added peerj template.

paper/wlpeerj.cls

+%
+% An unofficial LaTeX class for PeerJ articles.
+%
+% Created by writeLaTeX.
+%
+% Based on the SelfArx document class.
+%
+\NeedsTeXFormat{LaTeX2e}
+\ProvidesClass{wlpeerj}[23/01/2014, v1.0]
+\RequirePackage[utf8]{inputenc}
+\RequirePackage[english]{babel}
+
+\RequirePackage{ifthen}
+\RequirePackage{calc}
+\AtEndOfClass{\RequirePackage{microtype}}
+\DeclareOption*{\PassOptionsToClass{\CurrentOption}{article}}
+\ProcessOptions*
+\LoadClass{article}
+\RequirePackage{times}      % Loads the Times-Roman Fonts
+\RequirePackage{mathptmx}   % Loads the Times-Roman Math Fonts
+\RequirePackage{ifpdf}
+
+\RequirePackage{amsmath,amsfonts,amssymb}
+\RequirePackage{graphicx,xcolor}
+\RequirePackage{booktabs}
+\RequirePackage{authblk}
+
+\RequirePackage[left=5cm,%
+                right=2cm,%
+                top=2.25cm,%
+                bottom=2.25cm,%
+                headheight=12pt,%
+                letterpaper]{geometry}%
+                
+\RequirePackage[labelfont={bf,sf},%
+                labelsep=period,%
+                justification=raggedright]{caption}
+                
+\RequirePackage{natbib}
+\bibliographystyle{apalike}
+
+%
+% writeLaTeX logo
+%
+\newcommand\wllogo{%
+\renewcommand*\rmdefault{ugq}\normalfont\upshape{}write%
+\renewcommand*\rmdefault{cmr}\normalfont\upshape{\bf\LaTeX}}
+                
+%
+% headers and footers
+%
+\RequirePackage{fancyhdr}  % custom headers/footers
+\RequirePackage{lastpage}  % Number of pages in the document
+\pagestyle{fancy}          % Enables the custom headers/footers
+% Headers
+\lhead{}%
+\chead{}%
+\rhead{}%
+% Footers
+\lfoot{}%
+\cfoot{}%
+\rfoot{\small\sffamily\bfseries\thepage/\pageref{LastPage}}%
+\renewcommand{\headrulewidth}{0pt}% % No header rule
+\renewcommand{\footrulewidth}{0pt}% % No footer rule
+
+%
+% section/subsection/paragraph set-up
+%
+\RequirePackage[explicit]{titlesec}
+\titleformat{\section}
+  {\color{color1}\large\sffamily\bfseries}
+  {\thesection}
+  {0.5em}
+  {\MakeUppercase{#1}}
+  []
+\titleformat{name=\section,numberless}
+  {\color{color1}\large\sffamily\bfseries}
+  {}
+  {0em}
+  {\MakeUppercase{#1}}
+  []  
+\titleformat{\subsection}
+  {\sffamily\bfseries}
+  {\thesubsection}
+  {0.5em}
+  {#1}
+  []
+\titleformat{\subsubsection}
+  {\sffamily\small\bfseries\itshape}
+  {\thesubsubsection}
+  {0.5em}
+  {#1}
+  []    
+\titleformat{\paragraph}[runin]
+  {\sffamily\small\bfseries}
+  {}
+  {0em}
+  {#1} 
+\titlespacing*{\section}{0pc}{3ex \@plus4pt \@minus3pt}{5pt}
+\titlespacing*{\subsection}{0pc}{2.5ex \@plus3pt \@minus2pt}{0pt}
+\titlespacing*{\subsubsection}{0pc}{2ex \@plus2.5pt \@minus1.5pt}{0pt}
+\titlespacing*{\paragraph}{0pc}{1.5ex \@plus2pt \@minus1pt}{10pt}
+
+%
+% tableofcontents set-up
+%
+\usepackage{titletoc}
+\contentsmargin{0cm}
+\titlecontents{section}[\tocsep]
+  {\addvspace{4pt}\small\bfseries\sffamily}
