Update all the VR configuration file to use 'Particle_type_for_reference_frames=1'

examples/EAGLE_ICs/EAGLE_100/vrconfig_3dfof_subhalos_SO_hydro.cfg

@@ -16,6 +16,7 @@ Input_includes_wind_particle=0 #include wind particles in hydro input (used by I
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
 Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 

examples/EAGLE_ICs/EAGLE_12/vrconfig_3dfof_subhalos_SO_hydro.cfg

@@ -16,6 +16,7 @@ Input_includes_wind_particle=0 #include wind particles in hydro input (used by I
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
 Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 

examples/EAGLE_ICs/EAGLE_25/vrconfig_3dfof_subhalos_SO_hydro.cfg

@@ -16,6 +16,7 @@ Input_includes_wind_particle=0 #include wind particles in hydro input (used by I
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
 Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 

examples/EAGLE_ICs/EAGLE_50/vrconfig_3dfof_subhalos_SO_hydro.cfg

@@ -16,6 +16,7 @@ Input_includes_wind_particle=0 #include wind particles in hydro input (used by I
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
 Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 

examples/EAGLE_ICs/EAGLE_50_low_res/vrconfig_3dfof_subhalos_SO_hydro.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
 
@@ -16,6 +16,7 @@ Input_includes_wind_particle=0 #include wind particles in hydro input (used by I
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
 Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 
@@ -26,6 +27,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -39,8 +41,8 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-#1 / 0.012
-Metallicity_to_solarmetallicity=83.33
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
 Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
@@ -112,7 +114,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +136,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -203,6 +206,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox

examples/EAGLE_ICs/EAGLE_6/vrconfig_3dfof_subhalos_SO_hydro.cfg

@@ -16,6 +16,7 @@ Input_includes_wind_particle=0 #include wind particles in hydro input (used by I
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
 Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 

examples/SmallCosmoVolume/SmallCosmoVolume_VELOCIraptor/vrconfig_3dfof_subhalos_SO_hydro.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
 
@@ -10,12 +10,13 @@
 HDF_name_convention=6 #HDF SWIFT naming convention
 Input_includes_dm_particle=1 #include dark matter particles in hydro input
 Input_includes_gas_particle=1 #include gas particles in hydro input
-Input_includes_star_particle=1 #include star particles in hydro input
-Input_includes_bh_particle=1 #include bh particles in hydro input
+Input_includes_star_particle=0 #include star particles in hydro input
+Input_includes_bh_particle=0 #include bh particles in hydro input
 Input_includes_wind_particle=0 #include wind particles in hydro input (used by Illustris and moves particle type 0 to particle type 3 when decoupled from hydro forces). Here shown as example
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
 Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 
@@ -26,6 +27,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -39,8 +41,8 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-#1 / 0.012
-Metallicity_to_solarmetallicity=83.33
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
 Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
@@ -112,7 +114,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +136,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -186,6 +189,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox

examples/SmallCosmoVolume/SmallCosmoVolume_hydro/vrconfig_3dfof_subhalos_SO_hydro.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
 
@@ -10,12 +10,13 @@
 HDF_name_convention=6 #HDF SWIFT naming convention
 Input_includes_dm_particle=1 #include dark matter particles in hydro input
 Input_includes_gas_particle=1 #include gas particles in hydro input
-Input_includes_star_particle=1 #include star particles in hydro input
-Input_includes_bh_particle=1 #include bh particles in hydro input
+Input_includes_star_particle=0 #include star particles in hydro input
+Input_includes_bh_particle=0 #include bh particles in hydro input
 Input_includes_wind_particle=0 #include wind particles in hydro input (used by Illustris and moves particle type 0 to particle type 3 when decoupled from hydro forces). Here shown as example
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
 Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 
@@ -26,6 +27,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -39,8 +41,8 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-#1 / 0.012
-Metallicity_to_solarmetallicity=83.33
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
 Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
@@ -112,7 +114,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +136,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -186,6 +189,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox

examples/nIFTyCluster/Baryonic/vrconfig_swift.cfg

 #Configuration file for analysing Hydro
-#runs 3DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
+#runs 6DFOF + substructure algorithm, demands subhalos and FOF halos be self-bound, calculates many properties
 #Units currently set to take in as input, Mpc, 1e10 solar masses, km/s, output in same units
 #To set temporally unique halo ids, alter Snapshot_value=SNAP to appropriate value. Ie: for snapshot 12, change SNAP to 12
-# This is the same as the configuration file used in the EAGLE examples.
 
