diff --git a/src/debug.c b/src/debug.c
index d2fdf7c124100a87939e83fc302ab701a507805f..2be981175eabe41a8a7e57aec4261a9b38def6ac 100644
--- a/src/debug.c
+++ b/src/debug.c
@@ -38,7 +38,6 @@
#error "Invalid choice of SPH variant"
#endif
-
/**
* @brief Looks for the particle with the given id and prints its information to
*the standard output.
diff --git a/src/hydro/Default/hydro.h b/src/hydro/Default/hydro.h
index cca09937cba4ae246814bf29bb4c05d5c0866685..412a4e4a96281f8c5bf3713b2482abc67ce10362 100644
--- a/src/hydro/Default/hydro.h
+++ b/src/hydro/Default/hydro.h
@@ -31,9 +31,9 @@ __attribute__((always_inline)) INLINE static float hydro_compute_timestep(
const float dt_cfl = 2.f * const_cfl * kernel_gamma * p->h / p->force.v_sig;
/* Limit change in u */
- const float dt_u_change = (p->force.u_dt != 0.0f)
- ? fabsf(const_max_u_change * p->u / p->force.u_dt)
- : FLT_MAX;
+ const float dt_u_change =
+ (p->force.u_dt != 0.0f) ? fabsf(const_max_u_change * p->u / p->force.u_dt)
+ : FLT_MAX;
return fminf(dt_cfl, dt_u_change);
}
@@ -48,7 +48,8 @@ __attribute__((always_inline)) INLINE static float hydro_compute_timestep(
* @param xp The extended particle data to act upon
*/
__attribute__((always_inline))
-INLINE static void hydro_first_init_part(struct part* p, struct xpart* xp) {}
+ INLINE static void hydro_first_init_part(struct part* p, struct xpart* xp) {
+}
/**
* @brief Prepares a particle for the density calculation.
@@ -106,8 +107,8 @@ __attribute__((always_inline))
* @param xp The extended particle data to act upon
* @param time The current time
*/
-__attribute__((always_inline))
-INLINE static void hydro_prepare_force(struct part* p, struct xpart* xp, float time) {
+__attribute__((always_inline)) INLINE static void hydro_prepare_force(
+ struct part* p, struct xpart* xp, float time) {
/* Some smoothing length multiples. */
const float h = p->h;
@@ -206,15 +207,13 @@ __attribute__((always_inline)) INLINE static void hydro_predict_extra(
__attribute__((always_inline))
INLINE static void hydro_end_force(struct part* p) {}
-
-
/**
* @brief Kick the additional variables
*
* @param p The particle to act upon
*/
__attribute__((always_inline))
- INLINE static void hydro_kick_extra(struct part* p, float dt) {}
+ INLINE static void hydro_kick_extra(struct part* p, float dt) {}
/**
* @brief Converts hydro quantity of a particle
diff --git a/src/hydro/Gadget2/hydro.h b/src/hydro/Gadget2/hydro.h
index 2236ab6955839ae3281fe39786d371db5644799c..b25879af4ccfa5ee4da890abb5e371e57ce84409 100644
--- a/src/hydro/Gadget2/hydro.h
+++ b/src/hydro/Gadget2/hydro.h
@@ -28,9 +28,9 @@ __attribute__((always_inline)) INLINE static float hydro_compute_timestep(
struct part* p, struct xpart* xp) {
/* Acceleration */
- float ac = sqrtf(p->a_hydro[0] * p->a_hydro[0] +
- p->a_hydro[1] * p->a_hydro[1] +
- p->a_hydro[2] * p->a_hydro[2]);
+ float ac =
+ sqrtf(p->a_hydro[0] * p->a_hydro[0] + p->a_hydro[1] * p->a_hydro[1] +
+ p->a_hydro[2] * p->a_hydro[2]);
ac = fmaxf(ac, 1e-30);
const float dt_accel = sqrtf(2.f); // MATTHIEU
@@ -51,7 +51,8 @@ __attribute__((always_inline)) INLINE static float hydro_compute_timestep(
* @param xp The extended particle data to act upon
*/
__attribute__((always_inline))
-INLINE static void hydro_first_init_part(struct part* p, struct xpart* xp) {}
+ INLINE static void hydro_first_init_part(struct part* p, struct xpart* xp) {
+}
/**
* @brief Prepares a particle for the density calculation.
