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# This file is part of SWIFT.
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# Copyright (C) 2012 pedro.gonnet@durham.ac.uk.
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#               2016 p.w.draper@durham.ac.uk.
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#
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# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
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#
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# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.

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# Init the project.
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AC_INIT([SWIFT],[0.4.0],[https://gitlab.cosma.dur.ac.uk/swift/swiftsim],,[www.swiftsim.com])
swift_config_flags="$*"
AC_COPYRIGHT
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AC_CONFIG_SRCDIR([src/space.c])
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AC_CONFIG_AUX_DIR([.])
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AM_INIT_AUTOMAKE
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# Add local macro collection.
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AC_CONFIG_MACRO_DIR([m4])

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# Stop default CFLAGS from anyone except the environment.
: ${CFLAGS=""}

# Generate header file.
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AM_CONFIG_HEADER(config.h)

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# Find and test the compiler.
AX_CHECK_ENABLE_DEBUG
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AC_PROG_CC
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AM_PROG_CC_C_O

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# Enable POSIX and platform extension preprocessor macros.
AC_USE_SYSTEM_EXTENSIONS

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# Check for compiler version and vendor.
AX_COMPILER_VENDOR
AX_COMPILER_VERSION

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# Interprocedural optimization support. Needs special handling for linking and
# archiving as well as compilation with Intels, needs to be done before
# libtool is configured (to use correct LD).
AC_ARG_ENABLE([ipo],
   [AS_HELP_STRING([--enable-ipo],
     [Enable interprocedural optimization @<:@no/yes@:>@]
   )],
   [enable_ipo="$enableval"],
   [enable_ipo="no"]
)

if test "$enable_ipo" = "yes"; then
   if test "$ax_cv_c_compiler_vendor" = "intel"; then
      CFLAGS="$CFLAGS -ip -ipo"
      LDFLAGS="$LDFLAGS -ipo"
      : ${AR="xiar"}
      : ${LD="xild"}
      AC_MSG_RESULT([added Intel interprocedural optimization support])
   elif test "$ax_cv_c_compiler_vendor" = "gnu"; then
      CFLAGS="$CFLAGS -flto"
      LDFLAGS="$LDFLAGS -flto"
      AC_MSG_RESULT([added GCC interprocedural optimization support])
   elif test "$ax_cv_c_compiler_vendor" = "clang"; then
      CFLAGS="$CFLAGS -emit-llvm"
      AC_MSG_RESULT([added LLVM interprocedural optimization support])
   else
      AC_MSG_WARN([Compiler does not support interprocedural optimization])
   fi
fi

