Triggered by GitLab Merge Request #38: Loic Hausammann/move_to_cpp => master Lightweight checkout support not available, falling back to full checkout. Checking out git https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git into /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script to read Jenkinsfile Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10 Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' Setting http proxy: 172.17.170.12:8888 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10 skipping resolution of commit 5c12ba8aec7374f517d28723466b50652f0a39c6, since it originates from another repository Seen branch in repository origin/add_badges Seen branch in repository origin/assume_full_mask Seen branch in repository origin/ensure_omp Seen branch in repository origin/fix_restart Seen branch in repository origin/implement_evolution Seen branch in repository origin/increase_coverage Seen branch in repository origin/intel Seen branch in repository origin/master Seen branch in repository origin/move_to_cpp Seen branch in repository origin/optimizations Seen branch in repository origin/parallel_inversion Seen branch in repository origin/reimplement_header Seen branch in repository origin/restart_index Seen branch in repository origin/revert-d686a372 Seen branch in repository origin/track_mmap Seen branch in repository origin/use_correct_float Seen 16 remote branches > git show-ref --tags -d # timeout=10 Checking out Revision 5c12ba8aec7374f517d28723466b50652f0a39c6 (origin/move_to_cpp) > git config core.sparsecheckout # timeout=10 > git checkout -f 5c12ba8aec7374f517d28723466b50652f0a39c6 # timeout=10 Commit message: "Test CI" > git rev-list --no-walk f919b3049d68b74b169040559c40d575818563ab # timeout=10 Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10 Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' Setting http proxy: 172.17.170.12:8888 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10 skipping resolution of commit 5c12ba8aec7374f517d28723466b50652f0a39c6, since it originates from another repository Seen branch in repository origin/add_badges Seen branch in repository origin/assume_full_mask Seen branch in repository origin/ensure_omp Seen branch in repository origin/fix_restart Seen branch in repository origin/implement_evolution Seen branch in repository origin/increase_coverage Seen branch in repository origin/intel Seen branch in repository origin/master Seen branch in repository origin/move_to_cpp Seen branch in repository origin/optimizations Seen branch in repository origin/parallel_inversion Seen branch in repository origin/reimplement_header Seen branch in repository origin/restart_index Seen branch in repository origin/revert-d686a372 Seen branch in repository origin/track_mmap Seen branch in repository origin/use_correct_float Seen 16 remote branches > git show-ref --tags -d # timeout=10 Checking out Revision 5c12ba8aec7374f517d28723466b50652f0a39c6 (origin/move_to_cpp) > git config core.sparsecheckout # timeout=10 > git checkout -f 5c12ba8aec7374f517d28723466b50652f0a39c6 # timeout=10 Commit message: "Test CI" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Standard) [Pipeline] updateGitlabCommitStatus [Pipeline] sh + set -e + module purge + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash purge + eval unset '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'JAVA_HOME; MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset JAVA_HOME ++ MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1 ++ export MANPATH_modshare ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module avail + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash avail --------------------- /cosma/local/Modules/modulefiles/mpi --------------------- hpcx-mt/2.2 intel_mpi/2019-update4 openmpi/4.0.3 intel_mpi/2017 intel_mpi/2020 openmpi/4.0.5 intel_mpi/2018 intel_mpi/2020-update1 openmpi/4.1.1 intel_mpi/2019 intel_mpi/2020-update2 openmpi/4.1.1.no-ucx intel_mpi/2019-update1 