Triggered by GitLab Merge Request #38: Loic Hausammann/move_to_cpp => master Lightweight checkout support not available, falling back to full checkout. Checking out git https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git into /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script to read Jenkinsfile Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10 Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' Setting http proxy: 172.17.170.12:8888 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10 skipping resolution of commit c254ce838aec9a63ab1209ed6f9ed16026146be8, since it originates from another repository Seen branch in repository origin/add_badges Seen branch in repository origin/assume_full_mask Seen branch in repository origin/ensure_omp Seen branch in repository origin/fix_restart Seen branch in repository origin/implement_evolution Seen branch in repository origin/increase_coverage Seen branch in repository origin/intel Seen branch in repository origin/master Seen branch in repository origin/move_to_cpp Seen branch in repository origin/optimizations Seen branch in repository origin/parallel_inversion Seen branch in repository origin/reimplement_header Seen branch in repository origin/restart_index Seen branch in repository origin/revert-d686a372 Seen branch in repository origin/track_mmap Seen branch in repository origin/use_correct_float Seen 16 remote branches > git show-ref --tags -d # timeout=10 Checking out Revision c254ce838aec9a63ab1209ed6f9ed16026146be8 (origin/move_to_cpp) > git config core.sparsecheckout # timeout=10 > git checkout -f c254ce838aec9a63ab1209ed6f9ed16026146be8 # timeout=10 Commit message: "Fix CI" > git rev-list --no-walk 3407038317a1aa5c086575e65425209ed1597ed6 # timeout=10 Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10 Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' Setting http proxy: 172.17.170.12:8888 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10 skipping resolution of commit c254ce838aec9a63ab1209ed6f9ed16026146be8, since it originates from another repository Seen branch in repository origin/add_badges Seen branch in repository origin/assume_full_mask Seen branch in repository origin/ensure_omp Seen branch in repository origin/fix_restart Seen branch in repository origin/implement_evolution Seen branch in repository origin/increase_coverage Seen branch in repository origin/intel Seen branch in repository origin/master Seen branch in repository origin/move_to_cpp Seen branch in repository origin/optimizations Seen branch in repository origin/parallel_inversion Seen branch in repository origin/reimplement_header Seen branch in repository origin/restart_index Seen branch in repository origin/revert-d686a372 Seen branch in repository origin/track_mmap Seen branch in repository origin/use_correct_float Seen 16 remote branches > git show-ref --tags -d # timeout=10 Checking out Revision c254ce838aec9a63ab1209ed6f9ed16026146be8 (origin/move_to_cpp) > git config core.sparsecheckout # timeout=10 > git checkout -f c254ce838aec9a63ab1209ed6f9ed16026146be8 # timeout=10 Commit message: "Fix CI" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Standard) [Pipeline] updateGitlabCommitStatus [Pipeline] sh + set -e + module purge + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash purge + eval unset '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'JAVA_HOME; MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset JAVA_HOME ++ MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1 ++ export MANPATH_modshare ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load gnu_comp/9.3.0 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load gnu_comp/9.3.0 + eval 'CPATH=/cosma/local/gcc/9.3.0/include;' export 'CPATH; I_MPI_F90=gfortran;' export 'I_MPI_F90; LDFLAGS=-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'LDFLAGS; _COSMA_SYS=gnu_9.3.0;' export '_COSMA_SYS; OMPI_FCFLAGS=-I/cosma/local/gcc/9.3.0/include;' export 'OMPI_FCFLAGS; F77=/cosma/local/gcc/9.3.0/bin/gfortran;' export 'F77; COSMA_ALL_OPT=-O3\' '-march=sandybridge;' export 'COSMA_ALL_OPT; MPI_CXX_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_CXX_OPTIONS_modshare; MPI_CC_OPTIONS=-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_CC_OPTIONS; I_MPI_CXX=g++;' export 'I_MPI_CXX; MANPATH=/cosma/local/gcc/9.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:2;' export 'F90_MODULE_FLAGS_modshare; CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/9.3.0/include:1;' export 'CMAKE_INCLUDE_PATH_modshare; MANPATH_modshare=/cosma/local/gcc/9.3.0/share/man:1:/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare; OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:2;' export 'OMPI_FCFLAGS_modshare; OMPI_CPPFLAGS=-I/cosma/local/gcc/9.3.0/include;' export 'OMPI_CPPFLAGS; F90=/cosma/local/gcc/9.3.0/bin/gfortran;' export 'F90; CMAKE_INCLUDE_PATH=/cosma/local/gcc/9.3.0/include;' export 'CMAKE_INCLUDE_PATH; F90_MODULE_FLAGS=-I/cosma/local/gcc/9.3.0/include;' export 'F90_MODULE_FLAGS; OMPI_LDFLAGS=-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'OMPI_LDFLAGS; CPPFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:1;' export 'CPPFLAGS_modshare; COSMA_7_OPT=-O3\' '-march=skylake-avx512;' export 'COSMA_7_OPT; OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'OMPI_LDFLAGS_modshare; COSMA_OPT=-O3\' '-march=native;' export 'COSMA_OPT; PATH=/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; CC=/cosma/local/gcc/9.3.0/bin/gcc;' export 'CC; CPPFLAGS=-I/cosma/local/gcc/9.3.0/include;' export 'CPPFLAGS; MPI_F90_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_F90_OPTIONS_modshare; LOADEDMODULES=gnu_comp/9.3.0;' export 'LOADEDMODULES; CXX=/cosma/local/gcc/9.3.0/bin/g++;' export 'CXX; I_MPI_CC=gcc;' export 'I_MPI_CC; MPI_F77_OPTIONS=-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_F77_OPTIONS; GNUROOT=/cosma/local/gcc/9.3.0;' export 'GNUROOT; LDFLAGS_modshare=-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'LDFLAGS_modshare; QMAKESPEC=linux-g++-64;' export 'QMAKESPEC; LD_RUN_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1;' export 'LD_RUN_PATH_modshare; LOADEDMODULES_modshare=gnu_comp/9.3.0:1;' export 'LOADEDMODULES_modshare; OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:1;' export 'OMPI_CPPFLAGS_modshare; MPI_F90_OPTIONS=-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_F90_OPTIONS; LD_RUN_PATH=/cosma/local/gcc/9.3.0/lib64/;' export 'LD_RUN_PATH; LIBRARY_PATH=/cosma/local/gcc/9.3.0/lib64/;' export 'LIBRARY_PATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0;' export '_LMFILES_; LIBRARY_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1;' export 'LIBRARY_PATH_modshare; MPI_CC_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_CC_OPTIONS_modshare; FC=/cosma/local/gcc/9.3.0/bin/gfortran;' export 'FC; I_MPI_F77=gfortran;' export 'I_MPI_F77; CMAKE_LIBRARY_PATH=/cosma/local/gcc/9.3.0/lib64/;' export 'CMAKE_LIBRARY_PATH; CPATH_modshare=/cosma/local/gcc/9.3.0/include:2;' export 'CPATH_modshare; MPI_CXX_OPTIONS=-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_CXX_OPTIONS; CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1;' export 'CMAKE_LIBRARY_PATH_modshare; _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1;' export '_LMFILES__modshare; COSMA_8_OPT=-O3\' '-march=znver2;' export 'COSMA_8_OPT; MPI_F77_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_F77_OPTIONS_modshare; F9X=/cosma/local/gcc/9.3.0/bin/gfortran;' export 'F9X; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ CPATH=/cosma/local/gcc/9.3.0/include ++ export CPATH ++ I_MPI_F90=gfortran ++ export I_MPI_F90 ++ LDFLAGS='-L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export LDFLAGS ++ _COSMA_SYS=gnu_9.3.0 ++ export _COSMA_SYS ++ OMPI_FCFLAGS=-I/cosma/local/gcc/9.3.0/include ++ export OMPI_FCFLAGS ++ F77=/cosma/local/gcc/9.3.0/bin/gfortran ++ export F77 ++ COSMA_ALL_OPT='-O3 -march=sandybridge' ++ export COSMA_ALL_OPT ++ MPI_CXX_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_CXX_OPTIONS_modshare ++ MPI_CC_OPTIONS='-I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_CC_OPTIONS ++ I_MPI_CXX=g++ ++ export I_MPI_CXX ++ MANPATH=/cosma/local/gcc/9.