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# Check for MPI. Need to do this before characterising the compiler (C99 mode),
# as this changes the compiler.
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# We should consider using AX_PROG_CC_MPI to replace AC_PROG_CC when compiling
# whole applications. There are issues with mixing compilers when using this
# macro. See
# http://lists.gnu.org/archive/html/autoconf-archive-maintainers/2011-05/msg00004.html.
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AC_ARG_ENABLE([mpi],
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    [AS_HELP_STRING([--enable-mpi],
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      [Compile with functionality for distributed-memory parallelism using MPI @<:@yes/no@:>@]
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    )],
    [enable_mpi="$enableval"],
    [enable_mpi="yes"]
)
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good_mpi="yes"
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if test "$enable_mpi" = "yes"; then
    AX_MPI([CC="$MPICC" AC_DEFINE(HAVE_MPI, 1, [Define if you have the MPI library.]) ])
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    MPI_LIBRARY="Unknown MPI"
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    # Various MPI implementations require additional libraries when also using
    # threads. Use mpirun (on PATH) as that seems to be only command with
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    # version flag, allow MPIRUN to override for systems that insist on
    # a non-standard name (PRACE).
    : ${MPIRUN='mpirun'}
    if test "$MPIRUN" = "mpirun"; then
       AC_PATH_PROG([MPIRUN],[mpirun],[notfound])
    fi
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    if test "$MPIRUN" = "notfound"; then
       AC_MSG_WARN([Cannot find mpirun command on PATH, thread support may not be correct])
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       enable_mpi="no"
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    else
       # Special options we know about.
       # Intel: -mt_mpi
       # PLATFORM: -lmtmpi
       # OpenMPI: nothing, but library should be built correctly.
       # Set MPI_THREAD_LIBS and add to linker commands as necessary.
       AC_MSG_CHECKING([MPI threads options])
       version=`$MPIRUN -version 2>&1`
       case "$version" in
         *Intel*MPI*)
            MPI_THREAD_LIBS="-mt_mpi"
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            MPI_LIBRARY="Intel MPI"
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            AC_MSG_RESULT([Intel MPI])
         ;;
         *Platform*)
            MPI_THREAD_LIBS="-lmtmpi"
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            MPI_LIBRARY="PLATFORM MPI"
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            AC_MSG_RESULT([PLATFORM MPI])
         ;;
         *"Open MPI"*)
            MPI_THREAD_LIBS=""
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            MPI_LIBRARY="Open MPI"
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            AC_MSG_RESULT([Open MPI])
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            #  OpenMPI should be 1.8.6 or later, if not complain.
            #  Version is last word on first line of -version output.
            revision=`mpirun -version 2>&1 | grep "Open MPI" | awk '{print $NF}'`
            AX_COMPARE_VERSION( $revision, [ge], [1.8.6],,[good_mpi="no"] )
            if test "$good_mpi" = "no"; then
                AC_MSG_WARN([
    Open MPI version should be at least 1.8.6 (is $revision)])
                enable_mpi="yes (but with warning)"
            fi
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         ;;
         *)
            MPI_THREAD_LIBS=""
            AC_MSG_RESULT([unknown])
         ;;
       esac
       AC_SUBST([MPI_THREAD_LIBS])
    fi
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    AC_DEFINE_UNQUOTED([SWIFT_MPI_LIBRARY], ["$MPI_LIBRARY"], [The MPI library name, if known.])
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fi
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AM_CONDITIONAL([HAVEMPI],[test $enable_mpi = "yes"])
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# Indicate that MPIRUN can be modified by an environement variable
AC_ARG_VAR(MPIRUN, Path to the mpirun command if non-standard)

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# Add libtool support (now that CC is defined).
LT_INIT

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# Need C99 and inline support.
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AC_PROG_CC_C99
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AC_C_INLINE

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# If debugging try to show inlined functions.
if test "x$enable_debug" = "xyes"; then
   #  Show inlined functions.
   if test "$ax_cv_c_compiler_vendor" = "gnu"; then
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      # Would like to use -gdwarf and let the compiler pick a good version
      # but that doesn't always work.
      AX_CHECK_COMPILE_FLAG([-gdwarf -fvar-tracking-assignments],
        [inline_EXTRA_FLAGS="-gdwarf -fvar-tracking-assignments"],
        [inline_EXTRA_FLAGS="-gdwarf-2 -fvar-tracking-assignments"])
      CFLAGS="$CFLAGS $inline_EXTRA_FLAGS"
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   elif test "$ax_cv_c_compiler_vendor" = "intel"; then
      CFLAGS="$CFLAGS -debug inline-debug-info"
   fi
fi

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# Check if task debugging is on.
AC_ARG_ENABLE([task-debugging],
   [AS_HELP_STRING([--enable-task-debugging],
     [Store task timing information and generate task dump files @<:@yes/no@:>@]
   )],
   [enable_task_debugging="$enableval"],
   [enable_task_debugging="no"]
)
if test "$enable_task_debugging" = "yes"; then
   AC_DEFINE([SWIFT_DEBUG_TASKS],1,[Enable task debugging])
fi

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# Check if expensive debugging is on.
AC_ARG_ENABLE([debugging-checks],
   [AS_HELP_STRING([--enable-debugging-checks],
     [Activate expensive consistency checks @<:@yes/no@:>@]
   )],
   [enable_debugging_checks="$enableval"],
   [enable_debugging_checks="no"]
)
if test "$enable_debugging_checks" = "yes"; then
   AC_DEFINE([SWIFT_DEBUG_CHECKS],1,[Enable expensive debugging])
fi

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# Define HAVE_POSIX_MEMALIGN if it works.
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AX_FUNC_POSIX_MEMALIGN