mvapich2_mpi/2.3.6 openmpi/20190429 intel_mpi/2019-update2 openmpi/3.0.1(default) intel_mpi/2019-update3 openmpi/4.0.1 ------------------ /cosma/local/Modules/modulefiles/compilers ------------------ aocc/1.3.0 intel_comp/2019-update1 aocc/2.0.0 intel_comp/2019-update2 aocc/2.2.0 intel_comp/2019-update3 aocc/3.0.0 intel_comp/2019-update4 aocc_comp/1.3.0 intel_comp/2020 aocc_comp/2.0.0 intel_comp/2020-update1 aocc_comp/2.2.0 intel_comp/2020-update2 aocc_comp/3.0.0 intel_comp/2021.1.0 cuda/10.1(default) intel_comp/2021.3.0 cuda/11.2 llvm/5.0.2 gnu_comp/7.3.0(default) llvm/7.0.0 gnu_comp/8.2.0 llvm/10.0.1 gnu_comp/9.1.0 llvm/11.0.0 gnu_comp/9.3.0 oneAPI/2021.1.0 gnu_comp/10.2.0 oneAPI/2021.1.0-cosma gnu_comp/11.1.0 oneAPI/2021.1.8-betaRelease-cosma intel_comp/2017 oneAPI/2021.3.0 intel_comp/2018(default) oneAPI_comp/2021.1.0 intel_comp/2018-update2 oneAPI_comp/2021.3.0 intel_comp/2019 pgi/2019-1910 ------------------ /cosma/local/Modules/modulefiles/libraries ------------------ aocl/2.2 gsl/2.5 openblas/0.3.12cosma8 aocl/3.0 hdf5/1.8.20 openexr/2.2.1 apr/1.7 hdf5/1.8.20_threadsafe parallel_hdf5/1.8.20 arctic/oct2018 hdf5/1.10.2 parallel_hdf5/1.8.20cosma5 atlas/3.10.3 hdf5/1.10.3(default) parallel_hdf5/1.10.3(default) bison/3.4.1 hdf5/1.10.5 parallel_hdf5/1.10.3cosma5 boost/1_67_0 hdf5/1.10.6 parallel_hdf5/1.10.5 cfitsio/3.450 hdf5/1.12.0 parallel_hdf5/1.10.6 cfitsio/3.490 Healpix/3.40 parallel_hdf5/1.12.0 curl/7.61.0 Healpix/3.70 parmetis/4.0.3(default) eccodes/2.12.0 hwloc/1.11.11 parmetis/4.0.3-64bit fftw/2.1.5 hypre/2.11.2 parmetis/4.0.3cosma5 fftw/3.3.7(default) jemalloc/5.1.0 pgplot/5.2.2 fftw/3.3.7cosma5 libffi/3.2.1 pnetcdf/1.10.0 fftw/3.3.8 libgeos/3.8.1 qt/5.11.1 fftw/3.3.8cosma7 libproj/7.1.1 sundials/3.1.1(default) fftw/3.3.8epyc mesa/18.1.4 sundials/5.1.0 fftw/3.3.9 metis/5.1.0 sundials/5.1.0_c7 fftw/3.3.9cosma7 metis/5.1.0-64bit sundials/5.1.0_c7_single fftw/3.3.9epyc multinest/oct2018 ucx/1.8.1 fgsl/1.2.0 netcdf/4.6.1 ucx/1.10.1 gnu-parallel/20181122 openblas/0.3.6 vtk/8.1.1 grib_api/1.28.0 openblas/0.3.12 wcslib/6.2 gsl/2.4(default) openblas/0.3.12cosma7 -------------------- /cosma/local/Modules/modulefiles/tools -------------------- advisor/2019-update4 pythonconda3/2020-02 allinea/ddt/18.1.2 R/3.5.1 allinea/ddt/20.0.3(default) rsyncLustre/3.1.0 allinea/ddt/20.0.3-arm scalasca/2.4 allinea/ddt/20.2.1 scalasca/2.5 anaconda3/5.2.0 scalasca/2.6 bbcp/20190508 scorep/6.0 cloudy/17.01 scorep/7.0 cmake/3.11.4 sextractor/2.19.5 cmake/3.18.1 singularity/3.6.4 coderrect/1.1.0 sm/2_4_36 cosma/2018 spack/0.15(default) cube/4.5 spack/2020.06 cube/4.6 starlink/2018A ffmpeg/4.0.2 svn/1.10.2 gadgetviewer/1.0.7 swarp/2.38 gadgetviewer/1.0.9 swig/3.0.12 gadgetviewer/1.1.0 texlive/20181109 gdb/10.2 utils/201805 git-lfs/20200330 valgrind/3.13.0 git/2.27.0 vampir/9.10.0 go/1.11.14 vim/jan2019 go/1.15.4 visit/3.1.4(default) gperftools/2.6.1 visit/3.1.4-mesa grafana/7.0.1 vtune/2019-update4 hdfview/2.14.0 wcstools/3.9.5 idl/8.0 yasm/1.3.0 imagemagick/7.0.8-9 yorick/a3972ff influxdb/1.8.0 inspector/2019-update4 itac/2019-update4 java/jdk1.8.0_181 julia/1.5.3 lenstool/7.0 lenstool/20180809-svn lenstool/20210423-git lftp/4.8.4 likwid/5.0.1 likwid/5.2.0 maple/2020 maqao/2.14.0 maqao/2.14.1 matlab/r2020b mplayer/1.3.0 must/1.7.0/gnu_7.3.0_intel_mpi_2018 must/1.7.0/gnu_7.3.0_intel_mpi_2018-dyninst must/1.7.0/gnu_7.3.0_intel_mpi_2020-update2 must/1.7.0/gnu_7.3.0_intel_mpi_2020-update2-dyninst must/1.7.0/gnu_10.2.0_ompi_4.0.5 must/1.7.0/gnu_10.2.0_ompi_4.0.5-dyninst must/1.7.1/gnu_7.3.0_intel_mpi_2018 must/1.7.1/gnu_7.3.0_intel_mpi_2018-dyninst must/1.7.1/gnu_7.3.0_intel_mpi_2020-update2 must/1.7.1/gnu_7.3.0_intel_mpi_2020-update2-dyninst must/1.7.1/gnu_10.2.0_ompi_4.0.5 must/1.7.1/gnu_10.2.0_ompi_4.0.5-dyninst nasm/2.13 nsight-systems/2020.3.1 nvhpc-byo-compiler/20.7 nvhpc-nompi/20.7 nvhpc/20.7 nvhpc/21.5 oprofile/1.3.0 papi/6.0.0 paraview/5.5.2 paraview/5.8.1 paraview/5.9.1 pyHST/nov2018 python/2.7.15(default) python/3.6.5 