###############################################################################
# This file is part of SWIFT.
# Copyright (c) 2015 Bert Vandenbroucke (bert.vandenbroucke@ugent.be)
#                    Matthieu Schaller (schaller@strw.leidenuniv.nl)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
#
##############################################################################

# Assuming output snapshots contain evolution of box of gas with star at its
# centre, this script will plot the evolution of the radial velocities, internal
# energies, mass and metallicities of the nearest n particles to the star over
# the duration of the simulation.

import matplotlib

matplotlib.use("Agg")
from pylab import *
from scipy import stats
import h5py
import numpy as np
import glob
import os.path

# Function to find index in array a for each element in array b
def find_indices(a, b):
    result = np.zeros(len(b))
    for i in range(len(b)):
        result[i] = ((np.where(a == b[i]))[0])[0]
    return result


# Plot parameters
params = {
    "axes.labelsize": 10,
    "axes.titlesize": 10,
    "font.size": 12,
    "legend.fontsize": 12,
    "xtick.labelsize": 10,
    "ytick.labelsize": 10,
    "text.usetex": True,
    "figure.figsize": (9.90, 6.45),
    "figure.subplot.left": 0.1,
    "figure.subplot.right": 0.99,
    "figure.subplot.bottom": 0.1,
    "figure.subplot.top": 0.95,
    "figure.subplot.wspace": 0.2,
    "figure.subplot.hspace": 0.2,
    "lines.markersize": 6,
    "lines.linewidth": 3.0,
}
rcParams.update(params)


# Number of snapshots and elements
newest_snap_name = max(glob.glob("stellar_evolution_*.hdf5"), key=os.path.getctime)
n_snapshots = (
    int(newest_snap_name.replace("stellar_evolution_", "").replace(".hdf5", "")) + 1
)
n_particles_to_plot = 500

# Read the simulation data
sim = h5py.File("stellar_evolution_0000.hdf5", "r")
boxSize = sim["/Header"].attrs["BoxSize"][0]
time = sim["/Header"].attrs["Time"][0]
scheme = sim["/HydroScheme"].attrs["Scheme"]
kernel = sim["/HydroScheme"].attrs["Kernel function"]
neighbours = sim["/HydroScheme"].attrs["Kernel target N_ngb"]
eta = sim["/HydroScheme"].attrs["Kernel eta"]
git = sim["Code"].attrs["Git Revision"]

# Units
unit_length_in_cgs = sim["/Units"].attrs["Unit length in cgs (U_L)"]
unit_mass_in_cgs = sim["/Units"].attrs["Unit mass in cgs (U_M)"]
unit_time_in_cgs = sim["/Units"].attrs["Unit time in cgs (U_t)"]
unit_temp_in_cgs = sim["/Units"].attrs["Unit temperature in cgs (U_T)"]
unit_vel_in_cgs = unit_length_in_cgs / unit_time_in_cgs
unit_energy_in_cgs = unit_mass_in_cgs * unit_vel_in_cgs * unit_vel_in_cgs
unit_length_in_si = 0.01 * unit_length_in_cgs
unit_mass_in_si = 0.001 * unit_mass_in_cgs
unit_time_in_si = unit_time_in_cgs
unit_density_in_cgs = unit_mass_in_cgs * unit_length_in_cgs ** -3
unit_pressure_in_cgs = unit_mass_in_cgs / unit_length_in_cgs * unit_time_in_cgs ** -2
unit_int_energy_in_cgs = unit_energy_in_cgs / unit_mass_in_cgs
unit_entropy_in_cgs = unit_energy_in_cgs / unit_temp_in_cgs
Myr_in_cgs = 3.154e13
Msun_in_cgs = 1.989e33

# Read data of zeroth snapshot
pos = sim["/PartType0/Coordinates"][:, :]
x = pos[:, 0] - boxSize / 2
y = pos[:, 1] - boxSize / 2
z = pos[:, 2] - boxSize / 2
vel = sim["/PartType0/Velocities"][:, :]
r = sqrt(x ** 2 + y ** 2 + z ** 2)
v_r = (x * vel[:, 0] + y * vel[:, 1] + z * vel[:, 2]) / r
u = sim["/PartType0/InternalEnergies"][:]
S = sim["/PartType0/Entropies"][:]
P = sim["/PartType0/Pressures"][:]
rho = sim["/PartType0/Densities"][:]
mass = sim["/PartType0/Masses"][:]
IDs = sim["/PartType0/ParticleIDs"][:]