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# Only optimize if allowed, otherwise assume user will set CFLAGS as
# appropriate.
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AC_ARG_ENABLE([optimization],
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   [AS_HELP_STRING([--enable-optimization],
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     [Enable compile time optimization flags for host @<:@yes/no@:>@]
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   )],
   [enable_opt="$enableval"],
   [enable_opt="yes"]
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)

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#  Disable vectorisation for known compilers. This switches off optimizations
#  that could be enabled above, so in general should be appended. Slightly odd
#  implementation as want to describe as --disable-vec, but macro is enable
#  (there is no enable action).
AC_ARG_ENABLE([vec],
   [AS_HELP_STRING([--disable-vec],
     [Disable vectorization]
   )],
   [enable_vec="$enableval"],
   [enable_vec="yes"]
)

HAVEVECTORIZATION=0

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if test "$enable_opt" = "yes" ; then
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   # Add code optimisation flags and tuning to host. This is a funny macro
   # that does not like CFLAGS being already set. Work around that as we have
   # at least set it to "", so it is set.
   ac_test_CFLAGS="no"
   old_CFLAGS="$CFLAGS"
   AX_CC_MAXOPT
   ac_test_CFLAGS="yes"
   CFLAGS="$old_CFLAGS $CFLAGS"
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   # Check SSE & AVX support (some overlap with AX_CC_MAXOPT).
   # Don't use the SIMD_FLAGS result with Intel compilers. The -x<code>
   # value from AX_CC_MAXOPT should be sufficient.
   AX_EXT
   if test "$SIMD_FLAGS" != ""; then
       if test "$ax_cv_c_compiler_vendor" != "intel"; then
           CFLAGS="$CFLAGS $SIMD_FLAGS"
       fi
   fi
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   if test "$enable_vec" = "no"; then
      if test "$ax_cv_c_compiler_vendor" = "intel"; then
      	 CFLAGS="$CFLAGS -no-vec -no-simd"
      	 AC_MSG_RESULT([disabled Intel vectorization])
      elif test "$ax_cv_c_compiler_vendor" = "gnu"; then
      	 CFLAGS="$CFLAGS -fno-tree-vectorize"
      	 AC_MSG_RESULT([disabled GCC vectorization])
      elif test "$ax_cv_c_compiler_vendor" = "clang"; then
         CFLAGS="$CFLAGS -fno-vectorize -fno-slp-vectorize"
         AC_MSG_RESULT([disabled clang vectorization])
      else
         AC_MSG_WARN([Do not know how to disable vectorization for this compiler])
      fi
   else
      AC_DEFINE([WITH_VECTORIZATION],1,[Enable vectorization])
      HAVEVECTORIZATION=1
   fi
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fi
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AM_CONDITIONAL([HAVEVECTORIZATION],[test -n "$HAVEVECTORIZATION"])

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# Add address sanitizer options to flags, if requested. Only useful for GCC
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# version 4.8 and later and clang.
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AC_ARG_ENABLE([sanitizer],
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   [AS_HELP_STRING([--enable-sanitizer],
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     [Enable memory error detection using address sanitizer @<:@no/yes@:>@]
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   )],
   [enable_san="$enableval"],
   [enable_san="no"]
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)

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if test "$enable_san" = "yes"; then
   if test "$ax_cv_c_compiler_vendor" = "gnu"; then
      AX_COMPARE_VERSION( $ax_cv_c_compiler_version, [ge], [4.8.0],
                          [enable_san="yes"], [enable_san="no"] )
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   elif test "$ax_cv_c_compiler_vendor" = "clang"; then
      AX_COMPARE_VERSION( $ax_cv_c_compiler_version, [ge], [3.2.0],
                          [enable_san="yes"], [enable_san="no"] )
   fi
   if test "$enable_san" = "yes"; then
      CFLAGS="$CFLAGS -fsanitize=address -fno-omit-frame-pointer"
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      AC_MSG_RESULT([added address sanitizer support])
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   else
      AC_MSG_WARN([Compiler does not support address sanitizer option])
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   fi
fi

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# Autoconf stuff.
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AC_PROG_INSTALL
AC_PROG_MAKE_SET
AC_HEADER_STDC

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# Check for the libraries we will need.
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AC_CHECK_LIB(m,sqrt,,AC_MSG_ERROR(something is wrong with the math library!))

