home.md

-Scripts for different machines:
-
-* [COSMA modules and run scripts](COSMA-build)
-* [COSMA DDT debugger](DDT-debugger-on-Cosma)
-* [ALICE Leiden](ALICE_build)
-* [HLRS HAWK](HLRS-HAWK-(AMD))
-* [TGCC Irene](TGCC Irene)
-* [NCI Gadi](NCI Gadi)
-* [Stampede2](stampede2)
-* [JUQUEEN parameters](BlueGene)
-* [Salomon parameters](Ostrava_salomon)
-* [SuperMUC parameters](SuperMUC)
-* [Swindon Broadwell machine](Swindon_broadwell)
-* [Piz Daint Cray system](Piz_Daint)
-* [Hamilton system](hamilton slurm script)
-* [Deneb at EPFL](Deneb) (outdated)
-* [ARCHER KNL](Archer knl)
-* [Cambridge Peta4-Skylake (CDS3)](CDS3-build)
-* [Cartesius Netherlands](Cartesius_build)
-* [VSC-4 Vienna](VSC-4 Vienna)
-* [LUMI Cray system](LUMI)
-
-
-Code presentation (outdated):
- * [Intel HPC DevCon 16 presentation](http://www.intel.com/content/dam/www/public/us/en/documents/presentation/swift-using-task-based-parallelism.pdf) (Most up-to-date full presentation at this stage)
- * [Galaxy movie](https://www.youtube.com/watch?v=tghH_V2Hq5U)
- * [QuickSched GPU talk](https://drive.google.com/open?id=0B-7nssX3tkJHaVBOWmZQX1picVpOOU5UTzJWOUpWM2tVcF9z)
-
-Code guidelines:
-
-* [Using GCC sanitizer](gcc-sanitizer)
-* [Code formatting](code-formatting)
-* [Using cscope](cscope)
-* [Reverting a merge request](revertmerge)
-* [Plotting the task dependencies](task_dep)
-
-Automated test-suite:
-
-* [Jenkins Builds](jenkinsbuilds)
-* [Creating unit tests](unit-tests)
-* [Code coverage](code coverage)
-
-Hydrodynamics tests:
-
-* [Results of tests in the example suite](hydro-tests)
-* [L1 convergence for some example suite tests](L1-convergence)
-* [Results of MAGMA2 scheme](MAGMA2 test results)
-
-MHD:
- 
- * [MHD schemes implementations](mhd-schemes)
- * [Results of MHD tests](mhd-tests)
-
-Scaling results
-
-* [JUQUEEN](scaling_juqueen)
-* [SWIFT vs. GADGET-2](scaling-vs-gadget2)
-
-Future plans
-
-* [Modules chart](future_modules)
-
-MPI checks
-
-* [Intel MPI flags](intel_mpi_checks)
-
-Cell Interaction Timings
-
-* [Fixed dt Timings](fixdt timings)
-
-Test Pair Vectorisation Results
-
-* [Test Pair Results](vectorisation results)
-* [Test Pair Results (Shuffled Particles)](test pair vectorisation results shuffled particles)
-
-Test 27 Cells Vectorisation Results
-
-* [Test 27 Cells Results](test 27 cells vectorisation results)
-* [Test 27 Cells Results (Shuffled Particles)](test 27 cells vectorisation results shuffled particles)
-
-Timing Vs. Gadget-2
-
-* [Timing Tests](timingvgadget-2)
-* [Swift Timing Plots](swiftefficiency)
-* [Task Cleanup Plots](swift_taskcleanup)
-
-Script to improve ICs
-
-* [Script](improve_ics)
-
-Multi-dt
-
-* [Multi-dt Scaling plots](scaling_plots)
-
-Fixed-dt
-
-* [Fixed-dt Scaling plots](fixed-dt_plots)
-
-Cooling
-
-* [Tests](cooling)
-
-Gravity
-
-* [Several body problem](gravity-tests)
-
-* [Isothermal Halo](isothermal-halo-test)
-
-* [Comparison with ODE solver](comparison-with-ode-solver)
-
-* [Point mass orbit](point-mass-orbit)
-
-Partitioning schemes
-
-* [Partitioning](partitioning)
-
-KNL MPI
-
-* [Placing MPI ranks in SNC-4 mode](knl snc 4 with 4 mpi ranks)
-
-VTune profiling options
-
-* [VTune options list](VTune options)
-
-Broadwell vs Sandy Bridge
-
-* [Scaling Plot](Broadwell vs sandy bridge)
-
-GPUs
-
-* [Profiling with GPUS on Piz Daint](gpu-profiling)
-* [EuroHack17](eurohack)
-
-SWIFT + VELOCIraptor
-
-* [Compile SWIFT with VELOCIraptor](build swift velociraptor on COSMA)
-* [Running SWIFT with VELCOIraptor](Running swift and velociraptor)
-
-Examples of Simulations
- * [Agora Simulations](agora-sim)
-
-FoF memory usage
- * [FoF memory usage](Memory-use-of-the-SWIFT-FoF-implementation)
-
-Task plots
-  * [Task plots for EAGLE z=0.1 25Mpc with full physics](http://icc.dur.ac.uk/~jch/tasks/)
-
-Performance
-  * [DMONLY performance](Dmonly performance)
-
-Logger
+Scripts for different machines:
+
+* [COSMA modules and run scripts](COSMA-build)
+* [COSMA DDT debugger](DDT-debugger-on-Cosma)
+* [ALICE Leiden](ALICE_build)
+* [HLRS HAWK](HLRS-HAWK-(AMD))
+* [TGCC Irene](TGCC Irene)
+* [NCI Gadi](NCI Gadi)
+* [Stampede2](stampede2)
+* [JUQUEEN parameters](BlueGene)
+* [Salomon parameters](Ostrava_salomon)
+* [SuperMUC parameters](SuperMUC)
+* [Swindon Broadwell machine](Swindon_broadwell)
+* [Piz Daint Cray system](Piz_Daint)
+* [Hamilton system](hamilton slurm script)
+* [Deneb at EPFL](Deneb) (outdated)
+* [ARCHER KNL](Archer knl)
+* [Cambridge Peta4-Skylake (CDS3)](CDS3-build)
+* [Cartesius Netherlands](Cartesius_build)
+* [VSC-4 Vienna](VSC-4 Vienna)
+* [LUMI Cray system](LUMI)
+
+
+Code presentation (outdated):
+ * [Intel HPC DevCon 16 presentation](http://www.intel.com/content/dam/www/public/us/en/documents/presentation/swift-using-task-based-parallelism.pdf) (Most up-to-date full presentation at this stage)
+ * [Galaxy movie](https://www.youtube.com/watch?v=tghH_V2Hq5U)
+ * [QuickSched GPU talk](https://drive.google.com/open?id=0B-7nssX3tkJHaVBOWmZQX1picVpOOU5UTzJWOUpWM2tVcF9z)
+
+Code guidelines:
+
+* [Code formatting](code-formatting)
+* [Using cscope](cscope)
+* [Reverting a merge request](revertmerge)
+* [Plotting the task dependencies](task_dep)
+
+Automated test-suite:
+
+* [Jenkins Builds](jenkinsbuilds)
+* [Creating unit tests](unit-tests)
+* [Code coverage](code coverage)
+
+Hydrodynamics tests:
+
+* [Results of tests in the example suite](hydro-tests)
+* [L1 convergence for some example suite tests](L1-convergence)
+* [Results of MAGMA2 scheme](MAGMA2 test results)
+
+MHD:
+ 
+ * [MHD schemes implementations](mhd-schemes)
+ * [Results of MHD tests](mhd-tests)
+
+Scaling results
+
+* [JUQUEEN](scaling_juqueen)
+* [SWIFT vs. GADGET-2](scaling-vs-gadget2)
+
+Future plans
+
+* [Modules chart](future_modules)
+
+MPI checks
+
+* [Intel MPI flags](intel_mpi_checks)
+
+Cell Interaction Timings
+
+* [Fixed dt Timings](fixdt timings)
+
+Test Pair Vectorisation Results
+
+* [Test Pair Results](vectorisation results)
+* [Test Pair Results (Shuffled Particles)](test pair vectorisation results shuffled particles)
+
+Test 27 Cells Vectorisation Results
+
+* [Test 27 Cells Results](test 27 cells vectorisation results)
+* [Test 27 Cells Results (Shuffled Particles)](test 27 cells vectorisation results shuffled particles)
+
+Timing Vs. Gadget-2
+
+* [Timing Tests](timingvgadget-2)
+* [Swift Timing Plots](swiftefficiency)
+* [Task Cleanup Plots](swift_taskcleanup)
+
+Script to improve ICs
+
+* [Script](improve_ics)
+
+Multi-dt
+
+* [Multi-dt Scaling plots](scaling_plots)
+
+Fixed-dt
+
+* [Fixed-dt Scaling plots](fixed-dt_plots)
+
+Cooling
+
+* [Tests](cooling)
+
+Gravity
+
+* [Several body problem](gravity-tests)
+
+* [Isothermal Halo](isothermal-halo-test)
+
+* [Comparison with ODE solver](comparison-with-ode-solver)
+
+* [Point mass orbit](point-mass-orbit)
+
+Partitioning schemes
+
+* [Partitioning](partitioning)
+
+KNL MPI
+
+* [Placing MPI ranks in SNC-4 mode](knl snc 4 with 4 mpi ranks)
+
+VTune profiling options
+
+* [VTune options list](VTune options)
+
+Broadwell vs Sandy Bridge
+
+* [Scaling Plot](Broadwell vs sandy bridge)
+
+GPUs
+
+* [Profiling with GPUS on Piz Daint](gpu-profiling)
+* [EuroHack17](eurohack)
+
+SWIFT + VELOCIraptor
+
+* [Compile SWIFT with VELOCIraptor](build swift velociraptor on COSMA)
+* [Running SWIFT with VELCOIraptor](Running swift and velociraptor)
+
+Examples of Simulations
+ * [Agora Simulations](agora-sim)
+
+FoF memory usage
+ * [FoF memory usage](Memory-use-of-the-SWIFT-FoF-implementation)
+
+Task plots
+  * [Task plots for EAGLE z=0.1 25Mpc with full physics](http://icc.dur.ac.uk/~jch/tasks/)
+
+Performance
+  * [DMONLY performance](Dmonly performance)
+
+Logger
   * [Reader API](logger reader api)
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