@@ -103,7 +104,7 @@ __attribute__((always_inline))
p->density.wcount_dh *= ih * (4.0f / 3.0f * M_PI * kernel_gamma3);
const float irho = 1.f / p->rho;
-
+
/* Compute the derivative term */
p->rho_dh = 1.f / (1.f + 0.33333333f * p->h * p->rho_dh * irho);
@@ -125,14 +126,13 @@ __attribute__((always_inline))
* @param xp The extended particle data to act upon
* @param time The current time
*/
-__attribute__((always_inline))
-INLINE static void hydro_prepare_force(struct part* p, struct xpart* xp, float time) {
+__attribute__((always_inline)) INLINE static void hydro_prepare_force(
+ struct part* p, struct xpart* xp, float time) {
/* Compute the norm of the curl */
p->force.curl_v = sqrtf(p->density.rot_v[0] * p->density.rot_v[0] +
- p->density.rot_v[1] * p->density.rot_v[1] +
- p->density.rot_v[2] * p->density.rot_v[2]);
-
+ p->density.rot_v[1] * p->density.rot_v[1] +
+ p->density.rot_v[2] * p->density.rot_v[2]);
/* Compute the pressure */
const float dt = time - 0.5f * (p->t_begin + p->t_end);
@@ -202,7 +202,6 @@ __attribute__((always_inline))
(const_hydro_gamma - 1.f) * powf(p->rho, -(const_hydro_gamma - 1.f));
}
-
/**
* @brief Kick the additional variables
*
@@ -211,16 +210,15 @@ __attribute__((always_inline))
* @param dt The time-step for this kick
* @param half_dt The half time-step for this kick
*/
-__attribute__((always_inline))
- INLINE static void hydro_kick_extra(struct part* p, struct xpart* xp,
- float dt, float half_dt) {
+__attribute__((always_inline)) INLINE static void hydro_kick_extra(
+ struct part* p, struct xpart* xp, float dt, float half_dt) {
/* Do not decrease the entropy (temperature) by more than a factor of 2*/
const float entropy_change = p->entropy_dt * dt;
if (entropy_change > -0.5f * p->entropy)
p->entropy += entropy_change;
else
- p->entropy *= 0.5f;
+ p->entropy *= 0.5f;
/* Do not 'overcool' when timestep increases */
if (p->entropy + 0.5f * p->entropy_dt * dt < 0.5f * p->entropy)
@@ -238,5 +236,5 @@ __attribute__((always_inline))
INLINE static void hydro_convert_quantities(struct part* p) {
p->entropy = (const_hydro_gamma - 1.f) * p->entropy *
- powf(p->rho, -(const_hydro_gamma - 1.f));
+ powf(p->rho, -(const_hydro_gamma - 1.f));
}
diff --git a/src/hydro/Gadget2/hydro_debug.h b/src/hydro/Gadget2/hydro_debug.h
index d8ee7c161c8f7a4d9135bd37d739138970cc3bf2..5ac83e227c3b59595a045ea9fb0474671ee5df92 100644
--- a/src/hydro/Gadget2/hydro_debug.h
+++ b/src/hydro/Gadget2/hydro_debug.h
@@ -29,9 +29,8 @@ __attribute__((always_inline))
"v_sig=%e dh/dt=%.3e t_begin=%.3e, t_end=%.3e\n",
p->x[0], p->x[1], p->x[2], p->v[0], p->v[1], p->v[2], xp->v_full[0],
xp->v_full[1], xp->v_full[2], p->a_hydro[0], p->a_hydro[1], p->a_hydro[2],
- p->h, (int)p->density.wcount, p->mass, p->rho_dh, p->rho, p->force.pressure,
- p->entropy, p->entropy_dt, p->force.soundspeed,
- p->div_v, p->force.curl_v, p->density.rot_v[0],
- p->density.rot_v[1], p->density.rot_v[2], p->force.v_sig, p->h_dt,
- p->t_begin, p->t_end);
+ p->h, (int)p->density.wcount, p->mass, p->rho_dh, p->rho,
+ p->force.pressure, p->entropy, p->entropy_dt, p->force.soundspeed,
+ p->div_v, p->force.curl_v, p->density.rot_v[0], p->density.rot_v[1],
+ p->density.rot_v[2], p->force.v_sig, p->h_dt, p->t_begin, p->t_end);
}
diff --git a/src/hydro/Gadget2/hydro_part.h b/src/hydro/Gadget2/hydro_part.h
index 777495035881d295b1958c8e62db19dd8c0c9723..41898513aadddf7a7f7f5f6acb7516af6ecad1f4 100644
--- a/src/hydro/Gadget2/hydro_part.h
+++ b/src/hydro/Gadget2/hydro_part.h
@@ -17,7 +17,6 @@
*
******************************************************************************/
-
/* Extra particle data not needed during the SPH loops over neighbours. */
struct xpart {
