diff --git a/Makefile.in b/Makefile.in
deleted file mode 100644
index cbb02be17a372a5aacb2bcd984c028863d35497e..0000000000000000000000000000000000000000
--- a/Makefile.in
+++ /dev/null
@@ -1,782 +0,0 @@
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-# Sources for test_bh
-#test_bh_SOURCES = test_bh.c
-#test_bh_CFLAGS = $(AM_CFLAGS)
-#test_bh_LDADD =  ../src/.libs/libquicksched.a
-
-#if HAVE_CUDA
-#test_cuda_SOURCES = test_gpu_simple.cu
-#test_cuda_CFLAGS = -DWITH_CUDA $(AM_CFLAGS) $(CUDA_CFLAGS) $(CUDA_MYFLAGS)
-#test_cuda_LINK = $(NVCC)
-#test_cuda_LDADD = ../src/.libs/libquicksched_cuda.a $(CUDA_LIBS)
-#endif
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
diff --git a/examples/test_bh.cu b/examples/test_bh.cu
index 6c8f7bfc6df1d7c4dc5621cc12350da446b5734c..a514ab0ab2ef84ac68f4cb0dfe17b1590d36bbc4 100644
--- a/examples/test_bh.cu
+++ b/examples/test_bh.cu
@@ -17,7 +17,7 @@
  * along with this program.  If not, see <http://www.gnu.org/licenses/>.
  *
 * *****************************************************************************/
-//#define EXACT
+#define NO_EXACT
 //#define ID
 #define NO_QUADRUPOLES
 
@@ -234,7 +234,7 @@ __device__ __forceinline__ void make_interact_pc(struct cell *leaf, struct cell
     
         ir = rsqrtf(r2);
         w = com_mass[cell_j] * const_G * ir * ir * ir;
-        printf("Doing make_interact_pc\n");
+//        printf("Doing make_interact_pc\n");
 /*        if(threadIdx.x == 0)
             printf("part.a = %e w*dx = %e \n", parts_cuda[i].a[0], w*dx[0]);*/
         atomicAdd(&parts_cuda[i].a[0], w*dx[0]);
@@ -1466,7 +1466,7 @@ float *comm_temp;
     #endif        
 
 
-       int pcs;
+/*       int pcs;
     if( cudaMemcpyFromSymbol( &pcs, pc_calcs, sizeof(int), 0, cudaMemcpyDeviceToHost) != cudaSuccess)
         error("Failed");
     printf("pc calcs = %i\n", pcs);
@@ -1476,10 +1476,12 @@ struct task* tasks =  qsched_get_timers( &s , s.count );
       printf("%i %lli %lli %i\n", tasks[i].type, tasks[i].tic, tasks[i].toc , tasks[i].blockID);
        // printf("\n");
     
-  }
+  }*/
 
 }   
+    
  #ifdef EXACT
+printf("Starting exact computation\n");
     struct part *parts2;
         parts2 = (struct part*) malloc(sizeof(struct part) * N );
         for(k = 0; k < N; k++)
@@ -1555,7 +1557,7 @@ ticks tic, toc_run ;
 
 
 int main(int argc, char *argv[]) {
-    int c, nr_threads;
+    int c, nr_threads= 1;
     int N = 1000, runs = 1;
     char fileName[100];
     fileName[0] = 0;
diff --git a/examples/test_qr.cu b/examples/test_qr.cu
index c37277ab7f51b7efd9f1ac4bb26bfb6261cd4a23..a9266ae30879057511c793fae69788156cdfbe77 100644
--- a/examples/test_qr.cu
+++ b/examples/test_qr.cu
@@ -7,6 +7,7 @@
 #include <string.h>
 #include <unistd.h>
 #include <math.h>
+#define WITH_CBLAS
 //#include <gperftools/profiler.h>
 
 
@@ -766,7 +767,8 @@ void test_qr(int m , int n , int K , int nr_threads , int runs)
     