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# Check for pthreads.
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AX_PTHREAD([LIBS="$PTHREAD_LIBS $LIBS" CFLAGS="$CFLAGS $PTHREAD_CFLAGS"
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    CC="$PTHREAD_CC" LDFLAGS="$LDFLAGS $PTHREAD_LIBS $LIBS"],
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    AC_MSG_ERROR([Could not find a working version of
    the pthread library. Make sure you have the library and header files installed
    or use CPPFLAGS and LDFLAGS if the library is installed in a
    non-standard location.]))
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# Check for metis. Note AX_LIB_METIS exists, but cannot be configured
# to be default off (i.e. given no option it tries to locate METIS), so we
# don't use that.
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have_metis="no"
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AC_ARG_WITH([metis],
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    [AS_HELP_STRING([--with-metis=PATH],
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       [root directory where metis is installed @<:@yes/no@:>@]
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    )],
    [],
    [with_metis="no"]
)
if test "x$with_metis" != "xno"; then
   if test "x$with_metis" != "xyes" -a "x$with_metis" != "x"; then
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      METIS_LIBS="-L$with_metis/lib -lmetis"
      METIS_INCS="-I$with_metis/include"
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   else
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      METIS_LIBS="-lmetis"
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      METIS_INCS=""
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   fi
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   have_metis="yes"
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   AC_CHECK_LIB([metis],[METIS_PartGraphKway],
      AC_DEFINE([HAVE_METIS],1,[The metis library appears to be present.]),
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      AC_MSG_ERROR(something is wrong with the metis library!),$METIS_LIBS)
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fi
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AC_SUBST([METIS_LIBS])
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AC_SUBST([METIS_INCS])
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AM_CONDITIONAL([HAVEMETIS],[test -n "$METIS_LIBS"])
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#  Check for tcmalloc a fast malloc that is part of the gperftools.
have_tcmalloc="no"
AC_ARG_WITH([tcmalloc],
   [AS_HELP_STRING([--with-tcmalloc],
      [use tcmalloc library or specify the directory with lib @<:@yes/no@:>@]
   )],
   [with_tcmalloc="$withval"],
   [with_tcmalloc="no"]
)
if test "x$with_tcmalloc" != "xno"; then
   if test "x$with_tcmalloc" != "xyes" && test "x$with_tcmalloc" != "x"; then
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      tclibs="-L$with_tcmalloc -ltcmalloc"
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   else
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      tclibs="-ltcmalloc"
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   fi
   AC_CHECK_LIB([tcmalloc],[tc_cfree],[have_tcmalloc="yes"],[have_tcmalloc="no"],
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                $tclibs)
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   #  Could just have the minimal version.
   if test "$have_tcmalloc" = "no"; then
      if test "x$with_tcmalloc" != "xyes" && test "x$with_tcmalloc" != "x"; then
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         tclibs="-L$with_tcmalloc -ltcmalloc_minimal"
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      else
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         tclibs="-ltcmalloc_minimal"
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      fi
      AC_CHECK_LIB([tcmalloc],[tc_cfree],[have_tcmalloc="yes"],[have_tcmalloc="no"],
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                   $tclibs)
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   fi
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   if test "$have_tcmalloc" = "yes"; then
      TCMALLOC_LIBS="$tclibs"

      # These are recommended for GCC.
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      if test "$ax_cv_c_compiler_vendor" = "gnu"; then
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         CFLAGS="$CFLAGS -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free"
      fi
   else
      TCMALLOC_LIBS=""
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   fi
fi
AC_SUBST([TCMALLOC_LIBS])
AM_CONDITIONAL([HAVETCMALLOC],[test -n "$TCMALLOC_LIBS"])