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:2 ++ export F90_MODULE_FLAGS_modshare ++ CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/9.3.0/include:1 ++ export CMAKE_INCLUDE_PATH_modshare ++ MANPATH_modshare=/cosma/local/gcc/9.3.0/share/man:1:/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1 ++ export MANPATH_modshare ++ OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:2 ++ export OMPI_FCFLAGS_modshare ++ OMPI_CPPFLAGS=-I/cosma/local/gcc/9.3.0/include ++ export OMPI_CPPFLAGS ++ F90=/cosma/local/gcc/9.3.0/bin/gfortran ++ export F90 ++ CMAKE_INCLUDE_PATH=/cosma/local/gcc/9.3.0/include ++ export CMAKE_INCLUDE_PATH ++ F90_MODULE_FLAGS=-I/cosma/local/gcc/9.3.0/include ++ export F90_MODULE_FLAGS ++ OMPI_LDFLAGS='-L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export OMPI_LDFLAGS ++ CPPFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:1 ++ export CPPFLAGS_modshare ++ COSMA_7_OPT='-O3 -march=skylake-avx512' ++ export COSMA_7_OPT ++ OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export OMPI_LDFLAGS_modshare ++ COSMA_OPT='-O3 -march=native' ++ export COSMA_OPT ++ PATH=/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ CC=/cosma/local/gcc/9.3.0/bin/gcc ++ export CC ++ CPPFLAGS=-I/cosma/local/gcc/9.3.0/include ++ export CPPFLAGS ++ MPI_F90_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_F90_OPTIONS_modshare ++ LOADEDMODULES=gnu_comp/9.3.0 ++ export LOADEDMODULES ++ CXX=/cosma/local/gcc/9.3.0/bin/g++ ++ export CXX ++ I_MPI_CC=gcc ++ export I_MPI_CC ++ MPI_F77_OPTIONS='-I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_F77_OPTIONS ++ GNUROOT=/cosma/local/gcc/9.3.0 ++ export GNUROOT ++ LDFLAGS_modshare=-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export LDFLAGS_modshare ++ QMAKESPEC=linux-g++-64 ++ export QMAKESPEC ++ LD_RUN_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1 ++ export LD_RUN_PATH_modshare ++ LOADEDMODULES_modshare=gnu_comp/9.3.0:1 ++ export LOADEDMODULES_modshare ++ OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:1 ++ export OMPI_CPPFLAGS_modshare ++ MPI_F90_OPTIONS='-I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_F90_OPTIONS ++ LD_RUN_PATH=/cosma/local/gcc/9.3.0/lib64/ ++ export LD_RUN_PATH ++ LIBRARY_PATH=/cosma/local/gcc/9.3.0/lib64/ ++ export LIBRARY_PATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0 ++ export _LMFILES_ ++ LIBRARY_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1 ++ export LIBRARY_PATH_modshare ++ MPI_CC_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_CC_OPTIONS_modshare ++ FC=/cosma/local/gcc/9.3.0/bin/gfortran ++ export FC ++ I_MPI_F77=gfortran ++ export I_MPI_F77 ++ CMAKE_LIBRARY_PATH=/cosma/local/gcc/9.3.0/lib64/ ++ export CMAKE_LIBRARY_PATH ++ CPATH_modshare=/cosma/local/gcc/9.3.0/include:2 ++ export CPATH_modshare ++ MPI_CXX_OPTIONS='-I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_CXX_OPTIONS ++ CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1 ++ export CMAKE_LIBRARY_PATH_modshare ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1 ++ export _LMFILES__modshare ++ COSMA_8_OPT='-O3 -march=znver2' ++ export COSMA_8_OPT ++ MPI_F77_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_F77_OPTIONS_modshare ++ F9X=/cosma/local/gcc/9.3.0/bin/gfortran ++ export F9X ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load llvm/10.0.1 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load llvm/10.0.1 + eval '_LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/9.3.0:1;' export 'LOADEDMODULES_modshare; PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1;' export '_LMFILES_; LOADEDMODULES=gnu_comp/9.3.0:llvm/10.0.1;' export 'LOADEDMODULES; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/9.3.0:1 ++ export LOADEDMODULES_modshare ++ PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1 ++ export _LMFILES_ ++ LOADEDMODULES=gnu_comp/9.3.0:llvm/10.0.1 ++ export LOADEDMODULES ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + export CLANG_FORMAT_CMD=clang-format + CLANG_FORMAT_CMD=clang-format + git clean -fdx Removing Makefile Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing config.guess Removing config.hpp Removing config.hpp.in Removing config.log Removing config.status Removing config.sub Removing configure Removing depcomp Removing install-sh Removing libtool Removing ltmain.sh Removing m4/libtool.m4 Removing m4/ltoptions.m4 Removing m4/ltsugar.m4 Removing m4/ltversion.m4 Removing m4/lt~obsolete.m4 Removing missing Removing src/.deps/ Removing src/.libs/ Removing src/Makefile Removing src/Makefile.in Removing src/csds_version.hpp Removing src/libcsds.la Removing src/libcsds_la-csds_clocks.lo Removing src/libcsds_la-csds_clocks.o Removing src/libcsds_la-csds_cosmology.lo Removing src/libcsds_la-csds_cosmology.o Removing src/libcsds_la-csds_fields.lo Removing src/libcsds_la-csds_fields.o Removing src/libcsds_la-csds_hashmap.lo Removing src/libcsds_la-csds_hashmap.o Removing src/libcsds_la-csds_header.lo Removing src/libcsds_la-csds_header.o Removing src/libcsds_la-csds_index.lo Removing src/libcsds_la-csds_index.o Removing src/libcsds_la-csds_logfile.lo Removing src/libcsds_la-csds_logfile.o Removing src/libcsds_la-csds_mapped_file.lo Removing src/libcsds_la-csds_mapped_file.o Removing src/libcsds_la-csds_parameters.lo Removing src/libcsds_la-csds_parameters.o Removing src/libcsds_la-csds_parser.lo Removing src/libcsds_la-csds_parser.o Removing src/libcsds_la-csds_part_type.lo Removing src/libcsds_la-csds_part_type.o Removing src/libcsds_la-csds_quick_sort.lo Removing src/libcsds_la-csds_quick_sort.o Removing src/libcsds_la-csds_reader.lo Removing src/libcsds_la-csds_reader.o Removing src/libcsds_la-csds_reader_generate_index.lo Removing src/libcsds_la-csds_reader_generate_index.o Removing src/libcsds_la-csds_time.lo Removing src/libcsds_la-csds_time.o Removing src/libcsds_la-csds_tools.lo Removing src/libcsds_la-csds_tools.o Removing src/libcsds_writer.la Removing src/libcsds_writer_la-csds_logfile_writer.lo Removing src/libcsds_writer_la-csds_logfile_writer.o Removing stamp-h1 Removing test-driver Removing tests/.deps/ Removing tests/.libs/ Removing tests/Makefile Removing tests/Makefile.in Removing tests/testHashmap Removing tests/testHashmap.o Removing tests/testLogfileHeader Removing tests/testLogfileHeader.o Removing tests/testLogfileReader Removing tests/testLogfileReader.o Removing tests/testQuickSort Removing tests/testQuickSort.o Removing tests/testTimeArray Removing tests/testTimeArray.o Removing tests/testVirtualReality Removing tests/testVirtualReality.o + ./autogen.sh libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:83: installing './config.guess' configure.ac:83: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' + ./configure checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable debugging... no checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether /cosma/local/gcc/9.3.0/bin/g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of /cosma/local/gcc/9.3.0/bin/g++... gcc3 checking whether /cosma/local/gcc/9.3.0/bin/g++ understands -c and -o together... yes checking for /cosma/local/gcc/9.3.0/bin/g++ option to support OpenMP... -fopenmp checking for C++ compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C++ compiler version... 