmf
examples/*/*.h5
examples/*/*.png
......
examples/Makefile.am
+ 13
− 0
View file @ ab0d8892
......@@ -33,9 +33,12 @@ MPI_FLAGS = -DWITH_MPI $(PARMETIS_INCS) $(METIS_INCS)
# Programs.
bin_PROGRAMS = swift
bin_PROGRAMS += fof
# Build MPI versions as well?
if HAVEMPI
bin_PROGRAMS += swift_mpi
bin_PROGRAMS += fof_mpi
endif
# engine_policy_setaffinity is available?
......@@ -55,6 +58,16 @@ swift_mpi_SOURCES = main.c
swift_mpi_CFLAGS = $(MYFLAGS) $(AM_CFLAGS) $(MPI_FLAGS) -DENGINE_POLICY="engine_policy_keep $(ENGINE_POLICY_SETAFFINITY)"
swift_mpi_LDADD = ../src/.libs/libswiftsim_mpi.a $(MPI_LIBS) $(EXTRA_LIBS)
# Sources for fof
fof_SOURCES = main_fof.c
fof_CFLAGS = $(MYFLAGS) $(AM_CFLAGS) -DENGINE_POLICY="engine_policy_keep $(ENGINE_POLICY_SETAFFINITY)"
fof_LDADD = ../src/.libs/libswiftsim.a $(EXTRA_LIBS)
# Sources for fof_mpi, do we need an affinity policy for MPI?
fof_mpi_SOURCES = main_fof.c
fof_mpi_CFLAGS = $(MYFLAGS) $(AM_CFLAGS) $(MPI_FLAGS) -DENGINE_POLICY="engine_policy_keep $(ENGINE_POLICY_SETAFFINITY)"
fof_mpi_LDADD = ../src/.libs/libswiftsim_mpi.a $(MPI_LIBS) $(EXTRA_LIBS)
# Scripts to generate ICs
EXTRA_DIST = CoolingBox/coolingBox.yml CoolingBox/energy_plot.py CoolingBox/makeIC.py CoolingBox/run.sh \
ConstantCosmoVolume/run.sh ConstantCosmoVolume/makeIC.py ConstantCosmoVolume/plotSolution.py ConstantCosmoVolume/constant_volume.yml \
......
examples/main_fof.c 0 → 100644
+ 1023
− 0
View file @ ab0d8892
/*******************************************************************************
* This file is part of SWIFT.
* Copyright (c) 2012 Pedro Gonnet (pedro.gonnet@durham.ac.uk),
* Matthieu Schaller (matthieu.schaller@durham.ac.uk)
* 2015 Peter W. Draper (p.w.draper@durham.ac.uk)
* Angus Lepper (angus.lepper@ed.ac.uk)
* 2016 John A. Regan (john.a.regan@durham.ac.uk)
* Tom Theuns (tom.theuns@durham.ac.uk)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*
******************************************************************************/
/* Config parameters. */
#include "../config.h"
/* Some standard headers. */
#include <errno.h>
#include <fenv.h>
#include <libgen.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <sys/stat.h>
#include <unistd.h>
/* MPI headers. */
#ifdef WITH_MPI
#include <mpi.h>
#endif
/* Local headers. */
#include "swift.h"
/* Engine policy flags. */
#ifndef ENGINE_POLICY
#define ENGINE_POLICY engine_policy_none
#endif
/* Global profiler. */
struct profiler prof;
/**
* @brief Help messages for the command line parameters.