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#  Check for -lprofiler usually part of the gperftools along with tcmalloc.
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have_profiler="no"
AC_ARG_WITH([profiler],
   [AS_HELP_STRING([--with-profiler],
      [use cpu profiler library or specify the directory with lib @<:@yes/no@:>@]
   )],
   [with_profiler="$withval"],
   [with_profiler="yes"]
)
if test "x$with_profiler" != "xno"; then
   if test "x$with_profiler" != "xyes" && test "x$with_profiler" != "x"; then
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      proflibs="-L$with_profiler -lprofiler"
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   else
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      proflibs="-lprofiler"
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   fi
   AC_CHECK_LIB([profiler],[ProfilerFlush],[have_profiler="yes"],[have_profiler="no"],
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                $proflibs)

   if test "$have_profiler" = "yes"; then
      PROFILER_LIBS="$proflibs"
   else
      PROFILER_LIBS=""
   fi
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fi
AC_SUBST([PROFILER_LIBS])
AM_CONDITIONAL([HAVEPROFILER],[test -n "$PROFILER_LIBS"])
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# Check for HDF5. This is required.
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AX_LIB_HDF5
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if test "$with_hdf5" != "yes"; then
    AC_MSG_ERROR([Could not find a working HDF5 library])
fi

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# We want to know if this HDF5 supports MPI and whether we should use it.
# The default is to use MPI support if it is available, i.e. this is
# a parallel HDF5.
# To do this need to ask the HDF5 compiler about its configuration,
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# -showconfig should have yes/no.
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have_parallel_hdf5="no"
if test "$with_hdf5" = "yes"; then
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    AC_ARG_ENABLE([parallel-hdf5],
       [AS_HELP_STRING([--enable-parallel-hdf5],
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         [Enable parallel HDF5 library MPI functions if available. @<:@yes/no@:>@]
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       )],
       [enable_parallel_hdf5="$enableval"],
       [enable_parallel_hdf5="yes"]
    )

    if test "$enable_parallel_hdf5" = "yes"; then
        AC_MSG_CHECKING([for HDF5 parallel support])
        parallel=`$H5CC -showconfig | grep "Parallel HDF5:" | awk '{print $3}'`
        if test "$parallel" = "yes"; then
            have_parallel_hdf5="yes"
            AC_DEFINE([HAVE_PARALLEL_HDF5],1,[HDF5 library supports parallel access])
        fi
        AC_MSG_RESULT($parallel)
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    fi
fi
AM_CONDITIONAL([HAVEPARALLELHDF5],[test "$have_parallel_hdf5" = "yes"])

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# Check for setaffinity.
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AC_CHECK_FUNC(pthread_setaffinity_np, AC_DEFINE([HAVE_SETAFFINITY],[1],
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    [Defined if pthread_setaffinity_np exists.]) )
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AM_CONDITIONAL(HAVESETAFFINITY,
    [test "$ac_cv_func_pthread_setaffinity_np" = "yes"])
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have_numa="no"
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if test "$ac_cv_func_pthread_setaffinity_np" = "yes"; then
  # Check for libnuma.
  AC_CHECK_HEADER([numa.h])
  if test "$ac_cv_header_numa_h" = "yes"; then
    AC_CHECK_LIB([numa], [numa_available])
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    have_numa="yes"
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  fi
fi
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# Check for FFTW
have_fftw3="no"
AC_CHECK_HEADER([fftw3.h])
if test "$ac_cv_header_fftw3_h" = "yes"; then
   AC_CHECK_LIB([fftw3],[fftw_malloc], [AC_DEFINE([HAVE_FFTW],
   [1],[Defined if FFTW 3.x exists.])] )
   FFTW_LIBS="-lfftw3"
   have_fftw3="yes"
fi
AC_SUBST([FFTW_LIBS])

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# Check for Intel intrinsics header optionally used by vector.h.
AC_CHECK_HEADERS([immintrin.h])

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# Check for timing functions needed by cycle.h.
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AC_HEADER_TIME
AC_CHECK_HEADERS([sys/time.h c_asm.h intrinsics.h mach/mach_time.h])
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AC_CHECK_TYPE([hrtime_t],[AC_DEFINE(HAVE_HRTIME_T, 1, [Define to 1 if hrtime_t
is defined in <sys/time.h>])],,
[#if HAVE_SYS_TIME_H
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#include <sys/time.h>
#endif])
AC_CHECK_FUNCS([gethrtime read_real_time time_base_to_time clock_gettime mach_absolute_time])
AC_MSG_CHECKING([for _rtc intrinsic])
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AC_LINK_IFELSE([AC_LANG_PROGRAM(
[[#ifdef HAVE_INTRINSICS_H
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#include <intrinsics.h>
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#endif]],
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[[_rtc()]])],
[AC_DEFINE(HAVE__RTC,1,[Define if you have the UNICOS _rtc() intrinsic.])],[rtc_ok=no])
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AC_MSG_RESULT($rtc_ok)