9.3.0 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for gcc... /cosma/local/gcc/9.3.0/bin/gcc checking whether we are using the GNU C compiler... yes checking whether /cosma/local/gcc/9.3.0/bin/gcc accepts -g... yes checking for /cosma/local/gcc/9.3.0/bin/gcc option to accept ISO C89... none needed checking dependency style of /cosma/local/gcc/9.3.0/bin/gcc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /cosma/local/gcc/9.3.0/bin/gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /cosma/local/gcc/9.3.0/bin/gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... /cosma/local/gcc/9.3.0/bin/gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /cosma/local/gcc/9.3.0/bin/gcc supports -fno-rtti -fno-exceptions... no checking for /cosma/local/gcc/9.3.0/bin/gcc option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/9.3.0/bin/gcc PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/9.3.0/bin/gcc static flag -static works... no checking if /cosma/local/gcc/9.3.0/bin/gcc supports -c -o file.o... yes checking if /cosma/local/gcc/9.3.0/bin/gcc supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/9.3.0/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... /cosma/local/gcc/9.3.0/bin/g++ -E checking for ld used by /cosma/local/gcc/9.3.0/bin/g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /cosma/local/gcc/9.3.0/bin/g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /cosma/local/gcc/9.3.0/bin/g++ option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/9.3.0/bin/g++ PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/9.3.0/bin/g++ static flag -static works... no checking if /cosma/local/gcc/9.3.0/bin/g++ supports -c -o file.o... yes checking if /cosma/local/gcc/9.3.0/bin/g++ supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/9.3.0/bin/g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking for ANSI C header files... (cached) yes checking for sqrt in -lm... yes checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking c_asm.h usability... no checking c_asm.h presence... no checking for c_asm.h... no checking intrinsics.h usability... no checking intrinsics.h presence... no checking for intrinsics.h... no checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking whether C++ compiler accepts -Wstrict-prototypes... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.hpp config.status: executing depfiles commands config.status: executing libtool commands ------- Summary -------- CSDS v.2.0 Compiler : /cosma/local/gcc/9.3.0/bin/g++ - vendor : gnu - version : 9.3.0 - flags : -Wall -Wextra -Wshadow -Werror -fopenmp OpenMP enabled : yes Python enabled : no - includes : - libraries : Debugging checks : no Coverage enabled : no Sanitizer enabled : no ------------------------ + make -j 2 make all-recursive make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' Making all in src make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[2]: Circular csds_version.hpp <- csds_version.hpp dependency dropped. sed -e "s,@major_version \@,2," \ -e "s,@minor_version \@,0," csds_version.hpp.in > csds_version.hpp make all-am make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c -o libcsds_la-csds_header.lo `test -f 'csds_header.cpp' || echo './'`csds_header.cpp /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_mapped_file.lo -MD -MP -MF .deps/libcsds_la-csds_mapped_file.Tpo -c -o libcsds_la-csds_mapped_file.lo `test -f 'csds_mapped_file.cpp' || echo './'`csds_mapped_file.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_header.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_mapped_file.lo -MD -MP -MF .deps/libcsds_la-csds_mapped_file.Tpo -c csds_mapped_file.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_mapped_file.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_mapped_file.lo -MD -MP -MF .deps/libcsds_la-csds_mapped_file.Tpo -c csds_mapped_file.cpp -o libcsds_la-csds_mapped_file.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.cpp -o libcsds_la-csds_header.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_mapped_file.Tpo .deps/libcsds_la-csds_mapped_file.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c -o libcsds_la-csds_time.lo `test -f 'csds_time.cpp' || echo './'`csds_time.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c csds_time.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_time.o mv -f .deps/libcsds_la-csds_header.Tpo .deps/libcsds_la-csds_header.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c -o libcsds_la-csds_tools.lo `test -f 'csds_tools.cpp' || echo './'`csds_tools.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c csds_tools.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_tools.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c csds_time.cpp -o libcsds_la-csds_time.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c csds_tools.cpp -o libcsds_la-csds_tools.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_time.Tpo .deps/libcsds_la-csds_time.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_reader.lo -MD -MP -MF .deps/libcsds_la-csds_reader.Tpo -c -o libcsds_la-csds_reader.lo `test -f 'csds_reader.cpp' || echo './'`csds_reader.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_reader.lo -MD -MP -MF .deps/libcsds_la-csds_reader.Tpo -c csds_reader.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_reader.o mv -f .deps/libcsds_la-csds_tools.Tpo .deps/libcsds_la-csds_tools.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_logfile.lo -MD -MP -MF .deps/libcsds_la-csds_logfile.Tpo -c -o libcsds_la-csds_logfile.lo `test -f 'csds_logfile.cpp' || echo './'`csds_logfile.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_logfile.lo -MD -MP -MF .deps/libcsds_la-csds_logfile.Tpo -c csds_logfile.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_logfile.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_logfile.lo -MD -MP -MF .deps/libcsds_la-csds_logfile.Tpo -c csds_logfile.cpp -o libcsds_la-csds_logfile.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_logfile.Tpo .deps/libcsds_la-csds_logfile.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_index.lo -MD -MP -MF .deps/libcsds_la-csds_index.Tpo -c -o libcsds_la-csds_index.lo `test -f 'csds_index.cpp' || echo './'`csds_index.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. 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-I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c -o libcsds_la-csds_part_type.lo `test -f 'csds_part_type.cpp' || echo './'`csds_part_type.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_part_type.