*/
void print_help_message(void) {
printf("\nUsage: swift [OPTION]... PARAMFILE\n");
printf(" swift_mpi [OPTION]... PARAMFILE\n\n");
printf("Valid options are:\n");
printf(" %2s %14s %s\n", "-a", "", "Pin runners using processor affinity.");
printf(" %2s %14s %s\n", "-c", "",
"Run with cosmological time integration.");
printf(" %2s %14s %s\n", "-C", "", "Run with cooling.");
printf(
" %2s %14s %s\n", "-d", "",
"Dry run. Read the parameter file, allocate memory but does not read ");
printf(
" %2s %14s %s\n", "", "",
"the particles from ICs and exit before the start of time integration.");
printf(" %2s %14s %s\n", "", "",
"Allows user to check validy of parameter and IC files as well as "
"memory limits.");
printf(" %2s %14s %s\n", "-D", "",
"Always drift all particles even the ones far from active particles. "
"This emulates");
printf(" %2s %14s %s\n", "", "",
"Gadget-[23] and GIZMO's default behaviours.");
printf(" %2s %14s %s\n", "-e", "",
"Enable floating-point exceptions (debugging mode).");
printf(" %2s %14s %s\n", "-f", "{int}",
"Overwrite the CPU frequency (Hz) to be used for time measurements.");
printf(" %2s %14s %s\n", "-g", "",
"Run with an external gravitational potential.");
printf(" %2s %14s %s\n", "-G", "", "Run with self-gravity.");
printf(" %2s %14s %s\n", "-M", "",
"Reconstruct the multipoles every time-step.");
printf(" %2s %14s %s\n", "-n", "{int}",
"Execute a fixed number of time steps. When unset use the time_end "
"parameter to stop.");
printf(" %2s %14s %s\n", "-o", "{str}",
"Generate a default output parameter file.");
printf(" %2s %14s %s\n", "-P", "{sec:par:val}",
"Set parameter value and overwrites values read from the parameters "
"file. Can be used more than once.");
printf(" %2s %14s %s\n", "-r", "", "Continue using restart files.");
printf(" %2s %14s %s\n", "-s", "", "Run with hydrodynamics.");
printf(" %2s %14s %s\n", "-S", "", "Run with stars.");
printf(" %2s %14s %s\n", "-b", "", "Run with stars feedback.");
printf(" %2s %14s %s\n", "-t", "{int}",
"The number of threads to use on each MPI rank. Defaults to 1 if not "
"specified.");
printf(" %2s %14s %s\n", "-T", "", "Print timers every time-step.");
printf(" %2s %14s %s\n", "-v", "[12]", "Increase the level of verbosity:");
printf(" %2s %14s %s\n", "", "", "1: MPI-rank 0 writes,");
printf(" %2s %14s %s\n", "", "", "2: All MPI-ranks write.");
printf(" %2s %14s %s\n", "-x", "", "Run with structure finding.");
printf(" %2s %14s %s\n", "-y", "{int}",
"Time-step frequency at which task graphs are dumped.");
printf(" %2s %14s %s\n", "-Y", "{int}",
"Time-step frequency at which threadpool tasks are dumped.");
printf(" %2s %14s %s\n", "-h", "", "Print this help message and exit.");
printf(
"\nSee the file parameter_example.yml for an example of "
"parameter file.\n");
}
/**
* @brief Main routine that loads a few particles and generates some output.
*
*/
int main(int argc, char *argv[]) {
struct clocks_time tic, toc;
struct engine e;
/* Structs used by the engine. Declare now to make sure these are always in
* scope. */
struct chemistry_global_data chemistry;
struct cooling_function_data cooling_func;
struct cosmology cosmo;
struct external_potential potential;
struct pm_mesh mesh;
struct gpart *gparts = NULL;
struct gravity_props gravity_properties;
struct hydro_props hydro_properties;
struct stars_props stars_properties;
struct part *parts = NULL;
struct phys_const prog_const;
struct sourceterms sourceterms;
struct space s;
struct spart *sparts = NULL;
struct unit_system us;
int nr_nodes = 1, myrank = 0;
#ifdef WITH_MPI
/* Start by initializing MPI. */
int res = 0, prov = 0;
if ((res = MPI_Init_thread(&argc, &argv, MPI_THREAD_MULTIPLE, &prov)) !=
MPI_SUCCESS)
error("Call to MPI_Init failed with error %i.", res);
if (prov != MPI_THREAD_MULTIPLE)
error(
"MPI does not provide the level of threading"
" required (MPI_THREAD_MULTIPLE).");
if ((res = MPI_Comm_size(MPI_COMM_WORLD, &nr_nodes)) != MPI_SUCCESS)
error("MPI_Comm_size failed with error %i.", res);
if ((res = MPI_Comm_rank(MPI_COMM_WORLD, &myrank)) != MPI_SUCCESS)
error("Call to MPI_Comm_rank failed with error %i.", res);
