output.xmf files are broken

After the merge !121 (merged) the output.xmf files are missing the sections:

<Grid GridType="Collection" CollectionType="Spatial">
<Time Type="Single" Value="0.000000"/>
<Grid Name="Gas" GridType="Uniform">
<Topology TopologyType="Polyvertex" Dimensions="1024128"/>
<Geometry GeometryType="XYZ">
<DataItem Dimensions="1024128 3" NumberType="Double" Precision="8" Format="HDF">output_000.hdf5:/PartType0/Coordinates</DataItem>
</Geometry>

for each output file, can no longer be loaded into paraview.

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