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.cpp -o libcsds_la-csds_part_type.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_part_type.Tpo .deps/libcsds_la-csds_part_type.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c -o libcsds_writer_la-csds_logfile_writer.lo `test -f 'csds_logfile_writer.cpp' || echo './'`csds_logfile_writer.cpp make[3]: Circular csds_version.hpp <- csds_version.hpp dependency dropped. libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.cpp -fPIC -DPIC -o .libs/libcsds_writer_la-csds_logfile_writer.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c csds_parser.cpp -o 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link: (cd ".libs" && rm -f "libcsds.so" && ln -s "libcsds.so.0.0.0" "libcsds.so") libtool: link: ar cru .libs/libcsds.a libcsds_la-csds_header.o libcsds_la-csds_mapped_file.o libcsds_la-csds_time.o libcsds_la-csds_tools.o libcsds_la-csds_reader.o libcsds_la-csds_logfile.o libcsds_la-csds_index.o libcsds_la-csds_quick_sort.o libcsds_la-csds_parameters.o libcsds_la-csds_reader_generate_index.o libcsds_la-csds_cosmology.o libcsds_la-csds_fields.o libcsds_la-csds_hashmap.o libcsds_la-csds_clocks.o libcsds_la-csds_parser.o libcsds_la-csds_part_type.o libtool: link: ranlib .libs/libcsds.a libtool: link: (cd ".libs" && rm -f "libcsds_writer.so.0" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so.0") libtool: link: ( cd ".libs" && rm -f "libcsds.la" && ln -s "../libcsds.la" "libcsds.la" ) libtool: link: (cd ".libs" && rm -f "libcsds_writer.so" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so") libtool: link: ar cru .libs/libcsds_writer.a libcsds_writer_la-csds_logfile_writer.o libtool: link: ranlib .libs/libcsds_writer.a libtool: link: ( cd ".libs" && rm -f "libcsds_writer.la" && ln -s "../libcsds_writer.la" "libcsds_writer.la" ) make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' Making all in tests make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' + make check Making check in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[1]: Circular csds_version.hpp <- csds_version.hpp dependency dropped. make check-am make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[2]: Circular csds_version.hpp <- csds_version.hpp dependency dropped. make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' Making check in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap testInterpolation testParser make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' depbase=`echo testLogfileHeader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -MT testLogfileHeader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileHeader.o testLogfileHeader.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o -lm libtool: link: /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -lm -fopenmp depbase=`echo testLogfileReader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -MT testLogfileReader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileReader.o testLogfileReader.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testLogfileReader testLogfileReader.o -lm libtool: link: /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testLogfileReader testLogfileReader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -lm -fopenmp depbase=`echo testTimeArray.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -MT testTimeArray.o -MD -MP -MF $depbase.Tpo -c -o testTimeArray.o testTimeArray.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testTimeArray testTimeArray.o -lm libtool: link: /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testTimeArray testTimeArray.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -lm -fopenmp depbase=`echo testQuickSort.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -MT testQuickSort.o -MD -MP -MF $depbase.Tpo -c -o testQuickSort.o testQuickSort.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testQuickSort testQuickSort.o -lm libtool: link: /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testQuickSort testQuickSort.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -lm -fopenmp depbase=`echo testVirtualReality.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -MT testVirtualReality.o -MD -MP -MF $depbase.Tpo -c -o testVirtualReality.o testVirtualReality.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testVirtualReality testVirtualReality.o -lm libtool: link: /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testVirtualReality testVirtualReality.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -lm -fopenmp depbase=`echo testHashmap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -MT testHashmap.o -MD -MP -MF $depbase.Tpo -c -o testHashmap.o testHashmap.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testHashmap testHashmap.o -lm libtool: link: /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testHashmap testHashmap.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -lm -fopenmp depbase=`echo testInterpolation.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -MT testInterpolation.o -MD -MP -MF $depbase.Tpo -c -o testInterpolation.o testInterpolation.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testInterpolation testInterpolation.o -lm libtool: link: /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testInterpolation testInterpolation.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -lm -fopenmp depbase=`echo testParser.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/gcc/9.3.0/include -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -MT testParser.o -MD -MP -MF $depbase.Tpo -c -o testParser.o testParser.cpp &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CXX --mode=link /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testParser testParser.o -lm libtool: link: /cosma/local/gcc/9.3.0/bin/g++ -fopenmp -I../src -DCSDS_TEST -Wall -Wextra -Wshadow -Werror -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/ -o testParser testParser.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/9.3.0/lib64/ -lm -fopenmp make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make check-TESTS make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' PASS: testLogfileHeader PASS: testLogfileReader PASS: testTimeArray PASS: testQuickSort PASS: testVirtualReality PASS: testHashmap PASS: testInterpolation PASS: testParser make[4]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' ============================================================================ Testsuite summary for CSDS 2.0 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' + make clean Making clean in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' test -z "libcsds.la libcsds_writer.la" || rm -f libcsds.la libcsds_writer.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' Making clean in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' rm -f testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap testInterpolation testParser rm -rf .libs _libs rm -f *.o test -z "testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log testInterpolation.log testParser.log" || rm -f testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log testInterpolation.log testParser.log test -z "testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs testInterpolation.trs testParser.trs" || rm -f testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs testInterpolation.trs testParser.