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# Add warning flags by default, if these can be used. Option =error adds
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# -Werror to GCC, clang and Intel.  Note do this last as compiler tests may
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# become errors, if that's an issue don't use CFLAGS for these, use an AC_SUBST().
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AC_ARG_ENABLE([compiler-warnings],
   [AS_HELP_STRING([--enable-compiler-warnings],
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     [Enable compile time warning flags, if compiler is known @<:@error/no/yes)@:>@]
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   )],
   [enable_warn="$enableval"],
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   [enable_warn="error"]
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)
if test "$enable_warn" != "no"; then
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    # AX_CFLAGS_WARN_ALL does not give good warning flags for the Intel compiler
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    # We will do this by hand instead and only default to the macro for unknown compilers
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    case "$ax_cv_c_compiler_vendor" in
          gnu | clang)
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             CFLAGS="$CFLAGS -Wall -Wextra -Wno-unused-parameter"
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          ;;
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	  intel)
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             CFLAGS="$CFLAGS -w2 -Wunused-variable"
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          ;;
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	  *)
	     AX_CFLAGS_WARN_ALL
	  ;;
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    esac
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    # Add a "choke on warning" flag if it exists
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    if test "$enable_warn" = "error"; then
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       case "$ax_cv_c_compiler_vendor" in
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          intel | gnu | clang)
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             CFLAGS="$CFLAGS -Werror"
          ;;
       esac
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    fi
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fi

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# Various package configuration options.

# Hydro scheme.
AC_ARG_WITH([hydro],
   [AS_HELP_STRING([--with-hydro=<scheme>],
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      [Hydro dynamics to use @<:@gadget2, minimal, hopkins, default, gizmo default: gadget2@:>@]
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   )],
   [with_hydro="$withval"],
   [with_hydro="gadget2"]
)
case "$with_hydro" in
   gadget2)
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      AC_DEFINE([GADGET2_SPH], [1], [Gadget-2 SPH])
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   ;; 
   minimal)
      AC_DEFINE([MINIMAL_SPH], [1], [Minimal SPH])
   ;; 
   hopkins)
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      AC_DEFINE([HOPKINS_PE_SPH], [1], [Pressure-Entropy SPH])
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   ;; 
   default)
      AC_DEFINE([DEFAULT_SPH], [1], [Default SPH])
   ;; 
   gizmo)
      AC_DEFINE([GIZMO_SPH], [1], [GIZMO SPH])
   ;; 

   *)
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      AC_MSG_ERROR([Unknown hydrodynamics scheme: $with_hydro])
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   ;;
esac

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# SPH Kernel function
AC_ARG_WITH([kernel],
   [AS_HELP_STRING([--with-kernel=<kernel>],
      [Kernel function to use @<:@cubic-spline, quartic-spline, quintic-spline, wendland-C2, wendland-C4, wendland-C6 default: cubic-spline@:>@]
   )],
   [with_kernel="$withval"],
   [with_kernel="cubic-spline"]
)
case "$with_kernel" in
   cubic-spline)
      AC_DEFINE([CUBIC_SPLINE_KERNEL], [1], [Cubic spline kernel])
   ;;    
   quartic-spline)
      AC_DEFINE([QUARTIC_SPLINE_KERNEL], [1], [Quartic spline kernel])
   ;;    
   quintic-spline)
      AC_DEFINE([QUINTIC_SPLINE_KERNEL], [1], [Quintic spline kernel])
   ;;    
   wendland-C2)
      AC_DEFINE([WENDLAND_C2_KERNEL], [1], [Wendland-C2 kernel])
   ;;    
   wendland-C4)
      AC_DEFINE([WENDLAND_C4_KERNEL], [1], [Wendland-C4 kernel])
   ;;    
   wendland-C6)
      AC_DEFINE([WENDLAND_C6_KERNEL], [1], [Wendland-C6 kernel])
   ;;    
   *)
      AC_MSG_ERROR([Unknown kernel function: $with_kernel])
   ;;
esac