# Find which particles are closest to centre of box
index = argsort(r)
part_IDs_to_plot = zeros(n_particles_to_plot)
part_IDs_to_plot = np.sort(IDs[index[0:n_particles_to_plot]])

# Declare arrrays to plot
masses_to_plot = zeros((n_particles_to_plot, n_snapshots))
v_r_to_plot = zeros((n_particles_to_plot, n_snapshots))
metallicities_to_plot = zeros((n_particles_to_plot, n_snapshots))
internal_energies_to_plot = zeros((n_particles_to_plot, n_snapshots))
t = zeros(n_snapshots)

# Read data from rest of snapshots
for i in range(n_snapshots):
    print("reading snapshot " + str(i))
    # Read the simulation data
    sim = h5py.File("stellar_evolution_%04d.hdf5" % i, "r")
    t[i] = sim["/Header"].attrs["Time"][0]

    pos = sim["/PartType0/Coordinates"][:, :]
    x = pos[:, 0] - boxSize / 2
    y = pos[:, 1] - boxSize / 2
    z = pos[:, 2] - boxSize / 2
    vel = sim["/PartType0/Velocities"][:, :]
    r = sqrt(x ** 2 + y ** 2 + z ** 2)
    v_r = (x * vel[:, 0] + y * vel[:, 1] + z * vel[:, 2]) / r
    u = sim["/PartType0/InternalEnergies"][:]
    S = sim["/PartType0/Entropies"][:]
    P = sim["/PartType0/Pressures"][:]
    rho = sim["/PartType0/Densities"][:]
    mass = sim["/PartType0/Masses"][:]
    metallicity = sim["/PartType0/Metallicities"][:]
    internal_energy = sim["/PartType0/InternalEnergies"][:]
    IDs = sim["/PartType0/ParticleIDs"][:]

    # Find which particles we want to plot and store their data
    indices = (find_indices(IDs, part_IDs_to_plot)).astype(int)
    masses_to_plot[:, i] = mass[indices[:]]
    v_r_to_plot[:, i] = v_r[indices[:]]
    metallicities_to_plot[:, i] = metallicity[indices[:]]
    internal_energies_to_plot[:, i] = internal_energy[indices[:]]


# Plot the interesting quantities
figure()

# Radial velocity --------------------------------
subplot(221)
for j in range(n_particles_to_plot):
    plot(
        t * unit_time_in_cgs / Myr_in_cgs,
        v_r_to_plot[j, :] * unit_vel_in_cgs,
        linewidth=0.5,
        color="k",
        ms=0.5,
        alpha=0.1,
    )
xlabel("Time (Myr)", labelpad=0)
ylabel("Radial velocity $(\\rm{cm} \cdot \\rm{s}^{-1})$", labelpad=0)
ticklabel_format(style="sci", axis="y", scilimits=(0, 0))

# Internal energy --------------------------------
subplot(222)
for j in range(n_particles_to_plot):
    plot(
        t * unit_time_in_cgs / Myr_in_cgs,
        internal_energies_to_plot[j, :] * unit_energy_in_cgs / unit_mass_in_cgs,
        linewidth=0.5,
        color="k",
        ms=0.5,
        alpha=0.1,
    )
xlabel("Time (Myr)", labelpad=0)
ylabel("Internal energy $(\\rm{erg} \cdot \\rm{g}^{-1})$", labelpad=2)
ticklabel_format(style="sci", axis="y", scilimits=(0, 0))

# Masses --------------------------------
subplot(223)
for j in range(n_particles_to_plot):
    plot(
        t * unit_time_in_cgs / Myr_in_cgs,
        masses_to_plot[j, :] * unit_mass_in_cgs / Msun_in_cgs,
        linewidth=0.5,
        color="k",
        ms=0.5,
        alpha=0.1,
    )
xlabel("Time (Myr)", labelpad=0)
ylabel("Mass (Msun)", labelpad=2)
ticklabel_format(style="sci", axis="y", scilimits=(0, 0))

# Metallicities --------------------------------
subplot(224)
for j in range(n_particles_to_plot):
    plot(
        t * unit_time_in_cgs / Myr_in_cgs,
        metallicities_to_plot[j, :],
        linewidth=0.5,
        color="k",
        ms=0.5,
        alpha=0.1,
    )
xlabel("Time (Myr)", labelpad=0)
ylabel("Metallicity", labelpad=2)
ticklabel_format(style="sci", axis="y", scilimits=(0, 0))

savefig("particle_evolution.png", dpi=200)