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' [Pipeline] updateGitlabCommitStatus [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Python) [Pipeline] updateGitlabCommitStatus [Pipeline] sh + set -e + module purge + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash purge + eval unset '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'JAVA_HOME; MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ MANPATH=/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ PATH=/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset JAVA_HOME ++ MANPATH_modshare=/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1 ++ export MANPATH_modshare ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load gnu_comp/9.3.0 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load gnu_comp/9.3.0 + eval 'CPATH=/cosma/local/gcc/9.3.0/include;' export 'CPATH; I_MPI_F90=gfortran;' export 'I_MPI_F90; LDFLAGS=-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'LDFLAGS; _COSMA_SYS=gnu_9.3.0;' export '_COSMA_SYS; OMPI_FCFLAGS=-I/cosma/local/gcc/9.3.0/include;' export 'OMPI_FCFLAGS; F77=/cosma/local/gcc/9.3.0/bin/gfortran;' export 'F77; COSMA_ALL_OPT=-O3\' '-march=sandybridge;' export 'COSMA_ALL_OPT; MPI_CXX_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_CXX_OPTIONS_modshare; MPI_CC_OPTIONS=-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_CC_OPTIONS; I_MPI_CXX=g++;' export 'I_MPI_CXX; MANPATH=/cosma/local/gcc/9.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:2;' export 'F90_MODULE_FLAGS_modshare; CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/9.3.0/include:1;' export 'CMAKE_INCLUDE_PATH_modshare; MANPATH_modshare=/cosma/local/gcc/9.3.0/share/man:1:/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1;' export 'MANPATH_modshare; OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:2;' export 'OMPI_FCFLAGS_modshare; OMPI_CPPFLAGS=-I/cosma/local/gcc/9.3.0/include;' export 'OMPI_CPPFLAGS; F90=/cosma/local/gcc/9.3.0/bin/gfortran;' export 'F90; CMAKE_INCLUDE_PATH=/cosma/local/gcc/9.3.0/include;' export 'CMAKE_INCLUDE_PATH; F90_MODULE_FLAGS=-I/cosma/local/gcc/9.3.0/include;' export 'F90_MODULE_FLAGS; OMPI_LDFLAGS=-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'OMPI_LDFLAGS; CPPFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:1;' export 'CPPFLAGS_modshare; COSMA_7_OPT=-O3\' '-march=skylake-avx512;' export 'COSMA_7_OPT; OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'OMPI_LDFLAGS_modshare; COSMA_OPT=-O3\' '-march=native;' export 'COSMA_OPT; PATH=/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; CC=/cosma/local/gcc/9.3.0/bin/gcc;' export 'CC; CPPFLAGS=-I/cosma/local/gcc/9.3.0/include;' export 'CPPFLAGS; MPI_F90_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_F90_OPTIONS_modshare; LOADEDMODULES=gnu_comp/9.3.0;' export 'LOADEDMODULES; CXX=/cosma/local/gcc/9.3.0/bin/g++;' export 'CXX; I_MPI_CC=gcc;' export 'I_MPI_CC; MPI_F77_OPTIONS=-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_F77_OPTIONS; GNUROOT=/cosma/local/gcc/9.3.0;' export 'GNUROOT; LDFLAGS_modshare=-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'LDFLAGS_modshare; QMAKESPEC=linux-g++-64;' export 'QMAKESPEC; LD_RUN_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1;' export 'LD_RUN_PATH_modshare; LOADEDMODULES_modshare=gnu_comp/9.3.0:1;' export 'LOADEDMODULES_modshare; OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:1;' export 'OMPI_CPPFLAGS_modshare; MPI_F90_OPTIONS=-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_F90_OPTIONS; LD_RUN_PATH=/cosma/local/gcc/9.3.0/lib64/;' export 'LD_RUN_PATH; LIBRARY_PATH=/cosma/local/gcc/9.3.0/lib64/;' export 'LIBRARY_PATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0;' export '_LMFILES_; LIBRARY_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1;' export 'LIBRARY_PATH_modshare; MPI_CC_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_CC_OPTIONS_modshare; FC=/cosma/local/gcc/9.3.0/bin/gfortran;' export 'FC; I_MPI_F77=gfortran;' export 'I_MPI_F77; CMAKE_LIBRARY_PATH=/cosma/local/gcc/9.3.0/lib64/;' export 'CMAKE_LIBRARY_PATH; CPATH_modshare=/cosma/local/gcc/9.3.0/include:2;' export 'CPATH_modshare; MPI_CXX_OPTIONS=-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_CXX_OPTIONS; CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1;' export 'CMAKE_LIBRARY_PATH_modshare; _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1;' export '_LMFILES__modshare; COSMA_8_OPT=-O3\' '-march=znver2;' export 'COSMA_8_OPT; MPI_F77_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_F77_OPTIONS_modshare; F9X=/cosma/local/gcc/9.3.0/bin/gfortran;' export 'F9X; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ CPATH=/cosma/local/gcc/9.3.0/include ++ export CPATH ++ I_MPI_F90=gfortran ++ export I_MPI_F90 ++ LDFLAGS='-L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export LDFLAGS ++ _COSMA_SYS=gnu_9.3.0 ++ export _COSMA_SYS ++ OMPI_FCFLAGS=-I/cosma/local/gcc/9.3.0/include ++ export OMPI_FCFLAGS ++ F77=/cosma/local/gcc/9.3.0/bin/gfortran ++ export F77 ++ COSMA_ALL_OPT='-O3 -march=sandybridge' ++ export COSMA_ALL_OPT ++ MPI_CXX_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_CXX_OPTIONS_modshare ++ MPI_CC_OPTIONS='-I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_CC_OPTIONS ++ I_MPI_CXX=g++ ++ export I_MPI_CXX ++ MANPATH=/cosma/local/gcc/9.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ F90_MODULE_FLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:2 ++ export F90_MODULE_FLAGS_modshare ++ CMAKE_INCLUDE_PATH_modshare=/cosma/local/gcc/9.3.0/include:1 ++ export CMAKE_INCLUDE_PATH_modshare ++ MANPATH_modshare=/cosma/local/gcc/9.3.0/share/man:1:/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1 ++ export MANPATH_modshare ++ OMPI_FCFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:2 ++ export OMPI_FCFLAGS_modshare ++ OMPI_CPPFLAGS=-I/cosma/local/gcc/9.3.0/include ++ export OMPI_CPPFLAGS ++ F90=/cosma/local/gcc/9.3.0/bin/gfortran ++ export F90 ++ CMAKE_INCLUDE_PATH=/cosma/local/gcc/9.3.0/include ++ export CMAKE_INCLUDE_PATH ++ F90_MODULE_FLAGS=-I/cosma/local/gcc/9.3.0/include ++ export F90_MODULE_FLAGS ++ OMPI_LDFLAGS='-L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export OMPI_LDFLAGS ++ CPPFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:1 ++ export CPPFLAGS_modshare ++ COSMA_7_OPT='-O3 -march=skylake-avx512' ++ export COSMA_7_OPT ++ OMPI_LDFLAGS_modshare=-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export OMPI_LDFLAGS_modshare ++ COSMA_OPT='-O3 -march=native' ++ export COSMA_OPT ++ PATH=/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ CC=/cosma/local/gcc/9.3.0/bin/gcc ++ export CC ++ CPPFLAGS=-I/cosma/local/gcc/9.3.0/include ++ export CPPFLAGS ++ MPI_F90_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_F90_OPTIONS_modshare ++ LOADEDMODULES=gnu_comp/9.3.0 ++ export LOADEDMODULES ++ CXX=/cosma/local/gcc/9.3.0/bin/g++ ++ export CXX ++ I_MPI_CC=gcc ++ export I_MPI_CC ++ MPI_F77_OPTIONS='-I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_F77_OPTIONS ++ GNUROOT=/cosma/local/gcc/9.3.0 ++ export GNUROOT ++ LDFLAGS_modshare=-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export LDFLAGS_modshare ++ QMAKESPEC=linux-g++-64 ++ export QMAKESPEC ++ LD_RUN_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1 ++ export LD_RUN_PATH_modshare ++ LOADEDMODULES_modshare=gnu_comp/9.3.0:1 ++ export