This reverts commit 324bd359 [formerly 78052f0629ab80163631a248a0af9f596d27c4a2].

Conflicts:
	src/engine.c
	src/proxy.c

Reverts unwanted debug output from mpi_fixes branch.


Former-commit-id: f7ee5a97b39c9fd82ec0fe9d5dfa819eb70b128d

This reverts commit decf122a [formerly 70bc02755eb2c0d36163afa582ef8338bb9b042e].

Conflicts:
	src/debug.c
	src/engine.c
	src/engine.h

These were fixes from the paranoid branch.


Former-commit-id: 158c336b03466a33192ba9df5517703185cde5c5

Small changes for clang compatibility

I have made some minor changes (mostly to space.c) so that the code now compiles out of the box with the clang compiler. 

The main change is the removal of nested functions in space.c. They have been replaced by static functions.

See merge request !32

Former-commit-id: 2cd4eaf9f37f79fa04271b6dec78c8be321d5262

Handle disable doxygen configure option

Previously this broke when using the --disable-doxygen-doc option
as detailed in #44.

See merge request !33

Former-commit-id: 840b6991d97b81feacf07cce60fc9e4193da78de

Previously this broke when using the --disable-doxygen-doc option


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Formatting

Fixes issue #42.

See merge request !31

Former-commit-id: e2a519b75c95e0fcf60272765868b67509cfce77

Conflicts:
	src/engine.c
	src/proxy.c
	src/runner.c
	src/scheduler.c
	src/space.c
	src/task.c

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Cleaned out the OpenMP statements

Removed all the OpenMP pragmas, OpenMP functions and header inclusions. Also replaced the associated atomic operations with normal operations.

There might have been some race condition problems in some routines of space.c where some non-atomic operations were performed in critical parts of the code. Not sure whether it was actually a problem.

Closes issue #20.

See merge request !28

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The configure script can now read MPIRUN from environment variables + README update

The configure script can now read MPIRUN from environment variables

See merge request !30

Former-commit-id: 18a08073af738230b2068c35d1116b7b35e59551

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Former-commit-id: 73d0eda9b7af1c979b5505b3734a61ba2c3a6e92

Makes MPIRUN modifiable via an environment variable and not just as an argument to the script. (Also adds documentation with --help)


Former-commit-id: 65ab9098c4fd505a9ad9266791adbd5226c8809b

Allow the mpirun command to be re-define using the MPIRUN environment variable

PRACE seem to call theirs mpirun_xxx

See merge request !29

Former-commit-id: 3a4dc3f7218c8b1d6031fad54891593b683f7f1c

PRACE seem to call theirs mpirun_xxx


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Former-commit-id: dbf79c6373aaf253e7e1898aee5afad68ee30c01

Cleaned out all but 3 omp statements. Might also have corrected a race condition in the space construction.


Former-commit-id: e0b9e6872f5388f09b94489c65869acc28e3eb7c

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Autotools update

Fix problem configuring against HDF5 without CFLAGS and LDFLAGS set.

Fix problem building without MPI support.

Improve the installation documentation.

See merge request !27

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These are needed when the environment CFLAGS do not point at the HDF5 include directory. Use CPPFLAGS as CFLAGS is not set


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