         /* Add kth corner task. */
         data[0] = k; data[1] = k; data[2] = k;
-        tid_new = qsched_addtask( &s , task_SGEQRF , task_flag_none , data , sizeof(int)*3 , 2 );
+//        tid_new = qsched_addtask( &s , task_SGEQRF , task_flag_none , data , sizeof(int)*3 , 2 );
+        tid_new = qsched_addtask( &s , task_SGEQRF , task_flag_none , data , sizeof(int)*3 , m-k );
         qsched_addlock(&s, tid_new, rid[k * m + k]);
         if (tid[k * m + k] != -1) qsched_addunlock(&s, tid[k * m + k], tid_new);
         tid[k * m + k] = tid_new;
@@ -775,7 +777,8 @@ void test_qr(int m , int n , int K , int nr_threads , int runs)
         /* Add column tasks on kth row. */
         for ( j = k+1 ; j < n ; j++ ) {
             data[0] = k; data[1] = j; data[2] = k;
-            tid_new = qsched_addtask( &s , task_SLARFT , task_flag_none , data , sizeof(int)*3 , 3 );
+//            tid_new = qsched_addtask( &s , task_SLARFT , task_flag_none , data , sizeof(int)*3 , 3 );
+            tid_new = qsched_addtask( &s , task_SLARFT , task_flag_none , data , sizeof(int)*3 , m-k );
             qsched_addlock(&s, tid_new, rid[j * m + k]);
             qsched_adduse(&s, tid_new, rid[k * m + k]);
             qsched_addunlock(&s, tid[k * m + k], tid_new);
@@ -788,7 +791,8 @@ void test_qr(int m , int n , int K , int nr_threads , int runs)
         
             /* Add the row tasks for the kth column. */
             data[0] = i; data[1] = k; data[2] = k;
-            tid_new = qsched_addtask( &s , task_STSQRF , task_flag_none , data , sizeof(int)*3 , 3 );
+  //          tid_new = qsched_addtask( &s , task_STSQRF , task_flag_none , data , sizeof(int)*3 , 3 );
+            tid_new = qsched_addtask( &s , task_STSQRF , task_flag_none , data , sizeof(int)*3 , m-k );
             qsched_addlock(&s, tid_new, rid[k * m + i]);
            qsched_addlock(&s, tid_new, rid[k * m + k]);
             qsched_addunlock(&s, tid[k * m + (i - 1)], tid_new);
@@ -798,7 +802,8 @@ void test_qr(int m , int n , int K , int nr_threads , int runs)
             /* Add the inner tasks. */
             for ( j = k+1 ; j < n ; j++ ) {
                 data[0] = i; data[1] = j; data[2] = k;
-                tid_new = qsched_addtask( &s , task_SSSRFT , task_flag_none , data , sizeof(int)*3 , 5 );
+//                tid_new = qsched_addtask( &s , task_SSSRFT , task_flag_none , data , sizeof(int)*3 , 5 );
+                tid_new = qsched_addtask( &s , task_SSSRFT , task_flag_none , data , sizeof(int)*3 , m-k );
                 qsched_addlock(&s, tid_new, rid[j * m + i]);
                 qsched_adduse(&s, tid_new, rid[k * m + i]);
                 qsched_addlock(&s, tid_new, rid[j * m + k]);
@@ -837,7 +842,7 @@ void test_qr(int m , int n , int K , int nr_threads , int runs)
 
 
     
-   /*float *tempMatrix = tileToColumn(A, m*n*K*K, m, n, K);
+   float *tempMatrix = tileToColumn(A, m*n*K*K, m, n, K);
    float *Q = computeQ(tempMatrix, m*K, K, tau, m);
    float *R = getR(tempMatrix, m*K);
    cblas_sgemm(CblasColMajor, CblasNoTrans, CblasNoTrans, m*K, m*K, m*K, 1.0, Q,
@@ -854,13 +859,13 @@ void test_qr(int m , int n , int K , int nr_threads , int runs)
    printf("Checked for correctness\n");
    free(tempMatrix);
    free(Q);
-   free(R);*/
+   free(R);
 
 //    cudaMemcpy( A , device_array , sizeof(float) * m * n * K * K, cudaMemcpyHostToDevice);
  //   A = tileToColumn(A,m * n * K * K, m, n, K);
    // printMatrix(A, m, n);
 //    printTileMatrix(A, m , n);
-    struct task* tasks =  qsched_get_timers( &s , s.count );
+/*    struct task* tasks =  qsched_get_timers( &s , s.count );
     for(i = 0; i < s.count; i++)
     {
       printf("%i %lli %lli %i ", tasks[i].type, tasks[i].tic, tasks[i].toc , tasks[i].blockID);
@@ -877,7 +882,7 @@ void test_qr(int m , int n , int K , int nr_threads , int runs)
             printf("0 0");
         printf("\n");
     }
-    free(tasks);
+    free(tasks);*/
     cudaFree(A_orig);
     cudaFree(tau);
 cudaDeviceReset();
diff --git a/src/CUDACompile.sh b/src/CUDACompile.sh
index b454302c727aa424aff64e9f18fbeedbf86951c4..ae3ee14527e39f55c083c366b77f69358e66b69f 100755
--- a/src/CUDACompile.sh
+++ b/src/CUDACompile.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 FLAGS2="-Xcompiler=-fsanitize=address -Xcompiler=-fno-omit-frame-pointer"
 DEBUG_FLAGS="-G -DDEBUG_GPU"
-FLAGS="-O3 -g -DCPU_TPS=3.1e9 -lineinfo -src-in-ptx -Xptxas -dlcm=cg --maxrregcount=32 -gencode arch=compute_30,code=sm_30 -ftz=true -fmad=true -DFPTYPE_SINGLE -lgomp -DWITH_CUDA -DTIMERS -ccbin=gcc"
+FLAGS="-O3 -g -DCPU_TPS=3.1e9 -lineinfo -src-in-ptx -Xptxas -dlcm=cg --maxrregcount=32 -gencode arch=compute_30,code=sm_30 -ftz=true -fmad=true -DFPTYPE_SINGLE -lgomp -DWITH_CUDA -DTIMERS -ccbin=/usr/bin/gcc-4.8"
 # -DGPU_locks -Xptxas -dlcm=cg  -Xptxas="-v"" 
 # -DNO_LOADS
 #-DSIM
@@ -9,33 +9,33 @@ FLAGS="-O3 -g -DCPU_TPS=3.1e9 -lineinfo -src-in-ptx -Xptxas -dlcm=cg --maxrregco
 
