Updated all the examples' YAML files to use the new periodic flag.

examples/GreshoVortex_2D/gresho.yml

@@ -34,3 +34,4 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./greshoVortex.hdf5     # The file to read
+  periodic:   1
\ No newline at end of file

examples/GreshoVortex_2D/makeIC.py

@@ -89,10 +89,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
 grp.attrs["Dimension"] = 2
 
-#Runtime parameters
-grp = fileOutput.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = fileOutput.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/GreshoVortex_3D/gresho.yml

@@ -35,3 +35,4 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./greshoVortex.hdf5     # The file to read
+  periodic:   1
\ No newline at end of file

examples/GreshoVortex_3D/makeIC.py

@@ -90,10 +90,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
 grp.attrs["Dimension"] = 3
 
-#Runtime parameters
-grp = fileOutput.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = fileOutput.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/HydrostaticHalo/hydrostatic.yml

@@ -31,7 +31,8 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  Hydrostatic.hdf5       # The file to read
- 
+  periodic:   1
+  
 # External potential parameters
 IsothermalPotential:
   vrot:            200.     # rotation speed of isothermal potential in internal units

examples/HydrostaticHalo/makeIC.py

@@ -91,10 +91,6 @@ grp.attrs["Unit current in cgs (U_I)"] = 1.
 grp.attrs["Unit temperature in cgs (U_T)"] = 1.
 
 
-# Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = periodic
-
 # set seed for random number
 np.random.seed(1234)
 

examples/InteractingBlastWaves_1D/interactingBlastWaves.yml

@@ -31,3 +31,4 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./interactingBlastWaves.hdf5          # The file to read
+  periodic:   1

examples/InteractingBlastWaves_1D/makeIC.py

@@ -62,10 +62,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = 0
 grp.attrs["Dimension"] = 1
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = file.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/IsothermalPotential/isothermal.yml

@@ -26,6 +26,7 @@ Snapshots:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  Isothermal.hdf5       # The file to read
+  periodic:   1
   shift:      [200.,200.,200.]      # Shift all particles to be in the potential
  
 # External potential parameters

examples/IsothermalPotential/makeIC.py

@@ -97,10 +97,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
 grp.attrs["Dimension"] = 3
 
-#Runtime parameters
-grp = file.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = periodic
-
 # set seed for random number
 numpy.random.seed(1234)
 

examples/KelvinHelmholtzGrowthRate_2D/kelvinHelmholtzGrowthRate.yml

@@ -31,3 +31,4 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./kelvinHelmholtzGrowthRate.hdf5     # The file to read
+  periodic:   1

examples/KelvinHelmholtzGrowthRate_2D/makeIC.py

@@ -76,10 +76,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
 grp.attrs["Dimension"] = 2
 
-#Runtime parameters
-grp = fileOutput.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = fileOutput.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/KelvinHelmholtzGrowthRate_2D/makeIC_regular.py

@@ -82,10 +82,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
 grp.attrs["Dimension"] = 2
 
-#Runtime parameters
-grp = fileOutput.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = fileOutput.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/KelvinHelmholtzGrowthRate_3D/kelvinHelmholtzGrowthRate.yml

@@ -32,3 +32,4 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./kelvinHelmholtzGrowthRate.hdf5     # The file to read
+  periodic:   1

examples/KelvinHelmholtzGrowthRate_3D/makeIC.py

@@ -76,10 +76,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
 grp.attrs["Dimension"] = 3
 
-#Runtime parameters
-grp = fileOutput.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = fileOutput.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/KelvinHelmholtzGrowthRate_3D/makeIC_regular.py

@@ -84,10 +84,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
 grp.attrs["Dimension"] = 3
 
-#Runtime parameters
-grp = fileOutput.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = fileOutput.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/KelvinHelmholtz_2D/kelvinHelmholtz.yml

@@ -31,3 +31,4 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  ./kelvinHelmholtz.hdf5     # The file to read
+  periodic:   1

examples/KelvinHelmholtz_2D/makeIC.py

@@ -122,10 +122,6 @@ grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
 grp.attrs["Flag_Entropy_ICs"] = [0, 0, 0, 0, 0, 0]
 grp.attrs["Dimension"] = 2
 
-#Runtime parameters
-grp = fileOutput.create_group("/RuntimePars")
-grp.attrs["PeriodicBoundariesOn"] = 1
-
 #Units
 grp = fileOutput.create_group("/Units")
 grp.attrs["Unit length in cgs (U_L)"] = 1.

examples/KeplerianRing/keplerian_ring.yml

@@ -32,7 +32,8 @@ SPH:
 # Parameters related to the initial conditions
 InitialConditions:
   file_name:  initial_conditions.hdf5        # The file to read
-
+  periodic:   1
+  
 # External potential parameters
 PointMassPotential:
   position:        [5.,5.,5.]  # location of external point mass in internal units

examples/MultiTypes/makeIC.py

@@ -93,10 +93,6 @@ for n in range(num_files):
     grp.attrs["MassTable"] = [0.0, massDM, 0.0, 0.0, 0.0, 0.0]
     grp.attrs["Flag_Entropy_ICs"] = 0
     grp.attrs["Dimension"] = 3
-
-    #Runtime parameters
-    grp = file.create_group("/RuntimePars")
-    grp.attrs["PeriodicBoundariesOn"] = periodic
     
     #Units
     grp = file.create_group("/Units")