LOADEDMODULES_modshare ++ OMPI_CPPFLAGS_modshare=-I/cosma/local/gcc/9.3.0/include:1 ++ export OMPI_CPPFLAGS_modshare ++ MPI_F90_OPTIONS='-I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_F90_OPTIONS ++ LD_RUN_PATH=/cosma/local/gcc/9.3.0/lib64/ ++ export LD_RUN_PATH ++ LIBRARY_PATH=/cosma/local/gcc/9.3.0/lib64/ ++ export LIBRARY_PATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0 ++ export _LMFILES_ ++ LIBRARY_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1 ++ export LIBRARY_PATH_modshare ++ MPI_CC_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_CC_OPTIONS_modshare ++ FC=/cosma/local/gcc/9.3.0/bin/gfortran ++ export FC ++ I_MPI_F77=gfortran ++ export I_MPI_F77 ++ CMAKE_LIBRARY_PATH=/cosma/local/gcc/9.3.0/lib64/ ++ export CMAKE_LIBRARY_PATH ++ CPATH_modshare=/cosma/local/gcc/9.3.0/include:2 ++ export CPATH_modshare ++ MPI_CXX_OPTIONS='-I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_CXX_OPTIONS ++ CMAKE_LIBRARY_PATH_modshare=/cosma/local/gcc/9.3.0/lib64/:1 ++ export CMAKE_LIBRARY_PATH_modshare ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1 ++ export _LMFILES__modshare ++ COSMA_8_OPT='-O3 -march=znver2' ++ export COSMA_8_OPT ++ MPI_F77_OPTIONS_modshare=-I/cosma/local/gcc/9.3.0/include:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_F77_OPTIONS_modshare ++ F9X=/cosma/local/gcc/9.3.0/bin/gfortran ++ export F9X ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load llvm/10.0.1 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load llvm/10.0.1 + eval '_LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/9.3.0:1;' export 'LOADEDMODULES_modshare; PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1;' export '_LMFILES_; LOADEDMODULES=gnu_comp/9.3.0:llvm/10.0.1;' export 'LOADEDMODULES; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=llvm/10.0.1:1:gnu_comp/9.3.0:1 ++ export LOADEDMODULES_modshare ++ PATH=/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1 ++ export _LMFILES_ ++ LOADEDMODULES=gnu_comp/9.3.0:llvm/10.0.1 ++ export LOADEDMODULES ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + module load python/3.6.5 + unset _mlre _mlIFS _mlshdbg + '[' 0 = 1 ']' + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + '[' -n '' ']' ++ /usr/bin/tclsh /cosma/local/Modules/default/libexec/modulecmd.tcl bash load python/3.6.5 + eval 'CPATH=/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:/cosma/local/Python/3.6.5/include/python3.6m/:/cosma/local/gcc/9.3.0/include;' export 'CPATH; LD_LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/:/cosma/local/Python/3.6.5/lib;' export 'LD_LIBRARY_PATH; CPPFLAGS=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/\' '-I/cosma/local/Python/3.6.5/include/python3.6m/\' '-I/cosma/local/gcc/9.3.0/include;' export 'CPPFLAGS; MANPATH=/cosma/local/Python/3.6.5/share/man:/cosma/local/gcc/9.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man;' export 'MANPATH; _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:/cosma/local/Modules/modulefiles/tools/python/3.6.5;' export '_LMFILES_; LOADEDMODULES=gnu_comp/9.3.0:llvm/10.0.1:python/3.6.5;' export 'LOADEDMODULES; CMAKE_INCLUDE_PATH_modshare=/cosma/local/Python/3.6.5/include/python3.6m/:1:/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:/cosma/local/gcc/9.3.0/include:1;' export 'CMAKE_INCLUDE_PATH_modshare; MANPATH_modshare=/cosma/local/gcc/9.3.0/share/man:1:/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1:/cosma/local/Python/3.6.5/share/man:1;' export 'MANPATH_modshare; PKG_CONFIG_PATH=/cosma/local/Python/3.6.5/lib/pkgconfig;' export 'PKG_CONFIG_PATH; OMPI_CPPFLAGS=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/\' '-I/cosma/local/Python/3.6.5/include/python3.6m/\' '-I/cosma/local/gcc/9.3.0/include;' export 'OMPI_CPPFLAGS; PYTHON_MAJMIN=3.6;' export 'PYTHON_MAJMIN; PKG_CONFIG_PATH_modshare=/cosma/local/Python/3.6.5/lib/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; CMAKE_INCLUDE_PATH=/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:/cosma/local/Python/3.6.5/include/python3.6m/:/cosma/local/gcc/9.3.0/include;' export 'CMAKE_INCLUDE_PATH; MPI_CC_OPTIONS_modshare=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:-I/cosma/local/gcc/9.3.0/include:1:-I/cosma/local/Python/3.6.5/include/python3.6m/:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_CC_OPTIONS_modshare; PYTHON_INCLUDE_PATH=/cosma/local/Python/3.6.5/include/python3.6m;' export 'PYTHON_INCLUDE_PATH; CPATH_modshare=/cosma/local/Python/3.6.5/include/python3.6m/:1:/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:/cosma/local/gcc/9.3.0/include:2;' export 'CPATH_modshare; CPPFLAGS_modshare=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:-I/cosma/local/gcc/9.3.0/include:1:-I/cosma/local/Python/3.6.5/include/python3.6m/:1;' export 'CPPFLAGS_modshare; LD_LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1:/cosma/local/Python/3.6.5/lib:1;' export 'LD_LIBRARY_PATH_modshare; MPI_CXX_OPTIONS=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/\' '-I/cosma/local/Python/3.6.5/include/python3.6m/\' '-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_CXX_OPTIONS; _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/tools/python/3.6.5:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=llvm/10.0.1:1:python/3.6.5:1:gnu_comp/9.3.0:1;' export 'LOADEDMODULES_modshare; MPI_CXX_OPTIONS_modshare=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:-I/cosma/local/gcc/9.3.0/include:1:-I/cosma/local/Python/3.6.5/include/python3.6m/:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1;' export 'MPI_CXX_OPTIONS_modshare; PATH=/cosma/local/Python/3.6.5/bin:/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin;' export 'PATH; MPI_CC_OPTIONS=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/\' '-I/cosma/local/Python/3.6.5/include/python3.6m/\' '-I/cosma/local/gcc/9.3.0/include\' '-L/cosma/local/gcc/9.3.0/lib64/\' '-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/;' export 'MPI_CC_OPTIONS; OMPI_CPPFLAGS_modshare=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:-I/cosma/local/gcc/9.3.0/include:1:-I/cosma/local/Python/3.6.5/include/python3.6m/:1;' export 'OMPI_CPPFLAGS_modshare; PYTHON_LIBRARIES=/cosma/local/Python/3.6.5/lib/libpython3.6m.so;' export 'PYTHON_LIBRARIES; PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/cosma/local/Python/3.6.5/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1;' export 'PATH_modshare; test' '0;' ++ CPATH=/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:/cosma/local/Python/3.6.5/include/python3.6m/:/cosma/local/gcc/9.3.0/include ++ export CPATH ++ LD_LIBRARY_PATH=/cosma/local/gcc/7.3.0/lib64/:/cosma/local/Python/3.6.5/lib ++ export LD_LIBRARY_PATH ++ CPPFLAGS='-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include' ++ export CPPFLAGS ++ MANPATH=/cosma/local/Python/3.6.5/share/man:/cosma/local/gcc/9.3.0/share/man:/cosma/local/Modules/default/share/man:/usr/man:/usr/share/man:/usr/local/man:/usr/local/share/man:/usr/X11R6/man:/opt/man ++ export MANPATH ++ _LMFILES_=/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:/cosma/local/Modules/modulefiles/tools/python/3.6.5 ++ export _LMFILES_ ++ LOADEDMODULES=gnu_comp/9.3.0:llvm/10.0.1:python/3.6.5 ++ export LOADEDMODULES ++ CMAKE_INCLUDE_PATH_modshare=/cosma/local/Python/3.6.5/include/python3.6m/:1:/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:/cosma/local/gcc/9.3.0/include:1 ++ export CMAKE_INCLUDE_PATH_modshare ++ MANPATH_modshare=/cosma/local/gcc/9.3.0/share/man:1:/usr/man:1:/usr/local/share/man:1:/cosma/local/Modules/default/share/man:1:/usr/X11R6/man:1:/opt/man:1:/usr/share/man:1:/usr/local/man:1:/cosma/local/Python/3.6.5/share/man:1 ++ export MANPATH_modshare ++ PKG_CONFIG_PATH=/cosma/local/Python/3.6.5/lib/pkgconfig ++ export PKG_CONFIG_PATH ++ OMPI_CPPFLAGS='-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include' ++ export OMPI_CPPFLAGS ++ PYTHON_MAJMIN=3.6 ++ export PYTHON_MAJMIN ++ PKG_CONFIG_PATH_modshare=/cosma/local/Python/3.6.5/lib/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ CMAKE_INCLUDE_PATH=/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:/cosma/local/Python/3.6.5/include/python3.6m/:/cosma/local/gcc/9.3.0/include ++ export CMAKE_INCLUDE_PATH ++ MPI_CC_OPTIONS_modshare=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:-I/cosma/local/gcc/9.3.0/include:1:-I/cosma/local/Python/3.6.5/include/python3.6m/:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_CC_OPTIONS_modshare ++ PYTHON_INCLUDE_PATH=/cosma/local/Python/3.6.5/include/python3.6m ++ export PYTHON_INCLUDE_PATH ++ CPATH_modshare=/cosma/local/Python/3.6.5/include/python3.6m/:1:/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:/cosma/local/gcc/9.3.0/include:2 ++ export CPATH_modshare ++ CPPFLAGS_modshare=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:-I/cosma/local/gcc/9.3.0/include:1:-I/cosma/local/Python/3.6.5/include/python3.6m/:1 ++ export CPPFLAGS_modshare ++ LD_LIBRARY_PATH_modshare=/cosma/local/gcc/7.3.0/lib64/:1:/cosma/local/Python/3.6.5/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ MPI_CXX_OPTIONS='-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_CXX_OPTIONS ++ _LMFILES__modshare=/cosma/local/Modules/modulefiles/compilers/llvm/10.0.1:1:/cosma/local/Modules/modulefiles/tools/python/3.6.5:1:/cosma/local/Modules/modulefiles/compilers/gnu_comp/9.3.0:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=llvm/10.0.1:1:python/3.6.5:1:gnu_comp/9.3.0:1 ++ export LOADEDMODULES_modshare ++ MPI_CXX_OPTIONS_modshare=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:-I/cosma/local/gcc/9.3.0/include:1:-I/cosma/local/Python/3.6.5/include/python3.6m/:1:-L/cosma/local/gcc/9.3.0/lib64/:1:-Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/:1 ++ export MPI_CXX_OPTIONS_modshare ++ PATH=/cosma/local/Python/3.6.5/bin:/cosma/local/llvm/llvm-10.0.1/bin:/cosma/local/gcc/9.3.0/bin:/cosma/local/Modules/default/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin ++ export PATH ++ MPI_CC_OPTIONS='-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -L/cosma/local/gcc/9.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/9.3.0/lib64/' ++ export MPI_CC_OPTIONS ++ OMPI_CPPFLAGS_modshare=-I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/:1:-I/cosma/local/gcc/9.3.0/include:1:-I/cosma/local/Python/3.6.5/include/python3.6m/:1 ++ export OMPI_CPPFLAGS_modshare ++ PYTHON_LIBRARIES=/cosma/local/Python/3.6.5/lib/libpython3.6m.so ++ export PYTHON_LIBRARIES ++ PATH_modshare=/cosma/local/Modules/default/bin:1:/usr/sbin:1:/usr/bin:1:/cosma/local/Python/3.6.5/bin:1:/usr/local/sbin:1:/cosma/local/llvm/llvm-10.0.1/bin:1:/cosma/local/gcc/9.3.0/bin:1:/usr/local/bin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + '[' -n '' ']' + unset _mlre _mlv _mlrv _mlIFS _mlshdbg + return 0 + export CLANG_FORMAT_CMD=clang-format + CLANG_FORMAT_CMD=clang-format + git clean -fdx Removing Makefile Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing config.guess Removing config.hpp Removing config.hpp.in Removing config.log Removing config.status Removing config.sub Removing configure Removing depcomp Removing install-sh Removing libtool Removing ltmain.sh Removing m4/libtool.m4 Removing m4/ltoptions.m4 Removing m4/ltsugar.m4 Removing m4/ltversion.m4 Removing m4/lt~obsolete.m4 Removing missing Removing src/.deps/ Removing src/Makefile Removing src/Makefile.in Removing src/csds_version.hpp Removing stamp-h1 Removing test-driver Removing tests/.deps/ Removing tests/Makefile Removing tests/Makefile.in Removing tests/testHashmap.bin Removing tests/test_header_0000.dump Removing tests/test_reader_0000.dump Removing tests/test_reader_0000_0000.index Removing tests/test_reader_0000_0001.index Removing tests/test_reader_0000_0002.index Removing tests/test_reader_0000_0003.index Removing tests/test_reader_0000_0004.index Removing tests/testvr_0000.dump Removing tests/testvr_0000_0000.index Removing tests/testvr_0000_0001.index Removing tests/testvr_0000_0002.index Removing tests/testvr_0000_0003.index Removing tests/testvr_0000_0004.index + ./autogen.sh libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:83: installing './config.guess' configure.ac:83: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' + ./configure --with-python checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable debugging... no checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether /cosma/local/gcc/9.3.0/bin/g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of /cosma/local/gcc/9.3.0/bin/g++... gcc3 checking whether /cosma/local/gcc/9.3.0/bin/g++ understands -c and -o together... yes checking for /cosma/local/gcc/9.3.0/bin/g++ option to support OpenMP... -fopenmp checking for C++ compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C++ compiler version... 9.3.0 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for gcc... /cosma/local/gcc/9.3.0/bin/gcc checking whether we are using the GNU C compiler... yes checking whether /cosma/local/gcc/9.3.0/bin/gcc accepts -g... yes checking for /cosma/local/gcc/9.3.0/bin/gcc option to accept ISO C89... none needed checking dependency style of /cosma/local/gcc/9.3.0/bin/gcc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /cosma/local/gcc/9.3.0/bin/gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /cosma/local/gcc/9.3.0/bin/gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... /cosma/local/gcc/9.3.0/bin/gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /cosma/local/gcc/9.3.0/bin/gcc supports -fno-rtti -fno-exceptions... no checking for /cosma/local/gcc/9.3.0/bin/gcc option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/9.3.0/bin/gcc PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/9.3.0/bin/gcc static flag -static works... no checking if /cosma/local/gcc/9.3.0/bin/gcc supports -c -o file.o... yes checking if /cosma/local/gcc/9.3.0/bin/gcc supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/9.3.0/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... /cosma/local/gcc/9.3.0/bin/g++ -E checking for ld used by /cosma/local/gcc/9.3.0/bin/g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /cosma/local/gcc/9.3.0/bin/g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /cosma/local/gcc/9.3.0/bin/g++ option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/9.3.0/bin/g++ PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/9.3.0/bin/g++ static flag -static works... no checking if /cosma/local/gcc/9.3.0/bin/g++ supports -c -o file.o... yes checking if /cosma/local/gcc/9.3.0/bin/g++ supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/9.3.0/bin/g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether make sets $(MAKE)... (cached) yes checking for ANSI C header files... (cached) yes checking for sqrt in -lm... yes checking for a Python interpreter with version >= 3... python3 checking for python3... /cosma/local/Python/3.6.5/bin/python3 checking for python3 version... 