/* Make sure messages are stamped with the correct rank. */
engine_rank = myrank;
if ((res = MPI_Comm_set_errhandler(MPI_COMM_WORLD, MPI_ERRORS_RETURN)) !=
MPI_SUCCESS)
error("Call to MPI_Comm_set_errhandler failed with error %i.", res);
if (myrank == 0)
printf("[0000] [00000.0] main: MPI is up and running with %i node(s).\n\n",
nr_nodes);
if (nr_nodes == 1) {
message("WARNING: you are running with one MPI rank.");
message("WARNING: you should use the non-MPI version of this program.");
}
fflush(stdout);
#endif
/* Welcome to SWIFT, you made the right choice */
if (myrank == 0) greetings();
int with_aff = 0;
int dry_run = 0;
int dump_tasks = 0;
int dump_threadpool = 0;
int nsteps = -2;
int restart = 0;
int with_cosmology = 0;
int with_external_gravity = 0;
int with_sourceterms = 0;
int with_cooling = 0;
int with_self_gravity = 0;
int with_hydro = 0;
int with_stars = 0;
int with_fof = 0;
int with_feedback = 0;
int with_fp_exceptions = 0;
int with_drift_all = 0;
int with_mpole_reconstruction = 0;
int with_structure_finding = 0;
int verbose = 0;
int nr_threads = 1;
int with_verbose_timers = 0;
int nparams = 0;
char output_parameters_filename[200] = "";
char *cmdparams[PARSER_MAX_NO_OF_PARAMS];
char paramFileName[200] = "";
char restart_file[200] = "";
unsigned long long cpufreq = 0;
/* Parse the parameters */
int c;
while ((c = getopt(argc, argv, "abcCdDef:FgGhMn:o:P:rsSt:Tuv:xy:Y:")) != -1)
switch (c) {
case 'a':
#if defined(HAVE_SETAFFINITY) && defined(HAVE_LIBNUMA)
with_aff = 1;
#else
error("Need NUMA support for thread affinity");
#endif
break;
case 'b':
with_feedback = 1;
break;
case 'c':
with_cosmology = 1;
break;
case 'C':
with_cooling = 1;
break;
case 'd':
dry_run = 1;
break;
case 'D':
with_drift_all = 1;
break;
case 'e':
#ifdef HAVE_FE_ENABLE_EXCEPT
with_fp_exceptions = 1;
#else
error("Need support for floating point exception on this platform");
#endif
break;
case 'f':
if (sscanf(optarg, "%llu", &cpufreq) != 1) {
if (myrank == 0) printf("Error parsing CPU frequency (-f).\n");
if (myrank == 0) print_help_message();
return 1;
}
break;
case 'F':
with_sourceterms = 1;
break;
case 'g':
with_external_gravity = 1;
break;
case 'G':
with_self_gravity = 1;
break;
case 'h':
if (myrank == 0) print_help_message();
return 0;
case 'M':
with_mpole_reconstruction = 1;
break;
case 'n':
if (sscanf(optarg, "%d", &nsteps) != 1) {
if (myrank == 0) printf("Error parsing fixed number of steps.\n");
if (myrank == 0) print_help_message();
return 1;
}
break;
case 'o':
if (sscanf(optarg, "%s", output_parameters_filename) != 1) {
if (myrank == 0) {
printf("Error parsing output fields filename");
print_help_message();
}
return 1;
}
break;
case 'P':
cmdparams[nparams] = optarg;
nparams++;
break;
case 'r':
restart = 1;
break;
case 's':
with_hydro = 1;
break;
case 'S':
with_stars = 1;
break;
case 't':
if (sscanf(optarg, "%d", &nr_threads) != 1) {
if (myrank == 0)
printf("Error parsing the number of threads (-t).\n");
if (myrank == 0) print_help_message();
return 1;
}
break;
case 'T':
with_verbose_timers = 1;
break;
case 'u':
with_fof = 1;
break;
case 'v':
if (sscanf(optarg, "%d", &verbose) != 1) {
if (myrank == 0) printf("Error parsing verbosity level (-v).\n");
if (myrank == 0) print_help_message();
return 1;
}
break;
case 'x':
#ifdef HAVE_VELOCIRAPTOR
with_structure_finding = 1;
#else
error(
"Error: (-x) needs to have the code compiled with VELOCIraptor "
"linked in.");
#endif
break;
case 'y':
if (sscanf(optarg, "%d", &dump_tasks) != 1) {
if (myrank == 0) printf("Error parsing dump_tasks (-y). \n");
if (myrank == 0) print_help_message();
return 1;
}
#ifndef SWIFT_DEBUG_TASKS
if (dump_tasks) {
error(
"Task dumping is only possible if SWIFT was configured with the "
"--enable-task-debugging option.");
}
#endif
break;
case 'Y':
if (sscanf(optarg, "%d", &dump_threadpool) != 1) {
if (myrank == 0) printf("Error parsing dump_threadpool (-Y). \n");
if (myrank == 0) print_help_message();
return 1;
}
#ifndef SWIFT_DEBUG_THREADPOOL
if (dump_threadpool) {
error(
"Threadpool dumping is only possible if SWIFT was configured "
"with the "
"--enable-threadpool-debugging option.");
}
#endif
break;
case '?':
if (myrank == 0) print_help_message();