 ################################
 #input options
@@ -15,8 +14,9 @@ Input_includes_star_particle=0 #include star particles in hydro input
 Input_includes_bh_particle=0 #include bh particles in hydro input
 Input_includes_wind_particle=0 #include wind particles in hydro input (used by Illustris and moves particle type 0 to particle type 3 when decoupled from hydro forces). Here shown as example
 Input_includes_tracer_particle=0 #include tracer particles in hydro input (used by Illustris). Here shown as example
-Input_includes_extradm_particle=1 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
+Input_includes_extradm_particle=0 #include extra dm particles stored in particle type 2 and type 3, useful for zooms
 
+Particle_type_for_reference_frames=1 #use DM particles to define reference frame
 Halo_core_phase_merge_dist=0.25 #merge substructures if difference in dispersion normalised distance is < this value
 Apply_phase_merge_to_host=1 #merge substructures with background if centrally located and phase-distance is small
 
@@ -27,6 +27,7 @@ Mass_input_unit_conversion_to_output_unit=1.0 #default mass unit,
 #assumes input is in 1e10 msun, Mpc and km/s and output units are the same
 Gravity=43.0211349 #for 1e10 Msun, km/s and Mpc
 Hubble_unit=100.0 # assuming units are km/s and Mpc, then value of Hubble in km/s/Mpc
+
 #converting hydro quantities
 Stellar_age_input_is_cosmological_scalefactor=1
 Metallicity_input_unit_conversion_to_output_unit=1.0
@@ -40,8 +41,9 @@ Length_unit_to_kpc=1000.0
 Velocity_to_kms=1.0
 #conversion of output mass units to solar masses
 Mass_to_solarmass=1.0e10
-Metallicity_to_solarmetallicity=1.0
-Star_formation_rate_to_solarmassperyear=1.0
+
+Metallicity_to_solarmetallicity=83.33 #1 / 0.012
+Star_formation_rate_to_solarmassperyear=97.78
 Stellar_age_to_yr=1.0
 #ensures that output is physical and not comoving distances per little h
 Comoving_units=0
@@ -112,7 +114,7 @@ Halo_core_num_loops=8 #number of loops to iteratively search for cores
 Halo_core_loop_ellx_fac=0.75 #how much to change the configuration space linking per iteration
 Halo_core_loop_ellv_fac=1.0 #how much to change the velocity space linking per iteration
 Halo_core_loop_elln_fac=1.2 #how much to change the min number of particles per iteration
-Halo_core_phase_significance=2.0 #how significant a core must be in terms of dispersions (sigma) significance
+Halo_core_phase_significance=5.0 #how significant a core must be in terms of dispersions (sigma) significance
 
 ################################
 #Unbinding options (VELOCIraptor is able to accurately identify tidal debris so particles need not be bound to a structure)
@@ -134,6 +136,7 @@ Frac_pot_ref=1.0
 Min_npot_ref=20
 #reference frame only meaningful if calculating velocity frame using subset of particles in object. Can use radially sorted fraction of particles about minimum potential or centre of mass
 Kinetic_reference_frame_type=0
+#extra options in new unbinding optimisation
 Unbinding_max_unbound_removal_fraction_per_iteration=0.5
 Unbinding_max_unbound_fraction=0.95
 Unbinding_max_unbound_fraction_allowed=0.005
@@ -186,6 +189,4 @@ Snapshot_value=SNAP
 ################################
 #other options
 ################################
-Verbose=0 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox
-
-
+Verbose=1 #how talkative do you want the code to be, 0 not much, 1 a lot, 2 chatterbox