+  {\contentslabel[\thecontentslabel]{\tocsep}}
+  {}
+  {\hfill\thecontentspage}
+  []
+\titlecontents{subsection}[\tocsep]
+  {\addvspace{2pt}\small\sffamily}
+  {\contentslabel[\thecontentslabel]{\tocsep}}
+  {}
+  {\ \titlerule*[.5pc]{.}\ \thecontentspage}
+  []
+\titlecontents*{subsubsection}[\tocsep]
+  {\footnotesize\sffamily}
+  {}
+  {}
+  {}
+  [\ \textbullet\ ]  
+  
+\RequirePackage{enumitem}
+%\setlist{nolistsep} % Uncomment to remove spacing between items in lists (enumerate, itemize)
+
+% Remove brackets from numbering in List of References
+\renewcommand{\@biblabel}[1]{\bfseries\color{color1}\textsuperscript{[#1]}}
+
+%
+% article meta data
+%
+\newcommand{\keywords}[1]{\def\@keywords{#1}}
+
+\def\xabstract{abstract}
+\long\def\abstract#1\end#2{\def\two{#2}\ifx\two\xabstract 
+\long\gdef\theabstract{\ignorespaces#1}
+\def\go{\end{abstract}}\else
+\typeout{^^J^^J PLEASE DO NOT USE ANY \string\begin\space \string\end^^J
+COMMANDS WITHIN ABSTRACT^^J^^J}#1\end{#2}
+\gdef\theabstract{\vskip12pt BADLY FORMED ABSTRACT: PLEASE DO
+NOT USE {\tt\string\begin...\string\end} COMMANDS WITHIN
+THE ABSTRACT\vskip12pt}\let\go\relax\fi
+\go}
+
+%
+% custom title page 
+%
+\renewcommand{\@maketitle}{%
+{%
+\thispagestyle{empty}%
+\vskip-36pt%
+{\raggedright\sffamily\bfseries\fontsize{20}{25}\selectfont \@title\par}%
+\vskip10pt
+{\raggedright\sffamily\fontsize{12}{16}\selectfont  \@author\par}
+\vskip18pt%
+{%
+\noindent
+{\parbox{\dimexpr\linewidth-2\fboxsep\relax}{\color{color1}\large\sffamily\textbf{ABSTRACT}}}
+}%
+\vskip10pt
+{%
+\noindent
+\colorbox{color2}{%
+\parbox{\dimexpr\linewidth-2\fboxsep\relax}{%
+\sffamily\small\textbf\\\theabstract
+}%
+}%
+\vskip18pt%
+\noindent
+\parbox{\dimexpr\linewidth-2\fboxsep\relax}{%
+{\color{color1}\keywordname\hspace*{1em}} \@keywords%
+}%
+}%
+\vskip25pt%
+}%
+}%
+%-----------------------------------------------
+\setlength{\columnsep}{0.55cm} % Distance between the two columns of text
+\setlength{\fboxrule}{0.75pt} % Width of the border around the abstract
+
+\definecolor{color1}{RGB}{0,0,0} % Color of section headings
+\definecolor{color2}{RGB}{250,232,207} % Color of the box behind the abstract
+\newcommand{\keywordname}{Keywords:} % Defines the keywords heading name
+
+\renewcommand\Authfont{\fontsize{12}{12}\usefont{OT1}{phv}{b}{n}}
+\renewcommand\Affilfont{\fontsize{10}{10}\usefont{OT1}{phv}{b}{n}}
+
+\newlength{\tocsep} 
+\setlength\tocsep{1.5pc} % Sets the indentation of the sections in the table of contents
+\setcounter{tocdepth}{3} % Show only three levels in the table of contents section: sections, subsections and subsubsections
+
+\usepackage{lipsum} % Required to insert dummy text
+%-----------------------------------------------
+\let\oldbibliography\thebibliography
+\renewcommand{\thebibliography}[1]{%
+\addcontentsline{toc}{section}{\hspace*{-\tocsep}\refname}%
+\oldbibliography{#1}%
+\setlength\itemsep{0pt}%
+}
\ No newline at end of file