return 1;
break;
}
/* Write output parameter file */
if (myrank == 0 && strcmp(output_parameters_filename, "") != 0) {
io_write_output_field_parameter(output_parameters_filename);
printf("End of run.\n");
return 0;
}
/* check inputs */
if (optind == argc - 1) {
if (!strcpy(paramFileName, argv[optind++]))
error("Error reading parameter file name.");
} else if (optind > argc - 1) {
if (myrank == 0) printf("Error: A parameter file name must be provided\n");
if (myrank == 0) print_help_message();
return 1;
} else {
if (myrank == 0) printf("Error: Too many parameters given\n");
if (myrank == 0) print_help_message();
return 1;
}
if (!with_self_gravity && !with_hydro && !with_external_gravity) {
if (myrank == 0)
printf("Error: At least one of -s, -g or -G must be chosen.\n");
if (myrank == 0) print_help_message();
return 1;
}
if (with_stars && !with_external_gravity && !with_self_gravity) {
if (myrank == 0)
printf(
"Error: Cannot process stars without gravity, -g or -G must be "
"chosen.\n");
if (myrank == 0) print_help_message();
return 1;
}
if (with_fof && !with_external_gravity && !with_self_gravity) {
if (myrank == 0)
printf(
"Error: Cannot perform FOF search without gravity, -g or -G must be "
"chosen.\n");
if (myrank == 0) print_help_message();
return 1;
}
if (!with_stars && with_feedback) {
if (myrank == 0)
printf(
"Error: Cannot process feedback without stars, -S must be "
"chosen.\n");
if (myrank == 0) print_help_message();
return 1;
}
/* Let's pin the main thread, now we know if affinity will be used. */
#if defined(HAVE_SETAFFINITY) && defined(HAVE_LIBNUMA) && defined(_GNU_SOURCE)
if (with_aff &&
((ENGINE_POLICY)&engine_policy_setaffinity) == engine_policy_setaffinity)
engine_pin();
#endif
/* Genesis 1.1: And then, there was time ! */
clocks_set_cpufreq(cpufreq);
/* How vocal are we ? */
const int talking = (verbose == 1 && myrank == 0) || (verbose == 2);
if (myrank == 0 && dry_run)
message(
"Executing a dry run. No i/o or time integration will be performed.");
/* Report CPU frequency.*/
cpufreq = clocks_get_cpufreq();
if (myrank == 0) {
message("CPU frequency used for tick conversion: %llu Hz", cpufreq);
}
/* Report host name(s). */
#ifdef WITH_MPI
if (talking) {
message("Rank %d running on: %s", myrank, hostname());
}
#else
message("Running on: %s", hostname());
#endif
/* Do we have debugging checks ? */
#ifdef SWIFT_DEBUG_CHECKS
if (myrank == 0)
message("WARNING: Debugging checks activated. Code will be slower !");
#endif
/* Do we have debugging checks ? */
#ifdef SWIFT_USE_NAIVE_INTERACTIONS
if (myrank == 0)
message(
"WARNING: Naive cell interactions activated. Code will be slower !");
#endif
/* Do we have gravity accuracy checks ? */
#ifdef SWIFT_GRAVITY_FORCE_CHECKS
if (myrank == 0)
message(
"WARNING: Checking 1/%d of all gpart for gravity accuracy. Code will "
"be slower !",
SWIFT_GRAVITY_FORCE_CHECKS);
#endif
/* Do we choke on FP-exceptions ? */
if (with_fp_exceptions) {
#ifdef HAVE_FE_ENABLE_EXCEPT
feenableexcept(FE_DIVBYZERO | FE_INVALID | FE_OVERFLOW);
#endif
if (myrank == 0)
message("WARNING: Floating point exceptions will be reported.");
}
/* Do we have slow barriers? */
#ifndef HAVE_PTHREAD_BARRIERS
if (myrank == 0)
message("WARNING: Non-optimal thread barriers are being used.");
#endif
/* How large are the parts? */
if (myrank == 0) {
message("sizeof(part) is %4zi bytes.", sizeof(struct part));
message("sizeof(xpart) is %4zi bytes.", sizeof(struct xpart));
message("sizeof(spart) is %4zi bytes.", sizeof(struct spart));
message("sizeof(gpart) is %4zi bytes.", sizeof(struct gpart));
message("sizeof(multipole) is %4zi bytes.", sizeof(struct multipole));
message("sizeof(grav_tensor) is %4zi bytes.", sizeof(struct grav_tensor));
message("sizeof(task) is %4zi bytes.", sizeof(struct task));
message("sizeof(cell) is %4zi bytes.", sizeof(struct cell));
}
/* Read the parameter file */
struct swift_params *params =
(struct swift_params *)malloc(sizeof(struct swift_params));
if (params == NULL) error("Error allocating memory for the parameter file.");
if (myrank == 0) {
message("Reading runtime parameters from file '%s'", paramFileName);
parser_read_file(paramFileName, params);