 CFLAGS="-fsanitize=address -fno-omit-frame-pointer"
 
-gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -g -O3 -Wall -Werror -ffast-math -fstrict-aliasing -ftree-vectorize -funroll-loops -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -fopenmp -DTIMERS -DWITH_CUDA -g -O2 -march=native -pthread -MT qsched.lo -MD -MP -MF .deps/qsched.Tpo -c qsched.c -o qsched.o  #-fsanitize=address -fno-omit-frame-pointer
-gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -g -O3 -Wall -Werror -ffast-math -fstrict-aliasing -ftree-vectorize -funroll-loops -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -fopenmp -DTIMERS -DWITH_CUDA -g -O2 -march=native -pthread -MT qsched.lo -MD -MP -MF .deps/qsched.Tpo -c queue.c -o queue.o  #-fsanitize=address -fno-omit-frame-pointer
+gcc-4.8 -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -g -O3 -Wall -Werror -ffast-math -fstrict-aliasing -ftree-vectorize -funroll-loops -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -fopenmp -DTIMERS -DWITH_CUDA -g -O2 -march=native -pthread -MT qsched.lo -MD -MP -MF .deps/qsched.Tpo -c qsched.c -o qsched.o  #-fsanitize=address -fno-omit-frame-pointer
+gcc-4.8 -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -g -O3 -Wall -Werror -ffast-math -fstrict-aliasing -ftree-vectorize -funroll-loops -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -fopenmp -DTIMERS -DWITH_CUDA -g -O2 -march=native -pthread -MT qsched.lo -MD -MP -MF .deps/qsched.Tpo -c queue.c -o queue.o  #-fsanitize=address -fno-omit-frame-pointer
 
 
-nvcc $FLAGS -dc cuda_queue.cu qsched.o queue.o -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS -dc cuda_queue.cu qsched.o queue.o -lm
 
-nvcc $FLAGS  -lib cuda_queue.o qsched.o queue.o -o .libs/libquicksched_cuda.a -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -lib cuda_queue.o qsched.o queue.o -o .libs/libquicksched_cuda.a -lm
 
-nvcc $FLAGS  -DGPU_locks -dc cuda_queue.cu qsched.o queue.o -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -DGPU_locks -dc cuda_queue.cu qsched.o queue.o -lm
 
-nvcc $FLAGS  -lib cuda_queue.o qsched.o queue.o -o .libs/libquicksched_cuda_locks.a -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -lib cuda_queue.o qsched.o queue.o -o .libs/libquicksched_cuda_locks.a -lm
 
 cd ../examples
 
-nvcc $FLAGS  -dc -m64 -I../src -dc -lcudart -lcuda  test_gpu_simple.cu -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -dc -m64 -I../src -dc -L/home/aidan/cuda_7.0/lib -L/home/aidan/cuda_7.0/lib64 -lcudart -lcuda  test_gpu_simple.cu -lm
 
-nvcc $FLAGS  -m64 -I../src -Xnvlink -v test_gpu_simple.o ../src/.libs/libquicksched_cuda.a -o simple_cuda_test -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -m64 -I../src -L/home/aidan/cuda_7.0/lib -L/home/aidan/cuda_7.0/lib64 -Xnvlink -v test_gpu_simple.o ../src/.libs/libquicksched_cuda.a -o simple_cuda_test -lm
 