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#  Dimensionality of the hydro scheme.
AC_ARG_WITH([hydro-dimension],
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   [AS_HELP_STRING([--with-hydro-dimension=<dim>],
      [dimensionality of problem @<:@3/2/1 default: 3@:>@]
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   )],
   [with_dimension="$withval"],
   [with_dimension="3"]
)
case "$with_dimension" in
   1)
      AC_DEFINE([HYDRO_DIMENSION_1D], [1], [1D analysis])
   ;; 
   2)
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      AC_DEFINE([HYDRO_DIMENSION_2D], [2], [2D analysis])
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   ;; 
   3)
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      AC_DEFINE([HYDRO_DIMENSION_3D], [3], [3D analysis])
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   ;; 
   *)
      AC_MSG_ERROR([Dimensionality must be 1, 2 or 3])
   ;;
esac

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#  Equation of state
AC_ARG_WITH([equation-of-state],
   [AS_HELP_STRING([--with-equation-of-state=<EoS>],
      [equation of state @<:@ideal-gas, isothermal-gas default: ideal-gas@:>@]
   )],
   [with_eos="$withval"],
   [with_eos="ideal-gas"]
)
case "$with_eos" in
   ideal-gas)
      AC_DEFINE([EOS_IDEAL_GAS], [1], [Ideal gas equation of state])
   ;; 
   isothermal-gas)
      AC_DEFINE([EOS_ISOTHERMAL_GAS], [1], [Isothermal gas equation of state])
   ;; 
   *)
      AC_MSG_ERROR([Unknown equation of state: $with_eos])
   ;;
esac

#  Adiabatic index
AC_ARG_WITH([adiabatic-index],
   [AS_HELP_STRING([--with-adiabatic-index=<gamma>],
      [adiabatic index @<:@5/3, 7/5, 4/3, 2 default: 5/3@:>@]
   )],
   [with_gamma="$withval"],
   [with_gamma="5/3"]
)
case "$with_gamma" in
   5/3)
      AC_DEFINE([HYDRO_GAMMA_5_3], [5./3.], [Adiabatic index is 5/3])
   ;; 
   7/5)
      AC_DEFINE([HYDRO_GAMMA_7_5], [7./5.], [Adiabatic index is 7/5])
   ;; 
   4/3)
      AC_DEFINE([HYDRO_GAMMA_4_3], [4./3.], [Adiabatic index is 4/3])
   ;; 
   2)
      AC_DEFINE([HYDRO_GAMMA_2_1], [2.], [Adiabatic index is 2])
   ;; 
   *)
      AC_MSG_ERROR([Unknown adiabatic index: $with_gamma])
   ;;
esac

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#  Riemann solver
AC_ARG_WITH([riemann-solver],
   [AS_HELP_STRING([--with-riemann-solver=<solver>],
      [riemann solver (gizmo-sph only) @<:@none, exact, trrs, hllc, default: none@:>@]
   )],
   [with_riemann="$withval"],
   [with_riemann="none"]
)
case "$with_riemann" in
   none)
      AC_DEFINE([RIEMANN_SOLVER_NONE], [1], [No Riemann solver])
   ;; 
   exact)
      AC_DEFINE([RIEMANN_SOLVER_EXACT], [1], [Exact Riemann solver])
   ;; 
   trrs)
      AC_DEFINE([RIEMANN_SOLVER_TRRS], [1], [Two Rarefaction Riemann Solver])
   ;; 
   hllc)
      AC_DEFINE([RIEMANN_SOLVER_HLLC], [1], [Harten-Lax-van Leer-Contact Riemann solver])
   ;; 
   *)
      AC_MSG_ERROR([Unknown Riemann solver: $with_riemann])
   ;;
esac

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#  Cooling function
AC_ARG_WITH([cooling],
   [AS_HELP_STRING([--with-cooling=<function>],
      [cooling function @<:@none, const-du, const-lambda, grackle default: none@:>@]
   )],
   [with_cooling="$withval"],
   [with_cooling="none"]
)
case "$with_cooling" in
   none)
      AC_DEFINE([COOLING_NONE], [1], [No cooling function])
   ;; 
   const-du)
      AC_DEFINE([COOLING_CONST_DU], [1], [Const du/dt cooling function])
   ;; 
   const-lambda)
      AC_DEFINE([COOLING_CONST_LAMBDA], [1], [Const Lambda cooling function])
   ;; 
   grackle)
      AC_DEFINE([COOLING_GRACKLE], [1], [Cooling via the grackle library])
   ;; 
   *)
      AC_MSG_ERROR([Unknown cooling function: $with_cooling])
   ;;
esac