@@ -26,7 +25,7 @@ struct xpart {
/* Velocity at the last full step. */
float v_full[3];
-
+
} __attribute__((aligned(xpart_align)));
/* Data of a single particle. */
@@ -65,43 +64,42 @@ struct part {
/* Entropy time derivative */
float entropy_dt;
-
+
/* Particle mass. */
float mass;
-
- union{
-
+
+ union {
+
struct {
/* Number of neighbours */
float wcount;
-
+
/* Number of neighbours spatial derivative */
float wcount_dh;
-
+
/* Velocity curl components */
float rot_v[3];
-
+
} density;
struct {
-
+
/* Velocity curl norm*/
float curl_v;
/* Signal velocity */
float v_sig;
-
+
/* Particle pressure */
float pressure;
/* Particle sound speed */
float soundspeed;
-
+
} force;
-
};
-
+
/* Velocity divergence */
float div_v;
diff --git a/src/hydro/Minimal/hydro_iact.h b/src/hydro/Minimal/hydro_iact.h
index b8a21b4bb0720a5889a8f8dabbb42714bf285327..6afb9d8d38a4fc7f1d38b7286720ddb7f3c51ab4 100644
--- a/src/hydro/Minimal/hydro_iact.h
+++ b/src/hydro/Minimal/hydro_iact.h
@@ -28,8 +28,8 @@
/**
* @brief Minimal conservative implementation of SPH
*
- * The thermal variable is the internal energy (u). No viscosity nor
- * thermal conduction terms are implemented.
+ * The thermal variable is the internal energy (u). No viscosity nor
+ * thermal conduction terms are implemented.
*/
/**
diff --git a/src/serial_io.c b/src/serial_io.c
index ebb7eee68882766c5f550cda7feee1d9b68ab5cc..481a82c4977310aa28b94bfc543f1acbf8b90f35 100644
--- a/src/serial_io.c
+++ b/src/serial_io.c
@@ -241,10 +241,10 @@ void prepareArray(hid_t grp, char* fileName, FILE* xmfFile, char* name,
*
* Calls #error() if an error occurs.
*/
-void writeArrayBackEnd(hid_t grp, char* fileName, FILE* xmfFile, char* name,
- enum DATA_TYPE type, int N, int dim, long long N_total,
- int mpi_rank, long long offset, char* part_c,
- struct UnitSystem* us,
+void writeArrayBackEnd(hid_t grp, char* fileName, FILE* xmfFile, char* name,
+ enum DATA_TYPE type, int N, int dim, long long N_total,
+ int mpi_rank, long long offset, char* part_c,
+ struct UnitSystem* us,
enum UnitConversionFactor convFactor) {
hid_t h_data = 0, h_err = 0, h_memspace = 0, h_filespace = 0;
@@ -259,11 +259,10 @@ void writeArrayBackEnd(hid_t grp, char* fileName, FILE* xmfFile, char* name,
/* message("Writing '%s' array...", name); */
/* Prepare the arrays in the file */
- if(mpi_rank == 0)
- prepareArray(grp, fileName, xmfFile, name, type, N_total, dim,
- us, convFactor);
+ if (mpi_rank == 0)
+ prepareArray(grp, fileName, xmfFile, name, type, N_total, dim, us,
+ convFactor);
-
/* Allocate temporary buffer */
temp = malloc(N * dim * sizeOfType(type));
if (temp == NULL) error("Unable to allocate memory for temporary buffer");
@@ -359,9 +358,9 @@ void writeArrayBackEnd(hid_t grp, char* fileName, FILE* xmfFile, char* name,
*/
#define writeArray(grp, fileName, xmfFile, name, type, N, dim, part, N_total, \
mpi_rank, offset, field, us, convFactor) \
- writeArrayBackEnd(grp, fileName, xmfFile, name, type, N, dim, N_total, \
- mpi_rank, offset, (char*)(&(part[0]).field), \
- us, convFactor)
+ writeArrayBackEnd(grp, fileName, xmfFile, name, type, N, dim, N_total, \
+ mpi_rank, offset, (char*)(&(part[0]).field), us, \
+ convFactor)
/* Import the right hydro definition */
#include "hydro_io.h"
@@ -639,8 +638,8 @@ void write_output_serial(struct engine* e, struct UnitSystem* us, int mpi_rank,
error("Error while opening particle group on rank %d.\n", mpi_rank);
/* Write particle fields from the particle structure */
- hydro_write_particles(h_grp, fileName, xmfFile, N, N_total, mpi_rank, offset,
- parts, us);
+ hydro_write_particles(h_grp, fileName, xmfFile, N, N_total, mpi_rank,
+ offset, parts, us);
/* Close particle group */
H5Gclose(h_grp);