3.6 checking for python3 platform... linux checking for python3 script directory... ${prefix}/lib/python3.6/site-packages checking for python3 extension module directory... ${exec_prefix}/lib/python3.6/site-packages checking for python3.6-config... /cosma/local/Python/3.6.5/bin/python3.6-config checking python include flags... checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking c_asm.h usability... no checking c_asm.h presence... no checking for c_asm.h... no checking intrinsics.h usability... no checking intrinsics.h presence... no checking for intrinsics.h... no checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking whether C++ compiler accepts -Wstrict-prototypes... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.hpp config.status: executing depfiles commands config.status: executing libtool commands ------- Summary -------- CSDS v.2.0 Compiler : /cosma/local/gcc/9.3.0/bin/g++ - vendor : gnu - version : 9.3.0 - flags : -Wall -Wextra -Wshadow -Werror -fopenmp OpenMP enabled : yes Python enabled : yes - includes : -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m - libraries : -L/cosma/local/Python/3.6.5/lib -lpython3.6m -lpthread -ldl -lutil -lm -Xlinker -export-dynamic Debugging checks : no Coverage enabled : no Sanitizer enabled : no ------------------------ + make -j 2 make all-recursive make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' Making all in src make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[2]: Circular csds_version.hpp <- csds_version.hpp dependency dropped. sed -e "s,@major_version \@,2," \ -e "s,@minor_version \@,0," csds_version.hpp.in > csds_version.hpp make all-am make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c -o libcsds_la-csds_header.lo `test -f 'csds_header.cpp' || echo './'`csds_header.cpp /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_mapped_file.lo -MD -MP -MF .deps/libcsds_la-csds_mapped_file.Tpo -c -o libcsds_la-csds_mapped_file.lo `test -f 'csds_mapped_file.cpp' || echo './'`csds_mapped_file.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_header.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_mapped_file.lo -MD -MP -MF .deps/libcsds_la-csds_mapped_file.Tpo -c csds_mapped_file.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_mapped_file.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_mapped_file.lo -MD -MP -MF .deps/libcsds_la-csds_mapped_file.Tpo -c csds_mapped_file.cpp -o libcsds_la-csds_mapped_file.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include 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-Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_clocks.lo -MD -MP -MF .deps/libcsds_la-csds_clocks.Tpo -c -o libcsds_la-csds_clocks.lo `test -f 'csds_clocks.cpp' || echo './'`csds_clocks.cpp mv -f .deps/libcsds_la-csds_hashmap.Tpo .deps/libcsds_la-csds_hashmap.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c -o libcsds_la-csds_parser.lo `test -f 'csds_parser.cpp' || echo './'`csds_parser.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. 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.deps/libcsds_la-csds_parser.Tpo -c csds_parser.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_parser.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_clocks.lo -MD -MP -MF .deps/libcsds_la-csds_clocks.Tpo -c csds_clocks.cpp -o libcsds_la-csds_clocks.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_clocks.Tpo .deps/libcsds_la-csds_clocks.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c -o libcsds_la-csds_part_type.lo `test -f 'csds_part_type.cpp' || echo './'`csds_part_type.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_part_type.o libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.cpp -o libcsds_la-csds_part_type.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_part_type.Tpo .deps/libcsds_la-csds_part_type.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_python_wrapper.lo -MD -MP -MF .deps/libcsds_la-csds_python_wrapper.Tpo -c -o libcsds_la-csds_python_wrapper.lo `test -f 'csds_python_wrapper.cpp' || echo './'`csds_python_wrapper.cpp libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c csds_parser.cpp -o libcsds_la-csds_parser.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_la-csds_python_wrapper.lo -MD -MP -MF .deps/libcsds_la-csds_python_wrapper.Tpo -c csds_python_wrapper.cpp -fPIC -DPIC -o .libs/libcsds_la-csds_python_wrapper.o csds_python_wrapper.cpp:1023:6: error: ISO C++ forbids converting a string constant to 'char*' [-Werror=write-strings] 1023 | {"gas", T_OBJECT_EX, offsetof(PyObjectReader, part_reader), READONLY}, | ^~~~~ csds_python_wrapper.cpp:1024:6: error: ISO C++ forbids converting a string constant to 'char*' [-Werror=write-strings] 1024 | {"dark_matter", T_OBJECT_EX, | ^~~~~~~~~~~~~ csds_python_wrapper.cpp:1027:6: error: ISO C++ forbids converting a string constant to 'char*' [-Werror=write-strings] 1027 | {"dark_matter_background", T_OBJECT_EX, | ^~~~~~~~~~~~~~~~~~~~~~~~ csds_python_wrapper.cpp:1030:6: error: ISO C++ forbids converting a string constant to 'char*' [-Werror=write-strings] 1030 | {"sinks", T_OBJECT_EX, | ^~~~~~~ csds_python_wrapper.cpp:1033:6: error: ISO C++ forbids converting a string constant to 'char*' [-Werror=write-strings] 1033 | {"stars", T_OBJECT_EX, | ^~~~~~~ csds_python_wrapper.cpp:1036:6: error: ISO C++ forbids converting a string constant to 'char*' [-Werror=write-strings] 1036 | {"black_holes", T_OBJECT_EX, | ^~~~~~~~~~~~~ mv -f .deps/libcsds_la-csds_parser.Tpo .deps/libcsds_la-csds_parser.Plo /bin/sh ../libtool --tag=CXX --mode=compile /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c -o libcsds_writer_la-csds_logfile_writer.lo `test -f 'csds_logfile_writer.cpp' || echo './'`csds_logfile_writer.cpp make[3]: Circular csds_version.hpp <- csds_version.hpp dependency dropped. libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.cpp -fPIC -DPIC -o .libs/libcsds_writer_la-csds_logfile_writer.o cc1plus: all warnings being treated as errors make[3]: *** [libcsds_la-csds_python_wrapper.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... libtool: compile: /cosma/local/gcc/9.3.0/bin/g++ -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.6.5/lib/python3.6/site-packages/numpy/core/include/ -I/cosma/local/Python/3.6.5/include/python3.6m/ -I/cosma/local/gcc/9.3.0/include -fopenmp -I/cosma/local/Python/3.6.5/include/python3.6m -I/cosma/local/Python/3.6.5/include/python3.6m -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.cpp -o libcsds_writer_la-csds_logfile_writer.o >/dev/null 2>&1 mv -f .deps/libcsds_writer_la-csds_logfile_writer.Tpo .deps/libcsds_writer_la-csds_logfile_writer.Plo make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[2]: *** [all] Error 2 make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace' make: *** [all] Error 2 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (No OpenMP) Stage "No OpenMP" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Debugging/Coverage) Stage "Debugging/Coverage" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Intel) Stage "Intel" skipped due to earlier failure(s) [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 2 Finished: FAILURE