 
-nvcc $FLAGS  -dc -m64 -I../src -dc -lcudart -lcuda -lm test_qr.cu
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -dc -m64 -I../src -dc -lf77blas -lcblas -latlas -lm -I$CULA_INC_PATH -L$CULA_LIB_PATH_64 -L/home/aidan/ATLAS/ATLAS_linux/lib/ -L/home/aidan/cuda_7.0/lib -L/home/aidan/cuda_7.0/lib64 -lcudart -lcula_lapack -lcuda /usr/lib64/atlas/libcblas.a /usr/lib64/atlas/libptcblas.a test_qr.cu -lm
 
-nvcc $FLAGS  -m64 -I../src -lm -Xnvlink -v test_qr.o ../src/.libs/libquicksched_cuda.a -o test_qr_gpu 
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -m64 -I../src -lf77blas -lcblas -latlas -lm -I$CULA_INC_PATH -L$CULA_LIB_PATH_64 -L/home/aidan/ATLAS/ATLAS_linux/lib/ -L/home/aidan/cuda_7.0/lib -L/home/aidan/cuda_7.0/lib64 -lcula_lapack -Xnvlink -v test_qr.o ../src/.libs/libquicksched_cuda.a /usr/lib64/atlas/libcblas.a /usr/lib64/atlas/libptcblas.a -o test_qr_gpu -lm
 
-nvcc $FLAGS  -dc -m64 -I../src -dc -lcudart -lcuda  test_hierarchy.cu -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -dc -m64 -I../src -dc -L/home/aidan/cuda_7.0/lib -L/home/aidan/cuda_7.0/lib64 -lcudart -lcuda  test_hierarchy.cu -lm
 
-nvcc $FLAGS  -m64 -I../src -Xnvlink -v test_hierarchy.o ../src/.libs/libquicksched_cuda.a -o test_heirarchy -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -m64 -I../src -L/home/aidan/cuda_7.0/lib -L/home/aidan/cuda_7.0/lib64 -Xnvlink -v test_hierarchy.o ../src/.libs/libquicksched_cuda.a -o test_heirarchy -lm
 
-nvcc $FLAGS  -dc -m64 -I../src -dc -lcudart -lcuda  test_bh.cu -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -dc -m64 -I../src -dc -L/home/aidan/cuda_7.0/lib -L/home/aidan/cuda_7.0/lib64 -lcudart -lcuda  test_bh.cu -lm
 
-nvcc $FLAGS  -m64 -I../src -Xnvlink -v test_bh.o ../src/.libs/libquicksched_cuda.a -o test_bh -lm
+/home/aidan/cuda_7.0/bin/nvcc $FLAGS  -m64 -I../src -L/home/aidan/cuda_7.0/lib -L/home/aidan/cuda_7.0/lib64 -Xnvlink -v test_bh.o ../src/.libs/libquicksched_cuda.a -o test_bh -lm
diff --git a/src/cuda_queue.cu b/src/cuda_queue.cu
index 3d4e5f3bd10d50f10df3ff9cecee6c2055525e58..e79145e9fd86e4bcaebeeee671724ebe30425a4c 100644
--- a/src/cuda_queue.cu
+++ b/src/cuda_queue.cu
@@ -181,7 +181,8 @@ __device__ int cuda_queue_gettask ( struct queue_cuda *q ) {
     ind %= cuda_queue_size; 
     /* Loop until there is a valid task at that index. */
     while ( q->rec_count < q->count && ( tid = q->data[ind] ) < 0);
-    
+   // while (q->rec_count < q->count);
+//    tid = q->data[ind];
     /* Scratch the task from the queue */
     if ( tid >= 0 )
     {
@@ -1754,7 +1755,6 @@ printf("Median = %i\n", median);
         error("Failed to copy queue data pointer to the device");
 #endif
 
-
        /* Copy the queue structures to the device. */
         if ( cudaMemcpyToSymbol( cuda_queues , &queues , sizeof(struct queue_cuda) * nr_queues , 0 , cudaMemcpyHostToDevice ) != cudaSuccess )
             error("Failed to copy the queues to the device");
@@ -1848,6 +1848,7 @@ void qsched_run_CUDA ( struct qsched *s, qsched_funtype func) {
     tic = getticks();
   //  ProfilerStop();
     cudaMemcpyToSymbol( tot_num_tasks, &s->count, sizeof(int) );
+    printf("Running CUDA kernel now!\n");
     cudaEventRecord(startEvent,0);
     qsched_device_kernel<<<128, 128 >>> (  );
     cudaEventRecord(stopEvent,0);
@@ -1861,6 +1862,7 @@ void qsched_run_CUDA ( struct qsched *s, qsched_funtype func) {
         printf("%.3f\n", time );
     #endif
    // message( "run_CUDA took %.3f ms" , ((double)(toc_run - tic)) * itpms );
+    printf("Finished running CUDA\n");
 
 #else
         error("QuickSched was not compiled with CUDA support.");