/* Handle any command-line overrides. */
if (nparams > 0) {
message(
"Overwriting values read from the YAML file with command-line "
"values.");
for (int k = 0; k < nparams; k++) parser_set_param(params, cmdparams[k]);
}
}
#ifdef WITH_MPI
/* Broadcast the parameter file */
MPI_Bcast(params, sizeof(struct swift_params), MPI_BYTE, 0, MPI_COMM_WORLD);
#endif
/* Temporary early aborts for modes not supported over MPI. */
#ifdef WITH_MPI
if (with_mpole_reconstruction && nr_nodes > 1)
error("Cannot reconstruct m-poles every step over MPI (yet).");
#endif
#ifdef WITH_MPI
if (with_feedback) error("Can't run with feedback over MPI (yet).");
#endif
#if defined(WITH_MPI) && defined(HAVE_VELOCIRAPTOR)
if (with_structure_finding && nr_nodes > 1)
error("VEOCIraptor not yet enabled over MPI.");
#endif
/* Check that we can write the snapshots by testing if the output
* directory exists and is searchable and writable. */
char basename[PARSER_MAX_LINE_SIZE];
parser_get_param_string(params, "Snapshots:basename", basename);
const char *dirp = dirname(basename);
if (access(dirp, W_OK | X_OK) != 0) {
error("Cannot write snapshots in directory %s (%s)", dirp, strerror(errno));
}
/* Check that we can write the structure finding catalogues by testing if the
* output
* directory exists and is searchable and writable. */
if (with_structure_finding) {
char stfbasename[PARSER_MAX_LINE_SIZE];
parser_get_param_string(params, "StructureFinding:basename", stfbasename);
const char *stfdirp = dirname(stfbasename);
if (access(stfdirp, W_OK | X_OK) != 0) {
error("Cannot write stf catalogues in directory %s (%s)", stfdirp,
strerror(errno));
}
}
/* Prepare the domain decomposition scheme */
struct repartition reparttype;
#ifdef WITH_MPI
struct partition initial_partition;
partition_init(&initial_partition, &reparttype, params, nr_nodes);
/* Let's report what we did */
if (myrank == 0) {
#if defined(HAVE_PARMETIS)
if (reparttype.usemetis)
message("Using METIS serial partitioning:");
else
message("Using ParMETIS partitioning:");
#else
message("Using METIS serial partitioning:");
#endif
message(" initial partitioning: %s",
initial_partition_name[initial_partition.type]);
if (initial_partition.type == INITPART_GRID)
message(" grid set to [ %i %i %i ].", initial_partition.grid[0],
initial_partition.grid[1], initial_partition.grid[2]);
message(" repartitioning: %s", repartition_name[reparttype.type]);
}
#endif
/* Common variables for restart and IC sections. */
int clean_smoothing_length_values = 0;
int flag_entropy_ICs = 0;
/* Work out where we will read and write restart files. */
char restart_dir[PARSER_MAX_LINE_SIZE];
parser_get_opt_param_string(params, "Restarts:subdir", restart_dir,
"restart");
/* The directory must exist. */
if (myrank == 0) {
if (access(restart_dir, W_OK | X_OK) != 0) {
if (restart) {
error("Cannot restart as no restart subdirectory: %s (%s)", restart_dir,
strerror(errno));
} else {
if (mkdir(restart_dir, 0777) != 0)
error("Failed to create restart directory: %s (%s)", restart_dir,
strerror(errno));
}
}
}
/* Basename for any restart files. */
char restart_name[PARSER_MAX_LINE_SIZE];
parser_get_opt_param_string(params, "Restarts:basename", restart_name,
"swift");
/* If restarting, look for the restart files. */
if (restart) {
/* Attempting a restart. */
char **restart_files = NULL;
int restart_nfiles = 0;
if (myrank == 0) {
message("Restarting SWIFT");
/* Locate the restart files. */
restart_files =
restart_locate(restart_dir, restart_name, &restart_nfiles);
if (restart_nfiles == 0)
error("Failed to locate any restart files in %s", restart_dir);
/* We need one file per rank. */
if (restart_nfiles != nr_nodes)
error("Incorrect number of restart files, expected %d found %d",
nr_nodes, restart_nfiles);
if (verbose > 0)
for (int i = 0; i < restart_nfiles; i++)
message("found restart file: %s", restart_files[i]);
}
#ifdef WITH_MPI
/* Distribute the restart files, need one for each rank. */
if (myrank == 0) {
for (int i = 1; i < nr_nodes; i++) {
strcpy(restart_file, restart_files[i]);
MPI_Send(restart_file, 200, MPI_BYTE, i, 0, MPI_COMM_WORLD);
}
/* Keep local file. */
strcpy(restart_file, restart_files[0]);