#  External potential
AC_ARG_WITH([ext-potential],
   [AS_HELP_STRING([--with-ext-potential=<pot>],
      [external potential @<:@none, point-mass, isothermal, softened-isothermal, disc-patch default: none@:>@]
   )],
   [with_potential="$withval"],
   [with_potential="none"]
)
case "$with_potential" in
   none)
      AC_DEFINE([EXTERNAL_POTENTIAL_NONE], [1], [No external potential])
   ;; 
   point-mass)
      AC_DEFINE([EXTERNAL_POTENTIAL_POINTMASS], [1], [Point-mass external potential])
   ;; 
   isothermal)
      AC_DEFINE([EXTERNAL_POTENTIAL_ISOTHERMAL], [1], [Isothermal external potential])
   ;; 
   softened-isothermal)
      AC_DEFINE([EXTERNAL_POTENTIAL_SOFTENED_ISOTHERMAL], [1], [Softened isothermal external potential])
   ;; 
   disc-patch)
      AC_DEFINE([EXTERNAL_POTENTIAL_DISC_PATCH], [1], [Disc-patch external potential])
   ;; 
   *)
      AC_MSG_ERROR([Unknown external potential: $with_potential])
   ;;
esac
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# Check for git, needed for revision stamps.
AC_PATH_PROG([GIT_CMD], [git])
AC_SUBST([GIT_CMD])
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# Make the documentation. Add conditional to handle disable option.
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DX_INIT_DOXYGEN(libswift,doc/Doxyfile,doc/)
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AM_CONDITIONAL([HAVE_DOXYGEN], [test "$ac_cv_path_ac_pt_DX_DOXYGEN" != ""])
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# Handle .in files.
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AC_CONFIG_FILES([Makefile src/Makefile examples/Makefile doc/Makefile doc/Doxyfile tests/Makefile])
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AC_CONFIG_FILES([tests/testReading.sh], [chmod +x tests/testReading.sh])
AC_CONFIG_FILES([tests/testPair.sh], [chmod +x tests/testPair.sh])
AC_CONFIG_FILES([tests/testPairPerturbed.sh], [chmod +x tests/testPairPerturbed.sh])
AC_CONFIG_FILES([tests/test27cells.sh], [chmod +x tests/test27cells.sh])
AC_CONFIG_FILES([tests/test27cellsPerturbed.sh], [chmod +x tests/test27cellsPerturbed.sh])
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AC_CONFIG_FILES([tests/test125cells.sh], [chmod +x tests/test125cells.sh])
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AC_CONFIG_FILES([tests/testParser.sh], [chmod +x tests/testParser.sh])
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# Save the compilation options
AC_DEFINE_UNQUOTED([SWIFT_CONFIG_FLAGS],["$swift_config_flags"],[Flags passed to configure])

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# Report general configuration.
AC_MSG_RESULT([
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   Compiler        : $CC
    - vendor       : $ax_cv_c_compiler_vendor
    - version      : $ax_cv_c_compiler_version
    - flags        : $CFLAGS
   MPI enabled     : $enable_mpi
   HDF5 enabled    : $with_hdf5
    - parallel     : $have_parallel_hdf5
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   Metis enabled   : $have_metis
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   FFTW3 enabled   : $have_fftw3
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   libNUMA enabled : $have_numa
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   Using tcmalloc  : $have_tcmalloc
   CPU profiler    : $have_profiler
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   Hydro scheme       : $with_hydro
   Dimensionality     : $with_dimension
   Kernel function    : $with_kernel
   Equation of state  : $with_eos
   Adiabatic index    : $with_gamma
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   Riemann solver     : $with_riemann
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   Cooling function   : $with_cooling
   External potential : $with_potential
   Task debugging     : $enable_task_debugging
   Debugging checks   : $enable_debugging_checks
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])

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# Generate output.
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AC_OUTPUT