python/3.8.7-C8 python/3.9.1-C7 python/3.9.1-C8 python/intelpython2 python/intelpython3 pythonconda3/4.5.4(default) --------------------- /cosma/local/Modules/modulefiles/MAD --------------------- casa-pipline/5.6.2 casa/4.7.2 esoreflex/2.11.0 uves_popler/20201116 casa/4.3.1 casa/5.1.1-5 muse/2.4.1(default) casa/4.7.0 casa/5.1.2 muse/2.8 + eval + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load gnu_comp/7.3.0 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load gnu_comp/7.3.0 + eval 'CPATH=/cosma/local/gcc/7.3.0/include;' export 'CPATH; I_MPI_F90=gfortran;' export 'I_MPI_F90; LDFLAGS=-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'LDFLAGS; _COSMA_SYS=gnu_7.3.0;' export '_COSMA_SYS; OMPI_FCFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'OMPI_FCFLAGS; F77=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F77; MPI_CXX_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_CXX_OPTIONS_modshare; MPI_CC_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_CC_OPTIONS; I_MPI_CXX=g++;' export 'I_MPI_CXX; MANPATH=/cosma/local/gcc/7.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/7.3.0/include:1;' export 'CMAKE_INCLUDE_PATH_modshare; F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2;' export 'F90_MODULE_FLAGS_modshare; MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/cosma/local/gcc/7.3.0/share/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare; OMPI_CPPFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'OMPI_CPPFLAGS; OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2;' export 'OMPI_FCFLAGS_modshare; F90=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F90; CMAKE_INCLUDE_PATH=/cosma/local/gcc/7.3.0/include;' export 'CMAKE_INCLUDE_PATH; F90_MODULE_FLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'F90_MODULE_FLAGS; OMPI_LDFLAGS=-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'OMPI_LDFLAGS; CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1;' export 'CPPFLAGS_modshare; OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1;' export 'OMPI_LDFLAGS_modshare; COSMA_OPT=-O3\' '-march=native;' export 'COSMA_OPT; PATH=/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; CC=/cosma/local/gcc/7.3.0/bin/gcc;' export 'CC; CPPFLAGS=-I/cosma/local/gcc/7.3.0/include;' export 'CPPFLAGS; MPI_F90_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_F90_OPTIONS_modshare; LOADEDMODULES=gnu_comp/7.3.0;' export 'LOADEDMODULES; I_MPI_CC=gcc;' export 'I_MPI_CC; CXX=/cosma/local/gcc/7.3.0/bin/g++;' export 'CXX; MPI_F77_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_F77_OPTIONS; GNUROOT=/cosma/local/gcc/7.3.0;' export 'GNUROOT; LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LDFLAGS_modshare; QMAKESPEC=linux-g++-64;' export 'QMAKESPEC; LD_RUN_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LD_RUN_PATH_modshare; LOADEDMODULES_modshare=gnu_comp/7.3.0:1;' export 'LOADEDMODULES_modshare; OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1;' export 'OMPI_CPPFLAGS_modshare; MPI_F90_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_F90_OPTIONS; LD_RUN_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'LD_RUN_PATH; LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'LIBRARY_PATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0;' export '_LMFILES_; LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'LIBRARY_PATH_modshare; MPI_CC_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_CC_OPTIONS_modshare; I_MPI_F77=gfortran;' export 'I_MPI_F77; FC=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'FC; CMAKE_LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/;' export 'CMAKE_LIBRARY_PATH; CPATH_modshare=/cosma/local/gcc/7.3.0/include:2;' export 'CPATH_modshare; MPI_CXX_OPTIONS=-I/cosma/local/gcc/7.3.0/include\' '-L/cosma/local/gcc/7.