/* Finished with the list. */
restart_locate_free(restart_nfiles, restart_files);
} else {
MPI_Recv(restart_file, 200, MPI_BYTE, 0, 0, MPI_COMM_WORLD,
MPI_STATUS_IGNORE);
}
if (verbose > 1) message("local restart file = %s", restart_file);
#else
/* Just one restart file. */
strcpy(restart_file, restart_files[0]);
#endif
/* Now read it. */
restart_read(&e, restart_file);
/* And initialize the engine with the space and policies. */
if (myrank == 0) clocks_gettime(&tic);
engine_config(1, &e, params, nr_nodes, myrank, nr_threads, with_aff,
talking, restart_file);
if (myrank == 0) {
clocks_gettime(&toc);
message("engine_config took %.3f %s.", clocks_diff(&tic, &toc),
clocks_getunit());
fflush(stdout);
}
/* Check if we are already done when given steps on the command-line. */
if (e.step >= nsteps && nsteps > 0)
error("Not restarting, already completed %d steps", e.step);
} else {
/* Not restarting so look for the ICs. */
/* Initialize unit system and constants */
units_init_from_params(&us, params, "InternalUnitSystem");
phys_const_init(&us, params, &prog_const);
if (myrank == 0) {
message("Internal unit system: U_M = %e g.", us.UnitMass_in_cgs);
message("Internal unit system: U_L = %e cm.", us.UnitLength_in_cgs);
message("Internal unit system: U_t = %e s.", us.UnitTime_in_cgs);
message("Internal unit system: U_I = %e A.", us.UnitCurrent_in_cgs);
message("Internal unit system: U_T = %e K.", us.UnitTemperature_in_cgs);
phys_const_print(&prog_const);
}
/* Initialise the cosmology */
if (with_cosmology)
cosmology_init(params, &us, &prog_const, &cosmo);
else
cosmology_init_no_cosmo(&cosmo);
if (myrank == 0 && with_cosmology) cosmology_print(&cosmo);
/* Initialise the hydro properties */
if (with_hydro)
hydro_props_init(&hydro_properties, &prog_const, &us, params);
else
bzero(&hydro_properties, sizeof(struct hydro_props));
/* Initialise the equation of state */
if (with_hydro)
eos_init(&eos, &prog_const, &us, params);
else
bzero(&eos, sizeof(struct eos_parameters));
/* Initialise the stars properties */
if (with_stars)
stars_props_init(&stars_properties, &prog_const, &us, params,
&hydro_properties);
else
bzero(&stars_properties, sizeof(struct stars_props));
/* Initialise the gravity properties */
if (with_self_gravity)
gravity_props_init(&gravity_properties, params, &cosmo, with_cosmology);
else
bzero(&gravity_properties, sizeof(struct gravity_props));
/* Read particles and space information from (GADGET) ICs */
char ICfileName[200] = "";
parser_get_param_string(params, "InitialConditions:file_name", ICfileName);
const int replicate =
parser_get_opt_param_int(params, "InitialConditions:replicate", 1);
clean_smoothing_length_values = parser_get_opt_param_int(
params, "InitialConditions:cleanup_smoothing_lengths", 0);
const int cleanup_h = parser_get_opt_param_int(
params, "InitialConditions:cleanup_h_factors", 0);
const int cleanup_sqrt_a = parser_get_opt_param_int(
params, "InitialConditions:cleanup_velocity_factors", 0);
const int generate_gas_in_ics = parser_get_opt_param_int(
params, "InitialConditions:generate_gas_in_ics", 0);
if (generate_gas_in_ics && flag_entropy_ICs)
error("Can't generate gas if the entropy flag is set in the ICs.");
if (generate_gas_in_ics && !with_cosmology)
error("Can't generate gas if the run is not cosmological.");
if (myrank == 0) message("Reading ICs from file '%s'", ICfileName);
if (myrank == 0 && cleanup_h)
message("Cleaning up h-factors (h=%f)", cosmo.h);
if (myrank == 0 && cleanup_sqrt_a)
message("Cleaning up a-factors from velocity (a=%f)", cosmo.a);
fflush(stdout);
/* Get ready to read particles of all kinds */
size_t Ngas = 0, Ngpart = 0, Nspart = 0;
double dim[3] = {0., 0., 0.};
int periodic = 0;
if (myrank == 0) clocks_gettime(&tic);
#if defined(HAVE_HDF5)
#if defined(WITH_MPI)
#if defined(HAVE_PARALLEL_HDF5)
read_ic_parallel(ICfileName, &us, dim, &parts, &gparts, &sparts, &Ngas,
&Ngpart, &Nspart, &periodic, &flag_entropy_ICs, with_hydro,
(with_external_gravity || with_self_gravity), with_stars,
cleanup_h, cleanup_sqrt_a, cosmo.h, cosmo.a, myrank,
nr_nodes, MPI_COMM_WORLD, MPI_INFO_NULL, nr_threads,
dry_run);
#else
read_ic_serial(ICfileName, &us, dim, &parts, &gparts, &sparts, &Ngas,
&Ngpart, &Nspart, &periodic, &flag_entropy_ICs, with_hydro,
(with_external_gravity || with_self_gravity), with_stars,
cleanup_h, cleanup_sqrt_a, cosmo.h, cosmo.a, myrank,
nr_nodes, MPI_COMM_WORLD, MPI_INFO_NULL, nr_threads,
dry_run);
#endif
#else
read_ic_single(ICfileName, &us, dim, &parts, &gparts, &sparts, &Ngas,
&Ngpart, &Nspart, &periodic, &flag_entropy_ICs, with_hydro,
(with_external_gravity || with_self_gravity), with_stars,
cleanup_h, cleanup_sqrt_a, cosmo.h, cosmo.a, nr_threads,
dry_run);
#endif
#endif
if (myrank == 0) {
clocks_gettime(&toc);
message("Reading initial conditions took %.3f %s.",
clocks_diff(&tic, &toc), clocks_getunit());
fflush(stdout);
}
#ifdef SWIFT_DEBUG_CHECKS
/* Check once and for all that we don't have unwanted links */
if (!with_stars && !dry_run) {
for (size_t k = 0; k < Ngpart; ++k)
if (gparts[k].type == swift_type_stars) error("Linking problem");
}
if (!with_hydro && !dry_run) {
for (size_t k = 0; k < Ngpart; ++k)
if (gparts[k].type == swift_type_gas) error("Linking problem");
}
/* Check that the other links are correctly set */
if (!dry_run)
part_verify_links(parts, gparts, sparts, Ngas, Ngpart, Nspart, 1);
#endif
/* Get the total number of particles across all nodes. */
long long N_total[3] = {0, 0, 0};
#if defined(WITH_MPI)
long long N_long[3] = {Ngas, Ngpart, Nspart};
MPI_Allreduce(&N_long, &N_total, 3, MPI_LONG_LONG_INT, MPI_SUM,
MPI_COMM_WORLD);
#else
N_total[0] = Ngas;
N_total[1] = Ngpart;
N_total[2] = Nspart;
#endif
if (myrank == 0)
message(
"Read %lld gas particles, %lld stars particles and %lld gparts from "
"the ICs.",
N_total[0], N_total[2], N_total[1]);
/* Verify that the fields to dump actually exist */
if (myrank == 0) io_check_output_fields(params, N_total);
/* Initialize the space with these data. */
if (myrank == 0) clocks_gettime(&tic);
space_init(&s, params, &cosmo, dim, parts, gparts, sparts, Ngas, Ngpart,
Nspart, periodic, replicate, generate_gas_in_ics, with_hydro,
with_self_gravity, talking, dry_run);
if (myrank == 0) {
clocks_gettime(&toc);
message("space_init took %.3f %s.", clocks_diff(&tic, &toc),
clocks_getunit());
fflush(stdout);
}
/* Initialise the long-range gravity mesh */
if (with_self_gravity && periodic) {
#ifdef HAVE_FFTW
pm_mesh_init(&mesh, &gravity_properties, s.dim, nr_threads);
#else
/* Need the FFTW library if periodic and self gravity. */
error(
"No FFTW library found. Cannot compute periodic long-range forces.");
#endif
} else {
pm_mesh_init_no_mesh(&mesh, s.dim);
}
/* Check that the matter content matches the cosmology given in the
* parameter file. */
if (with_cosmology && with_self_gravity && !dry_run)
space_check_cosmology(&s, &cosmo, myrank);
/* Also update the total counts (in case of changes due to replication) */
#if defined(WITH_MPI)
N_long[0] = s.nr_parts;
N_long[1] = s.nr_gparts;
N_long[2] = s.nr_sparts;
MPI_Allreduce(&N_long, &N_total, 3, MPI_LONG_LONG_INT, MPI_SUM,
MPI_COMM_WORLD);
#else
N_total[0] = s.nr_parts;
N_total[1] = s.nr_gparts;
N_total[2] = s.nr_sparts;
#endif
/* Say a few nice things about the space we just created. */
if (myrank == 0) {
message("space dimensions are [ %.3f %.3f %.3f ].", s.dim[0], s.dim[1],
s.dim[2]);
message("space %s periodic.", s.periodic ? "is" : "isn't");
message("highest-level cell dimensions are [ %i %i %i ].", s.cdim[0],
s.cdim[1], s.cdim[2]);
message("%zi parts in %i cells.", s.nr_parts, s.tot_cells);
message("%zi gparts in %i cells.", s.nr_gparts, s.tot_cells);
message("%zi sparts in %i cells.", s.nr_sparts, s.tot_cells);
message("maximum depth is %d.", s.maxdepth);
fflush(stdout);
}
/* Verify that each particle is in it's proper cell. */
if (talking && !dry_run) {
int icount = 0;
space_map_cells_pre(&s, 0, &map_cellcheck, &icount);
message("map_cellcheck picked up %i parts.", icount);
}
/* Verify the maximal depth of cells. */
if (talking && !dry_run) {
int data[2] = {s.maxdepth, 0};
space_map_cells_pre(&s, 0, &map_maxdepth, data);
message("nr of cells at depth %i is %i.", data[0], data[1]);
}
/* Initialise the external potential properties */
if (with_external_gravity)
potential_init(params, &prog_const, &us, &s, &potential);
if (myrank == 0) potential_print(&potential);
/* Initialise the cooling function properties */
if (with_cooling) cooling_init(params, &us, &prog_const, &cooling_func);
if (myrank == 0) cooling_print(&cooling_func);
/* Initialise the chemistry */
chemistry_init(params, &us, &prog_const, &chemistry);
if (myrank == 0) chemistry_print(&chemistry);
/* Initialise the feedback properties */
if (with_sourceterms) sourceterms_init(params, &us, &sourceterms);
if (with_sourceterms && myrank == 0) sourceterms_print(&sourceterms);
/* Construct the engine policy */
int engine_policies = ENGINE_POLICY | engine_policy_steal;
if (with_drift_all) engine_policies |= engine_policy_drift_all;
if (with_mpole_reconstruction)
engine_policies |= engine_policy_reconstruct_mpoles;
if (with_hydro) engine_policies |= engine_policy_hydro;
if (with_self_gravity) engine_policies |= engine_policy_self_gravity;
if (with_external_gravity)
engine_policies |= engine_policy_external_gravity;
if (with_cosmology) engine_policies |= engine_policy_cosmology;
if (with_cooling) engine_policies |= engine_policy_cooling;
if (with_sourceterms) engine_policies |= engine_policy_sourceterms;
if (with_stars) engine_policies |= engine_policy_stars;
if (with_fof) engine_policies |= engine_policy_fof;
if (with_feedback) engine_policies |= engine_policy_feedback;
if (with_structure_finding)
engine_policies |= engine_policy_structure_finding;
if (with_fof) engine_policies |= engine_policy_fof;
/* Initialize the engine with the space and policies. */
if (myrank == 0) clocks_gettime(&tic);
engine_init(&e, &s, params, N_total[0], N_total[1], N_total[2],
engine_policies, talking, &reparttype, &us, &prog_const, &cosmo,
&hydro_properties, &gravity_properties, &stars_properties,
&mesh, &potential, &cooling_func, &chemistry, &sourceterms);
engine_config(0, &e, params, nr_nodes, myrank, nr_threads, with_aff,
talking, restart_file);
/* Initialise the FOF parameters. */
fof_init(&s, N_total[0], N_total[1]);
if (myrank == 0) {
clocks_gettime(&toc);
message("engine_init took %.3f %s.", clocks_diff(&tic, &toc),
clocks_getunit());
fflush(stdout);
}
/* Get some info to the user. */
if (myrank == 0) {
long long N_DM = N_total[1] - N_total[2] - N_total[0];
message(
"Running on %lld gas particles, %lld stars particles and %lld DM "
"particles (%lld gravity particles)",
N_total[0], N_total[2], N_total[1] > 0 ? N_DM : 0, N_total[1]);
message(
"from t=%.3e until t=%.3e with %d ranks, %d threads / rank and %d "
"task queues / rank (dt_min=%.3e, dt_max=%.3e)...",
e.time_begin, e.time_end, nr_nodes, e.nr_threads, e.sched.nr_queues,
e.dt_min, e.dt_max);
fflush(stdout);
}
}
/* Time to say good-bye if this was not a serious run. */
if (dry_run) {
#ifdef WITH_MPI
if ((res = MPI_Finalize()) != MPI_SUCCESS)
error("call to MPI_Finalize failed with error %i.", res);
#endif
if (myrank == 0)
message("Time integration ready to start. End of dry-run.");
engine_clean(&e);
free(params);
return 0;
}
/* Initialise the table of Ewald corrections for the gravity checks */
#ifdef SWIFT_GRAVITY_FORCE_CHECKS
if (s.periodic) gravity_exact_force_ewald_init(e.s->dim[0]);
#endif
/* Init the runner history. */
#ifdef HIST
for (k = 0; k < runner_hist_N; k++) runner_hist_bins[k] = 0;
#endif
if (!restart) {
#ifdef WITH_MPI
/* Split the space. */
engine_split(&e, &initial_partition);
engine_redistribute(&e);
#endif
/* Initialise the particles */
engine_init_particles(&e, flag_entropy_ICs, clean_smoothing_length_values, 0);
/* Perform first FOF search after the first snapshot dump. */
fof_search_tree(&s);
#ifdef WITH_MPI
MPI_Barrier(MPI_COMM_WORLD);
#endif
}
/* used parameters */
parser_write_params_to_file(params, "used_parameters.yml", 1);
/* unused parameters */
parser_write_params_to_file(params, "unused_parameters.yml", 0);
/* Clean everything */
if (with_verbose_timers) timers_close_file();
if (with_cosmology) cosmology_clean(&cosmo);
if (with_self_gravity) pm_mesh_clean(&mesh);
engine_clean(&e);
free(params);
/* Say goodbye. */
if (myrank == 0) message("done. Bye.");
/* All is calm, all is bright. */
return 0;
}
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