Added James Willis' Parco 2017 paper.

theory/Papers/Parco_2017/references.bib

+@article {ref:PG_cell_orientations,
+  author = {Gonnet, Pedro},
+  title = {A simple algorithm to accelerate the computation of non-bonded interactions in cell-based molecular dynamics simulations},
+  journal = {Journal of Computational Chemistry},
+  volume = {28},
+  number = {2},
+  publisher = {Wiley Subscription Services, Inc., A Wiley Company},
+  issn = {1096-987X},
+  url = {http://dx.doi.org/10.1002/jcc.20563},
+  doi = {10.1002/jcc.20563},
+  pages = {570--573},
+  keywords = {molecular dynamics, cell list, neighbor list},
+  year = {2007},
+}
+
+@article{ref:Verlet_list,
+  title = {Computer "Experiments" on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules},
+  author = {Verlet, Loup},
+  journal = {Phys. Rev.},
+  volume = {159},
+  issue = {1},
+  pages = {98--103},
+  numpages = {0},
+  year = {1967},
+  month = {Jul},
+  publisher = {American Physical Society},
+  doi = {10.1103/PhysRev.159.98},
+  url = {https://link.aps.org/doi/10.1103/PhysRev.159.98}
+}
+
+@article{ref:Cell_list,
+title = "New method for searching for neighbors in molecular dynamics computations",
+journal = "Journal of Computational Physics",
+volume = "13",
+number = "3",
+pages = "430 - 432",
+year = "1973",
+note = "",
+issn = "0021-9991",
+doi = "http://dx.doi.org/10.1016/0021-9991(73)90046-6",
+url = "http://www.sciencedirect.com/science/article/pii/0021999173900466",
+author = "B Quentrec and C Brot",
+}
+
+@book{ref:Cell_linked_list,
+  title={Computer simulation of liquids},
+  author={Allen, M.P. and Tildesley, D.J.},
+  isbn={9780198553755},
+  lccn={87001555},
+  series={Oxford science publications},
+  url={https://books.google.co.uk/books?id=ibURAQAAIAAJ},
+  year={1987},
+  publisher={Clarendon Press}
+}
+
+@inproceedings{ref:SWIFT_PASC,
+ author = {Schaller, Matthieu and Gonnet, Pedro and Chalk, Aidan B. G. and Draper, Peter W.},
+ title = {SWIFT: Using Task-Based Parallelism, Fully Asynchronous Communication, and Graph Partition-Based Domain Decomposition for Strong Scaling on More Than 100,000 Cores},
+ booktitle = {Proceedings of the Platform for Advanced Scientific Computing Conference},
+ series = {PASC '16},
+ year = {2016},
+ isbn = {978-1-4503-4126-4},
+ location = {Lausanne, Switzerland},
+ pages = {2:1--2:10},
+ articleno = {2},
+ numpages = {10},
+ url = {http://doi.acm.org/10.1145/2929908.2929916},
+ doi = {10.1145/2929908.2929916},
+ acmid = {2929916},
+ publisher = {ACM},
+ address = {New York, NY, USA},
+ keywords = {Asynchronous data transfer, Cosmology, Extreme scaling, Fluid dynamics, Physics, Smooth Particle Hydrodynamics, Task-based parallelism},
+} 
+
+@article{ref:PG_Pseudo_Verlet_list,
+  author = {Pedro Gonnet},
+  title = {Pseudo-Verlet lists: a new, compact neighbour list representation},
+  journal = {Molecular Simulation},
+  volume = {39},
+  number = {9},
+  pages = {721-727},
+  year = {2013},
+  doi = {10.1080/08927022.2012.762097},
+
+  URL = { 
+http://dx.doi.org/10.1080/08927022.2012.762097
+
+  },
+  eprint = { 
+http://dx.doi.org/10.1080/08927022.2012.762097
+
+  }
+
+}
+
+@article{ref:SIMD_Pair_interactions,
+  author = {{P{\'a}ll}, S. and {Hess}, B.},
+  title = "{A flexible algorithm for calculating pair interactions on SIMD architectures}",
+  journal = {Computer Physics Communications},