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/;' export 'MPI_CXX_OPTIONS; CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1;' export 'CMAKE_LIBRARY_PATH_modshare; _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1;' export '_LMFILES__modshare; MPI_F77_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1;' export 'MPI_F77_OPTIONS_modshare; F9X=/cosma/local/gcc/7.3.0/bin/gfortran;' export 'F9X; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ CPATH=/cosma/local/gcc/7.3.0/include ++ export CPATH ++ I_MPI_F90=gfortran ++ export I_MPI_F90 ++ LDFLAGS='-L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export LDFLAGS ++ _COSMA_SYS=gnu_7.3.0 ++ export _COSMA_SYS ++ OMPI_FCFLAGS=-I/cosma/local/gcc/7.3.0/include ++ export OMPI_FCFLAGS ++ F77=/cosma/local/gcc/7.3.0/bin/gfortran ++ export F77 ++ MPI_CXX_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1 ++ export MPI_CXX_OPTIONS_modshare ++ MPI_CC_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export MPI_CC_OPTIONS ++ I_MPI_CXX=g++ ++ export I_MPI_CXX ++ MANPATH=/cosma/local/gcc/7.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/7.3.0/include:1 ++ export CMAKE_INCLUDE_PATH_modshare ++ F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2 ++ export F90_MODULE_FLAGS_modshare ++ MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/cosma/local/gcc/7.3.0/share/man:1:/usr/share/man:1:/usr/local/man:1 ++ export MANPATH_modshare ++ OMPI_CPPFLAGS=-I/cosma/local/gcc/7.3.0/include ++ export OMPI_CPPFLAGS ++ OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:2 ++ export OMPI_FCFLAGS_modshare ++ F90=/cosma/local/gcc/7.3.0/bin/gfortran ++ export F90 ++ CMAKE_INCLUDE_PATH=/cosma/local/gcc/7.3.0/include ++ export CMAKE_INCLUDE_PATH ++ F90_MODULE_FLAGS=-I/cosma/local/gcc/7.3.0/include ++ export F90_MODULE_FLAGS ++ OMPI_LDFLAGS='-L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export OMPI_LDFLAGS ++ CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1 ++ export CPPFLAGS_modshare ++ OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1 ++ export OMPI_LDFLAGS_modshare ++ COSMA_OPT='-O3 -march=native' ++ export COSMA_OPT ++ PATH=/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ CC=/cosma/local/gcc/7.3.0/bin/gcc ++ export CC ++ CPPFLAGS=-I/cosma/local/gcc/7.3.0/include ++ export CPPFLAGS ++ MPI_F90_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1 ++ export MPI_F90_OPTIONS_modshare ++ LOADEDMODULES=gnu_comp/7.3.0 ++ export LOADEDMODULES ++ I_MPI_CC=gcc ++ export I_MPI_CC ++ CXX=/cosma/local/gcc/7.3.0/bin/g++ ++ export CXX ++ MPI_F77_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export MPI_F77_OPTIONS ++ GNUROOT=/cosma/local/gcc/7.3.0 ++ export GNUROOT ++ LDFLAGS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1 ++ export LDFLAGS_modshare ++ QMAKESPEC=linux-g++-64 ++ export QMAKESPEC ++ LD_RUN_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1 ++ export LD_RUN_PATH_modshare ++ LOADEDMODULES_modshare=gnu_comp/7.3.0:1 ++ export LOADEDMODULES_modshare ++ OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/7.3.0/include:1 ++ export OMPI_CPPFLAGS_modshare ++ MPI_F90_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export MPI_F90_OPTIONS ++ LD_RUN_PATH=/cosma/local/gcc/7.3.0/lib64/ ++ export LD_RUN_PATH ++ LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/ ++ export LIBRARY_PATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0 ++ export _LMFILES_ ++ LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1 ++ export LIBRARY_PATH_modshare ++ MPI_CC_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1 ++ export MPI_CC_OPTIONS_modshare ++ I_MPI_F77=gfortran ++ export I_MPI_F77 ++ FC=/cosma/local/gcc/7.3.0/bin/gfortran ++ export FC ++ CMAKE_LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/ ++ export CMAKE_LIBRARY_PATH ++ CPATH_modshare=/cosma/local/gcc/7.3.0/include:2 ++ export CPATH_modshare ++ MPI_CXX_OPTIONS='-I/cosma/local/gcc/7.3.0/include -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/' ++ export MPI_CXX_OPTIONS ++ CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1 ++ export CMAKE_LIBRARY_PATH_modshare ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1 ++ export _LMFILES__modshare ++ MPI_F77_OPTIONS_modshare=-L/cosma/local/gcc/7.