Updated all the examples' YAML files to use the new periodic flag.

examples/SineWavePotential_1D/makeIC.py

@@ -74,10 +74,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 1
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/SineWavePotential_1D/sineWavePotential.yml

@@ -31,7 +31,8 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  sineWavePotential.hdf5       # The file to read
- 
+  periodic:   1
+  
 # External potential parameters
 SineWavePotential:
   amplitude: 10.

examples/SineWavePotential_2D/makeIC.py

@@ -70,10 +70,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 2
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/SineWavePotential_2D/sineWavePotential.yml

@@ -31,7 +31,8 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  sineWavePotential.hdf5       # The file to read
- 
+  periodic:   1
+  
 # External potential parameters
 SineWavePotential:
   amplitude: 10.

examples/SineWavePotential_3D/makeIC.py

@@ -81,10 +81,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 3
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/SineWavePotential_3D/sineWavePotential.yml

@@ -31,7 +31,8 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  sineWavePotential.hdf5       # The file to read
- 
+  periodic:   1
+  
 # External potential parameters
 SineWavePotential:
   amplitude: 10.

examples/SmallCosmoVolume/small_cosmo_volume.yml

@@ -52,7 +52,8 @@ Scheduler:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  small_cosmo_volume.hdf5
+  periodic:                    1
   cleanup_h_factors:           1    
   cleanup_velocity_factors:    1  
-  generate_gas_in_ics: 1            # Generate gas particles from the DM-only ICs
-  cleanup_smoothing_lengths: 1      # Since we generate gas, make use of the (expensive) cleaning-up procedure.
+  generate_gas_in_ics:         1      # Generate gas particles from the DM-only ICs
+  cleanup_smoothing_lengths:   1      # Since we generate gas, make use of the (expensive) cleaning-up procedure.

examples/SmallCosmoVolume_DM/small_cosmo_volume_dm.yml

@@ -53,5 +53,6 @@ Scheduler:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  small_cosmo_volume.hdf5
+  periodic:                    1
   cleanup_h_factors:           1    
   cleanup_velocity_factors:    1  

examples/SmallCosmoVolume_cooling/small_cosmo_volume.yml

@@ -52,10 +52,11 @@ Scheduler:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  small_cosmo_volume.hdf5
+  periodic:                    1
   cleanup_h_factors:           1    
   cleanup_velocity_factors:    1  
-  generate_gas_in_ics: 1            # Generate gas particles from the DM-only ICs
-  cleanup_smoothing_lengths: 1      # Since we generate gas, make use of the (expensive) cleaning-up procedure.
+  generate_gas_in_ics:         1    # Generate gas particles from the DM-only ICs
+  cleanup_smoothing_lengths:   1    # Since we generate gas, make use of the (expensive) cleaning-up procedure.
 
 # Constant lambda cooling function
 LambdaCooling:

examples/SmoothedMetallicity/makeIC.py

@@ -84,10 +84,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 3
 
-# Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 # Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/SmoothedMetallicity/smoothed_metallicity.yml

@@ -31,4 +31,5 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./smoothed_metallicity.hdf5          # The file to read
+  periodic:   1
 

examples/SodShockSpherical_2D/makeIC.py

@@ -100,10 +100,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 2
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/SodShockSpherical_2D/sodShock.yml

@@ -31,4 +31,5 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./sodShock.hdf5       # The file to read
+  periodic:   1
 

examples/SodShockSpherical_3D/makeIC.py

@@ -102,10 +102,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 3
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/SodShockSpherical_3D/sodShock.yml

@@ -32,4 +32,5 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./sodShock.hdf5       # The file to read
+  periodic:   1
 

examples/SodShock_1D/makeIC.py

@@ -92,10 +92,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 1
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/SodShock_1D/sodShock.yml

@@ -31,4 +31,4 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./sodShock.hdf5       # The file to read
-
+  periodic:   1

examples/SodShock_2D/makeIC.py

@@ -98,10 +98,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 2
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/SodShock_2D/sodShock.yml

@@ -31,4 +31,5 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./sodShock.hdf5       # The file to read
+  periodic:   1
 

examples/SodShock_3D/makeIC.py

@@ -98,10 +98,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 3
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.