+  archivePrefix = "arXiv",
+  eprint = {1306.1737},
+  primaryClass = "physics.comp-ph",
+  year = 2013,
+  month = dec,
+  volume = 184,
+  pages = {2641-2650},
+  doi = {10.1016/j.cpc.2013.06.003},
+  adsurl = {http://adsabs.harvard.edu/abs/2013CoPhC.184.2641P},
+  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+
+@article{ref:Mod_cell_linked_list,
+  title = "Near-neighbor calculations using a modified cell-linked list method",
+  journal = "Computer Physics Communications",
+  volume = "119",
+  number = "2",
+  pages = "135 - 148",
+  year = "1999",
+  note = "",
+  issn = "0010-4655",
+  doi = "http://dx.doi.org/10.1016/S0010-4655(98)00203-3",
+  url = "http://www.sciencedirect.com/science/article/pii/S0010465598002033",
+  author = "William Mattson and Betsy M. Rice",
+
+}
+
+@ARTICLE{ref:SPH_review,
+   author = {{Price}, D.~J.},
+    title = "{Smoothed particle hydrodynamics and magnetohydrodynamics}",
+  journal = {Journal of Computational Physics},
+archivePrefix = "arXiv",
+   eprint = {1012.1885},
+ primaryClass = "astro-ph.IM",
+     year = 2012,
+    month = feb,
+   volume = 231,
+    pages = {759-794},
+      doi = {10.1016/j.jcp.2010.12.011},
+   adsurl = {http://adsabs.harvard.edu/abs/2012JCoPh.231..759P},
+  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
+}
+@article{ref:SWIFT_SIAM,
+  title={Efficient and scalable algorithms for smoothed particle hydrodynamics on hybrid shared/distributed-memory architectures},
+  author={Gonnet, Pedro},
+  journal={SIAM Journal on Scientific Computing},
+  volume={37},
+  number={1},
+  pages={C95--C121},
+  year={2015},
+  publisher={SIAM}
+}
+
+@Article{ref:FFTW,
+  author = 	 {Frigo, Matteo and Johnson, Steven~G.},
+  title = 	 {The Design and Implementation of {FFTW3}},
+  journal = 	 {Proceedings of the IEEE},
+  year = 	 2005,
+  volume =	 93,
+  number =	 2,
+  pages =	 {216--231},
+  note =	 {Special issue on ``Program Generation, Optimization, and Platform Adaptation''}
+}
+
+@article{ref:Luigi_Gadget,
+  author    = {Fabio Baruffa and
+               Luigi Iapichino and
+               Nicolay J. Hammer and
+               Vasileios Karakasis},
+  title     = {Performance Optimisation of Smoothed Particle Hydrodynamics Algorithms
+               for Multi/Many-Core Architectures},
+  journal   = {CoRR},
+  volume    = {abs/1612.06090},
+  year      = {2016},
+  url       = {http://arxiv.org/abs/1612.06090},
+  timestamp = {Wed, 07 Jun 2017 14:40:36 +0200},
+  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/corr/BaruffaIHK16},
+  bibsource = {dblp computer science bibliography, http://dblp.org}
+}
+
+@article{ref:Gadget,
+      author         = "Springel, Volker",
+      title          = "{The Cosmological simulation code GADGET-2}",
+      journal        = "Mon. Not. Roy. Astron. Soc.",
+      volume         = "364",
+      year           = "2005",
+      pages          = "1105-1134",
+      doi            = "10.1111/j.1365-2966.2005.09655.x",
+      eprint         = "astro-ph/0505010",
+      archivePrefix  = "arXiv",
+      primaryClass   = "astro-ph",
+}
+
+@manual{ref:intel_intrinsics_guide,
+	note = "{\url{https://software.intel.com/sites/landingpage/IntrinsicsGuide/}}"
+}
\ No newline at end of file

theory/Papers/Parco_2017/run.sh

+#!/bin/bash
+
+pdflatex main.tex
+bibtex main.aux
+pdflatex main.tex
+pdflatex main.tex