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/:1:-I/cosma/local/gcc/7.3.0/include:1 ++ export MPI_F77_OPTIONS_modshare ++ F9X=/cosma/local/gcc/7.3.0/bin/gfortran ++ export F9X ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load llvm/10.0.1 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load llvm/10.0.1 + eval '_LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/7.3.0:1;' export 'LOADEDMODULES_modshare; PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1;' export '_LMFILES_; LOADEDMODULES=gnu_comp/7.3.0:llvm/10.0.1;' export 'LOADEDMODULES; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/7.3.0:1 ++ export LOADEDMODULES_modshare ++ PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/7.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/7.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1 ++ export _LMFILES_ ++ LOADEDMODULES=gnu_comp/7.3.0:llvm/10.0.1 ++ export LOADEDMODULES ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/cosma/local/gcc/7.3.0/bin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + export CLANG_FORMAT_CMD=clang-format + CLANG_FORMAT_CMD=clang-format + git clean -fdx Removing Makefile Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing config.guess Removing config.hpp Removing config.hpp.in Removing config.log Removing config.status Removing config.sub Removing configure Removing depcomp Removing install-sh Removing libtool Removing ltmain.sh Removing m4/libtool.m4 Removing m4/ltoptions.m4 Removing m4/ltsugar.m4 Removing m4/ltversion.m4 Removing m4/lt~obsolete.m4 Removing missing Removing src/.deps/ Removing src/.libs/ Removing src/Makefile Removing src/Makefile.in Removing src/csds_version.hpp Removing stamp-h1 Removing test-driver Removing tests/.deps/ Removing tests/Makefile Removing tests/Makefile.in + ./autogen.sh libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:83: installing './config.guess' configure.ac:83: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' + ./configure checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable debugging... no checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether /cosma/local/gcc/7.3.0/bin/g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of /cosma/local/gcc/7.3.0/bin/g++... gcc3 checking whether /cosma/local/gcc/7.3.0/bin/g++ understands -c and -o together... yes checking for /cosma/local/gcc/7.3.0/bin/g++ option to support OpenMP... -fopenmp checking for C++ compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C++ compiler version... 7.3.0 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for gcc... /cosma/local/gcc/7.3.0/bin/gcc checking whether we are using the GNU C compiler... yes checking whether /cosma/local/gcc/7.3.0/bin/gcc accepts -g... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to accept ISO C89... none needed checking dependency style of /cosma/local/gcc/7.3.0/bin/gcc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /cosma/local/gcc/7.3.0/bin/gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /cosma/local/gcc/7.3.0/bin/gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... /cosma/local/gcc/7.3.0/bin/gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /cosma/local/gcc/7.3.0/bin/gcc supports -fno-rtti -fno-exceptions... no checking for /cosma/local/gcc/7.3.0/bin/gcc option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/7.3.0/bin/gcc PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/7.3.0/bin/gcc static flag -static works... no checking if /cosma/local/gcc/7.3.0/bin/gcc supports -c -o file.o... yes checking if /cosma/local/gcc/7.3.0/bin/gcc supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/7.3.0/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... /cosma/local/gcc/7.3.0/bin/g++ -E checking for ld used by /cosma/local/gcc/7.3.0/bin/g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /cosma/local/gcc/7.3.0/bin/g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /cosma/local/gcc/7.3.0/bin/g++ option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/7.3.0/bin/g++ PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/7.3.0/bin/g++ static flag -static works... no checking if /cosma/local/gcc/7.3.0/bin/g++ supports -c -o file.o... yes checking if /cosma/local/gcc/7.3.0/bin/g++ supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/7.3.0/bin/g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking for ANSI C header files... (cached) yes checking for sqrt in -lm... yes checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking c_asm.h usability... no checking c_asm.h presence... no checking for c_asm.h... no checking intrinsics.h usability... no checking intrinsics.h presence... no checking for intrinsics.h... no checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking whether C++ compiler accepts -Wstrict-prototypes... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.hpp config.status: executing depfiles commands config.status: executing libtool commands ------- Summary -------- CSDS v.1.5 Compiler : /cosma/local/gcc/7.3.0/bin/g++ - vendor : gnu - version : 7.3.0 - flags : -Wall -Wextra -Wshadow -Werror -fopenmp OpenMP enabled : yes Python enabled : no - includes : - libraries : Debugging checks : no Coverage enabled : no Sanitizer enabled : no ------------------------ + make -j 2 make all-recursive make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' Making all in src make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[2]: Circular csds_version.hpp <- csds_version.hpp dependency dropped. sed -e "s,@major_version \@,1," \ -e "s,@minor_version \@,5," csds_version.hpp.in > csds_version.hpp make all-am make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/7.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c -o libcsds_la-csds_header.lo `test -f 'csds_header.cpp' || echo './'`csds_header.cpp /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/7.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_mapped_file.lo -MD -MP -MF .deps/libcsds_la-csds_mapped_file.Tpo -c -o libcsds_la-csds_mapped_file.lo `test -f 'csds_mapped_file.cpp' || echo './'`csds_mapped_file.cpp libtool: compile: /cosma/local/gcc/7.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_header.o libtool: compile: /cosma/local/gcc/7.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_mapped_file.lo -MD -MP -MF .deps/libcsds_la-csds_mapped_file.Tpo -c csds_mapped_file.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_mapped_file.o In file included from csds_tools.hpp:31:0, from csds_python_tools.hpp:25, from csds_fields.hpp:27, from csds_mapped_file.hpp:26, from csds_mapped_file.cpp:19: csds_logfile_writer.hpp: In function 'char* csds_logfile_writer_get(csds_logfile_writer*, size_t, size_t*)': csds_logfile_writer.hpp:118:3: error: value computed is not used [-Werror=unused-value] } ^ In file included from csds_tools.hpp:31:0, from csds_python_tools.hpp:25, from csds_fields.hpp:27, from csds_header.hpp:22, from csds_header.cpp:19: csds_logfile_writer.hpp: In function 'char* csds_logfile_writer_get(csds_logfile_writer*, size_t, size_t*)': csds_logfile_writer.hpp:118:3: error: value computed is not used [-Werror=unused-value] } ^ cc1plus: all warnings being treated as errors make[3]: *** [libcsds_la-csds_mapped_file.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... cc1plus: all warnings being treated as errors make[3]: *** [libcsds_la-csds_header.lo] Error 1 make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[2]: *** [all] Error 2 make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' make: *** [all] Error 2 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Python) Stage "Python" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (No OpenMP) Stage "No OpenMP" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Debugging/Coverage) Stage "Debugging/Coverage" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Intel) Stage "Intel" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE