Started by GitLab push by Loic Hausammann Lightweight checkout support not available, falling back to full checkout. Checking out git https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git into /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script to read Jenkinsfile Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@script/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10 Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' Setting http proxy: 172.17.170.12:8888 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10 skipping resolution of commit remotes/origin/intel, since it originates from another repository > git rev-parse refs/remotes/origin/intel^{commit} # timeout=10 Checking out Revision a45aa1bac1bec1f2e7cc7e451d6fff6f79018886 (refs/remotes/origin/intel) > git config core.sparsecheckout # timeout=10 > git checkout -f a45aa1bac1bec1f2e7cc7e451d6fff6f79018886 # timeout=10 Commit message: "test" > git rev-list --no-walk 95e73c527f1f6c9c4db2165332696904d0a7d23b # timeout=10 Running in Durability level: MAX_SURVIVABILITY [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@2 [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git init /cosma/home/jenkins/.jenkins/jobs/CSDS-Pipeline/workspace@2 # timeout=10 Fetching upstream changes from https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git > git --version # timeout=10 > git --version # 'git version 1.8.3.1' Setting http proxy: 172.17.170.12:8888 > git fetch --tags --progress https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://gitlab.cosma.dur.ac.uk/lhausammann/csds-reader.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch skipping resolution of commit remotes/origin/intel, since it originates from another repository > git rev-parse refs/remotes/origin/intel^{commit} # timeout=10 Checking out Revision a45aa1bac1bec1f2e7cc7e451d6fff6f79018886 (refs/remotes/origin/intel) > git config core.sparsecheckout # timeout=10 > git checkout -f a45aa1bac1bec1f2e7cc7e451d6fff6f79018886 # timeout=10 Commit message: "test" [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Standard) [Pipeline] updateGitlabCommitStatus [Pipeline] sh libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:64: installing './compile' configure.ac:85: installing './config.guess' configure.ac:85: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable debugging... no checking for gcc... /cosma/local/gcc/7.3.0/bin/gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /cosma/local/gcc/7.3.0/bin/gcc accepts -g... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of /cosma/local/gcc/7.3.0/bin/gcc... gcc3 checking whether /cosma/local/gcc/7.3.0/bin/gcc and cc understand -c and -o together... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to support OpenMP... -fopenmp checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 7.3.0 checking for C/C++ restrict keyword... __restrict checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /cosma/local/gcc/7.3.0/bin/gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /cosma/local/gcc/7.3.0/bin/gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... /cosma/local/gcc/7.3.0/bin/gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /cosma/local/gcc/7.3.0/bin/gcc supports -fno-rtti -fno-exceptions... no checking for /cosma/local/gcc/7.3.0/bin/gcc option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/7.3.0/bin/gcc PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/7.3.0/bin/gcc static flag -static works... no checking if /cosma/local/gcc/7.3.0/bin/gcc supports -c -o file.o... yes checking if /cosma/local/gcc/7.3.0/bin/gcc supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/7.3.0/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to accept ISO C99... none needed checking for inline... inline checking whether make sets $(MAKE)... (cached) yes checking for ANSI C header files... (cached) yes checking for sqrt in -lm... yes checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking c_asm.h usability... no checking c_asm.h presence... no checking for c_asm.h... no checking intrinsics.h usability... no checking intrinsics.h presence... no checking for intrinsics.h... no checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking whether C compiler accepts -Wstrict-prototypes... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ------- Summary -------- CSDS v.1.5 Compiler : /cosma/local/gcc/7.3.0/bin/gcc - vendor : gnu - version : 7.3.0 - flags : -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -fopenmp OpenMP enabled : yes Debugging checks : no Python enabled : no ------------------------ make all-recursive make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making all in src make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. sed -e "s,@major_version\@,1," \ -e "s,@minor_version\@,5," csds_version.h.in > csds_version.h make all-am make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c -o libcsds_la-csds_header.lo `test -f 'csds_header.c' || echo './'`csds_header.c /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c -o libcsds_la-csds_loader_io.lo `test -f 'csds_loader_io.c' || echo './'`csds_loader_io.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.c -fPIC -DPIC -o .libs/libcsds_la-csds_header.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c csds_loader_io.c -fPIC -DPIC -o .libs/libcsds_la-csds_loader_io.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c csds_loader_io.c -o libcsds_la-csds_loader_io.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_loader_io.Tpo .deps/libcsds_la-csds_loader_io.Plo libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.c -o libcsds_la-csds_header.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c -o libcsds_la-csds_time.lo `test -f 'csds_time.c' || echo './'`csds_time.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c csds_time.c -fPIC -DPIC -o .libs/libcsds_la-csds_time.o mv -f .deps/libcsds_la-csds_header.Tpo .deps/libcsds_la-csds_header.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c -o libcsds_la-csds_tools.lo `test -f 'csds_tools.c' || echo './'`csds_tools.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c csds_time.c -o libcsds_la-csds_time.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c csds_tools.c -fPIC -DPIC -o .libs/libcsds_la-csds_tools.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c csds_tools.c -o libcsds_la-csds_tools.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_time.Tpo .deps/libcsds_la-csds_time.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_reader.lo -MD -MP -MF .deps/libcsds_la-csds_reader.Tpo -c -o libcsds_la-csds_reader.lo `test -f 'csds_reader.c' || echo './'`csds_reader.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_reader.lo -MD -MP -MF .deps/libcsds_la-csds_reader.Tpo -c csds_reader.c -fPIC -DPIC -o .libs/libcsds_la-csds_reader.o mv -f .deps/libcsds_la-csds_tools.Tpo .deps/libcsds_la-csds_tools.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_logfile.lo -MD -MP -MF .deps/libcsds_la-csds_logfile.Tpo -c -o libcsds_la-csds_logfile.lo `test -f 'csds_logfile.c' || echo './'`csds_logfile.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_logfile.lo -MD -MP -MF .deps/libcsds_la-csds_logfile.Tpo -c csds_logfile.c -fPIC -DPIC -o .libs/libcsds_la-csds_logfile.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_logfile.lo -MD -MP -MF .deps/libcsds_la-csds_logfile.Tpo -c csds_logfile.c -o libcsds_la-csds_logfile.o >/dev/null 2>&1 libtool: 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-I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c -o libcsds_writer_la-csds_logfile_writer.lo `test -f 'csds_logfile_writer.c' || echo './'`csds_logfile_writer.c make[3]: Circular csds_version.h <- csds_version.h dependency dropped. libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.c -fPIC -DPIC -o .libs/libcsds_writer_la-csds_logfile_writer.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c csds_parser.c -o libcsds_la-csds_parser.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.c -o libcsds_writer_la-csds_logfile_writer.o >/dev/null 2>&1 mv -f .deps/libcsds_writer_la-csds_logfile_writer.Tpo .deps/libcsds_writer_la-csds_logfile_writer.Plo /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o libcsds_writer.la -rpath /usr/local/lib libcsds_writer_la-csds_logfile_writer.lo -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -shared -fPIC -DPIC .libs/libcsds_writer_la-csds_logfile_writer.o -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -fopenmp -Wl,-soname -Wl,libcsds_writer.so.0 -o .libs/libcsds_writer.so.0.0.0 mv -f .deps/libcsds_la-csds_parser.Tpo .deps/libcsds_la-csds_parser.Plo /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o libcsds.la -rpath /usr/local/lib libcsds_la-csds_header.lo libcsds_la-csds_loader_io.lo libcsds_la-csds_time.lo libcsds_la-csds_tools.lo libcsds_la-csds_reader.lo libcsds_la-csds_logfile.lo libcsds_la-csds_index.lo libcsds_la-quick_sort.lo libcsds_la-csds_parameters.lo libcsds_la-csds_reader_generate_index.lo libcsds_la-csds_cosmology.lo libcsds_la-csds_fields.lo libcsds_la-csds_hashmap.lo libcsds_la-csds_clocks.lo libcsds_la-csds_parser.lo libcsds_la-csds_part_type.lo -lm libtool: link: (cd ".libs" && rm -f "libcsds_writer.so.0" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so.0") libtool: link: (cd ".libs" && rm -f "libcsds_writer.so" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so") libtool: link: ar cru .libs/libcsds_writer.a libcsds_writer_la-csds_logfile_writer.o libtool: link: ranlib .libs/libcsds_writer.a libtool: link: ( cd ".libs" && rm -f "libcsds_writer.la" && ln -s "../libcsds_writer.la" "libcsds_writer.la" ) libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -shared -fPIC -DPIC .libs/libcsds_la-csds_header.o .libs/libcsds_la-csds_loader_io.o .libs/libcsds_la-csds_time.o .libs/libcsds_la-csds_tools.o .libs/libcsds_la-csds_reader.o .libs/libcsds_la-csds_logfile.o .libs/libcsds_la-csds_index.o .libs/libcsds_la-quick_sort.o .libs/libcsds_la-csds_parameters.o .libs/libcsds_la-csds_reader_generate_index.o .libs/libcsds_la-csds_cosmology.o .libs/libcsds_la-csds_fields.o .libs/libcsds_la-csds_hashmap.o .libs/libcsds_la-csds_clocks.o .libs/libcsds_la-csds_parser.o .libs/libcsds_la-csds_part_type.o -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -fopenmp -Wl,-soname -Wl,libcsds.so.0 -o .libs/libcsds.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcsds.so.0" && ln -s "libcsds.so.0.0.0" "libcsds.so.0") libtool: link: (cd ".libs" && rm -f "libcsds.so" && ln -s "libcsds.so.0.0.0" "libcsds.so") libtool: link: ar cru .libs/libcsds.a libcsds_la-csds_header.o libcsds_la-csds_loader_io.o libcsds_la-csds_time.o libcsds_la-csds_tools.o libcsds_la-csds_reader.o libcsds_la-csds_logfile.o libcsds_la-csds_index.o libcsds_la-quick_sort.o libcsds_la-csds_parameters.o libcsds_la-csds_reader_generate_index.o libcsds_la-csds_cosmology.o libcsds_la-csds_fields.o libcsds_la-csds_hashmap.o libcsds_la-csds_clocks.o libcsds_la-csds_parser.o libcsds_la-csds_part_type.o libtool: link: ranlib .libs/libcsds.a libtool: link: ( cd ".libs" && rm -f "libcsds.la" && ln -s "../libcsds.la" "libcsds.la" ) make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making all in tests make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making check in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Circular csds_version.h <- csds_version.h dependency dropped. make check-am make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making check in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' depbase=`echo testLogfileHeader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testLogfileHeader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileHeader.o testLogfileHeader.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testLogfileReader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testLogfileReader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileReader.o testLogfileReader.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileReader testLogfileReader.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileReader testLogfileReader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testTimeArray.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testTimeArray.o -MD -MP -MF $depbase.Tpo -c -o testTimeArray.o testTimeArray.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testTimeArray testTimeArray.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testTimeArray testTimeArray.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testQuickSort.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testQuickSort.o -MD -MP -MF $depbase.Tpo -c -o testQuickSort.o testQuickSort.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testQuickSort testQuickSort.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testQuickSort testQuickSort.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testVirtualReality.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testVirtualReality.o -MD -MP -MF $depbase.Tpo -c -o testVirtualReality.o testVirtualReality.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testVirtualReality testVirtualReality.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testVirtualReality testVirtualReality.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testHashmap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testHashmap.o -MD -MP -MF $depbase.Tpo -c -o testHashmap.o testHashmap.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testHashmap testHashmap.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testHashmap testHashmap.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make check-TESTS make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' PASS: testLogfileHeader PASS: testLogfileReader PASS: testTimeArray PASS: testQuickSort PASS: testVirtualReality PASS: testHashmap make[4]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' ============================================================================ Testsuite summary for CSDS 1.5 ============================================================================ # TOTAL: 6 # PASS: 6 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making clean in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' test -z "libcsds.la libcsds_writer.la" || rm -f libcsds.la libcsds_writer.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making clean in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' rm -f testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap rm -rf .libs _libs rm -f *.o test -z "testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log" || rm -f testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log test -z "testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs" || rm -f testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' [Pipeline] updateGitlabCommitStatus [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Python) [Pipeline] updateGitlabCommitStatus [Pipeline] sh Removing Makefile Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing compile Removing config.guess Removing config.h Removing config.h.in Removing config.log Removing config.status Removing config.sub Removing configure Removing depcomp Removing install-sh Removing libtool Removing ltmain.sh Removing m4/libtool.m4 Removing m4/ltoptions.m4 Removing m4/ltsugar.m4 Removing m4/ltversion.m4 Removing m4/lt~obsolete.m4 Removing missing Removing src/.deps/ Removing src/Makefile Removing src/Makefile.in Removing src/csds_version.h Removing stamp-h1 Removing test-driver Removing tests/.deps/ Removing tests/Makefile Removing tests/Makefile.in Removing tests/testHashmap.bin Removing tests/test_header_0000.dump Removing tests/test_reader_0000.dump Removing tests/test_reader_0000_0000.index Removing tests/test_reader_0000_0001.index Removing tests/test_reader_0000_0002.index Removing tests/test_reader_0000_0003.index Removing tests/test_reader_0000_0004.index Removing tests/testvr_0000.dump Removing tests/testvr_0000_0000.index Removing tests/testvr_0000_0001.index Removing tests/testvr_0000_0002.index Removing tests/testvr_0000_0003.index Removing tests/testvr_0000_0004.index libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:64: installing './compile' configure.ac:85: installing './config.guess' configure.ac:85: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable debugging... no checking for gcc... /cosma/local/gcc/7.3.0/bin/gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /cosma/local/gcc/7.3.0/bin/gcc accepts -g... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of /cosma/local/gcc/7.3.0/bin/gcc... gcc3 checking whether /cosma/local/gcc/7.3.0/bin/gcc and cc understand -c and -o together... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to support OpenMP... -fopenmp checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 7.3.0 checking for C/C++ restrict keyword... __restrict checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /cosma/local/gcc/7.3.0/bin/gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... 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(cached) yes checking for sqrt in -lm... yes checking for a Python interpreter with version >= 3... python3 checking for python3... /cosma/local/Python/3.8.7-cosma8/bin/python3 checking for python3 version... 3.8 checking for python3 platform... linux checking for python3 script directory... ${prefix}/lib/python3.8/site-packages checking for python3 extension module directory... ${exec_prefix}/lib/python3.8/site-packages checking for python3.8-config... /cosma/local/Python/3.8.7-cosma8/bin/python3.8-config checking python include flags... checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking c_asm.h usability... no checking c_asm.h presence... no checking for c_asm.h... no checking intrinsics.h usability... no checking intrinsics.h presence... no checking for intrinsics.h... no checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking whether C compiler accepts -Wstrict-prototypes... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ------- Summary -------- CSDS v.1.5 Compiler : /cosma/local/gcc/7.3.0/bin/gcc - vendor : gnu - version : 7.3.0 - flags : -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -fopenmp OpenMP enabled : yes Debugging checks : no Python enabled : yes ------------------------ make all-recursive make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making all in src make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. sed -e "s,@major_version\@,1," \ -e "s,@minor_version\@,5," csds_version.h.in > csds_version.h make all-am make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c -o 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-I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c -o libcsds_la-csds_part_type.lo `test -f 'csds_part_type.c' || echo './'`csds_part_type.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.c -fPIC -DPIC -o .libs/libcsds_la-csds_part_type.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.c -o libcsds_la-csds_part_type.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_part_type.Tpo .deps/libcsds_la-csds_part_type.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_python_wrapper.lo -MD -MP -MF .deps/libcsds_la-csds_python_wrapper.Tpo -c -o libcsds_la-csds_python_wrapper.lo `test -f 'csds_python_wrapper.c' || echo './'`csds_python_wrapper.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_python_wrapper.lo -MD -MP -MF .deps/libcsds_la-csds_python_wrapper.Tpo -c csds_python_wrapper.c -fPIC -DPIC -o .libs/libcsds_la-csds_python_wrapper.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c csds_parser.c -o libcsds_la-csds_parser.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_python_wrapper.lo -MD -MP -MF .deps/libcsds_la-csds_python_wrapper.Tpo -c csds_python_wrapper.c -o libcsds_la-csds_python_wrapper.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_parser.Tpo .deps/libcsds_la-csds_parser.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c -o libcsds_writer_la-csds_logfile_writer.lo `test -f 'csds_logfile_writer.c' || echo './'`csds_logfile_writer.c make[3]: Circular csds_version.h <- csds_version.h dependency dropped. libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.c -fPIC -DPIC -o .libs/libcsds_writer_la-csds_logfile_writer.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.c -o libcsds_writer_la-csds_logfile_writer.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_python_wrapper.Tpo .deps/libcsds_la-csds_python_wrapper.Plo /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o libcsds.la -rpath /usr/local/lib libcsds_la-csds_header.lo libcsds_la-csds_loader_io.lo libcsds_la-csds_time.lo libcsds_la-csds_tools.lo libcsds_la-csds_reader.lo libcsds_la-csds_logfile.lo libcsds_la-csds_index.lo libcsds_la-quick_sort.lo libcsds_la-csds_parameters.lo libcsds_la-csds_reader_generate_index.lo libcsds_la-csds_cosmology.lo libcsds_la-csds_fields.lo libcsds_la-csds_hashmap.lo libcsds_la-csds_clocks.lo libcsds_la-csds_parser.lo libcsds_la-csds_part_type.lo libcsds_la-csds_python_wrapper.lo -lm mv -f .deps/libcsds_writer_la-csds_logfile_writer.Tpo .deps/libcsds_writer_la-csds_logfile_writer.Plo /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o libcsds_writer.la -rpath /usr/local/lib libcsds_writer_la-csds_logfile_writer.lo -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -shared -fPIC -DPIC .libs/libcsds_la-csds_header.o .libs/libcsds_la-csds_loader_io.o .libs/libcsds_la-csds_time.o .libs/libcsds_la-csds_tools.o .libs/libcsds_la-csds_reader.o .libs/libcsds_la-csds_logfile.o .libs/libcsds_la-csds_index.o .libs/libcsds_la-quick_sort.o .libs/libcsds_la-csds_parameters.o .libs/libcsds_la-csds_reader_generate_index.o .libs/libcsds_la-csds_cosmology.o .libs/libcsds_la-csds_fields.o .libs/libcsds_la-csds_hashmap.o .libs/libcsds_la-csds_clocks.o .libs/libcsds_la-csds_parser.o .libs/libcsds_la-csds_part_type.o .libs/libcsds_la-csds_python_wrapper.o -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -fopenmp -Wl,-soname -Wl,libcsds.so.0 -o .libs/libcsds.so.0.0.0 libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -shared -fPIC -DPIC .libs/libcsds_writer_la-csds_logfile_writer.o -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -fopenmp -Wl,-soname -Wl,libcsds_writer.so.0 -o .libs/libcsds_writer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcsds.so.0" && ln -s "libcsds.so.0.0.0" "libcsds.so.0") libtool: link: (cd ".libs" && rm -f "libcsds.so" && ln -s "libcsds.so.0.0.0" "libcsds.so") libtool: link: ar cru .libs/libcsds.a libcsds_la-csds_header.o libcsds_la-csds_loader_io.o libcsds_la-csds_time.o libcsds_la-csds_tools.o libcsds_la-csds_reader.o libcsds_la-csds_logfile.o libcsds_la-csds_index.o libcsds_la-quick_sort.o libcsds_la-csds_parameters.o libcsds_la-csds_reader_generate_index.o libcsds_la-csds_cosmology.o libcsds_la-csds_fields.o libcsds_la-csds_hashmap.o libcsds_la-csds_clocks.o libcsds_la-csds_parser.o libcsds_la-csds_part_type.o libcsds_la-csds_python_wrapper.o libtool: link: ranlib .libs/libcsds.a libtool: link: (cd ".libs" && rm -f "libcsds_writer.so.0" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so.0") libtool: link: (cd ".libs" && rm -f "libcsds_writer.so" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so") libtool: link: ( cd ".libs" && rm -f "libcsds.la" && ln -s "../libcsds.la" "libcsds.la" ) libtool: link: ar cru .libs/libcsds_writer.a libcsds_writer_la-csds_logfile_writer.o libtool: link: ranlib .libs/libcsds_writer.a libtool: link: ( cd ".libs" && rm -f "libcsds_writer.la" && ln -s "../libcsds_writer.la" "libcsds_writer.la" ) make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making all in tests make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making check in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Circular csds_version.h <- csds_version.h dependency dropped. make check-am make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making check in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' depbase=`echo testLogfileHeader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testLogfileHeader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileHeader.o testLogfileHeader.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lm -lm -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testLogfileReader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testLogfileReader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileReader.o testLogfileReader.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lm -lm -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileReader testLogfileReader.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileReader testLogfileReader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testTimeArray.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testTimeArray.o -MD -MP -MF $depbase.Tpo -c -o testTimeArray.o testTimeArray.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lm -lm -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testTimeArray testTimeArray.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testTimeArray testTimeArray.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testQuickSort.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testQuickSort.o -MD -MP -MF $depbase.Tpo -c -o testQuickSort.o testQuickSort.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lm -lm -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testQuickSort testQuickSort.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testQuickSort testQuickSort.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testVirtualReality.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testVirtualReality.o -MD -MP -MF $depbase.Tpo -c -o testVirtualReality.o testVirtualReality.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lm -lm -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testVirtualReality testVirtualReality.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testVirtualReality testVirtualReality.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testHashmap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testHashmap.o -MD -MP -MF $depbase.Tpo -c -o testHashmap.o testHashmap.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -lm -lm -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testHashmap testHashmap.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I/cosma/local/Python/3.8.7-cosma8/include/python3.8 -I../src -Wno-missing-field-initializers -Wno-cast-function-type -Wno-unused-function -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testHashmap testHashmap.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/Python/3.8.7-cosma8/lib/python3.8/config-3.8-x86_64-linux-gnu -L/cosma/local/Python/3.8.7-cosma8/lib -lpython3.8 -lcrypt -lpthread -ldl -lutil -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make check-TESTS make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' PASS: testLogfileHeader PASS: testLogfileReader PASS: testTimeArray PASS: testQuickSort PASS: testVirtualReality PASS: testHashmap make[4]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' ============================================================================ Testsuite summary for CSDS 1.5 ============================================================================ # TOTAL: 6 # PASS: 6 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making clean in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' test -z "libcsds.la libcsds_writer.la" || rm -f libcsds.la libcsds_writer.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making clean in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' rm -f testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap rm -rf .libs _libs rm -f *.o test -z "testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log" || rm -f testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log test -z "testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs" || rm -f testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' [Pipeline] updateGitlabCommitStatus [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (No OpenMP) [Pipeline] updateGitlabCommitStatus [Pipeline] sh Removing Makefile Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing compile Removing config.guess Removing config.h Removing config.h.in Removing config.log Removing config.status Removing config.sub Removing configure Removing depcomp Removing install-sh Removing libtool Removing ltmain.sh Removing m4/libtool.m4 Removing m4/ltoptions.m4 Removing m4/ltsugar.m4 Removing m4/ltversion.m4 Removing m4/lt~obsolete.m4 Removing missing Removing src/.deps/ Removing src/Makefile Removing src/Makefile.in Removing src/csds_version.h Removing stamp-h1 Removing test-driver Removing tests/.deps/ Removing tests/Makefile Removing tests/Makefile.in Removing tests/testHashmap.bin Removing tests/test_header_0000.dump Removing tests/test_reader_0000.dump Removing tests/test_reader_0000_0000.index Removing tests/test_reader_0000_0001.index Removing tests/test_reader_0000_0002.index Removing tests/test_reader_0000_0003.index Removing tests/test_reader_0000_0004.index Removing tests/testvr_0000.dump Removing tests/testvr_0000_0000.index Removing tests/testvr_0000_0001.index Removing tests/testvr_0000_0002.index Removing tests/testvr_0000_0003.index Removing tests/testvr_0000_0004.index libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:64: installing './compile' configure.ac:85: installing './config.guess' configure.ac:85: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable debugging... no checking for gcc... /cosma/local/gcc/7.3.0/bin/gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /cosma/local/gcc/7.3.0/bin/gcc accepts -g... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of /cosma/local/gcc/7.3.0/bin/gcc... gcc3 checking whether /cosma/local/gcc/7.3.0/bin/gcc and cc understand -c and -o together... yes checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 7.3.0 checking for C/C++ restrict keyword... __restrict checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /cosma/local/gcc/7.3.0/bin/gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /cosma/local/gcc/7.3.0/bin/gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... /cosma/local/gcc/7.3.0/bin/gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /cosma/local/gcc/7.3.0/bin/gcc supports -fno-rtti -fno-exceptions... no checking for /cosma/local/gcc/7.3.0/bin/gcc option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/7.3.0/bin/gcc PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/7.3.0/bin/gcc static flag -static works... no checking if /cosma/local/gcc/7.3.0/bin/gcc supports -c -o file.o... yes checking if /cosma/local/gcc/7.3.0/bin/gcc supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/7.3.0/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to accept ISO C99... none needed checking for inline... inline checking whether make sets $(MAKE)... (cached) yes checking for ANSI C header files... (cached) yes checking for sqrt in -lm... yes checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking c_asm.h usability... no checking c_asm.h presence... no checking for c_asm.h... no checking intrinsics.h usability... no checking intrinsics.h presence... no checking for intrinsics.h... no checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking whether C compiler accepts -Wstrict-prototypes... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ------- Summary -------- CSDS v.1.5 Compiler : /cosma/local/gcc/7.3.0/bin/gcc - vendor : gnu - version : 7.3.0 - flags : -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes OpenMP enabled : no Debugging checks : no Python enabled : no ------------------------ make all-recursive make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making all in src make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. sed -e "s,@major_version\@,1," \ -e "s,@minor_version\@,5," csds_version.h.in > csds_version.h make all-am make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c -o libcsds_la-csds_header.lo `test -f 'csds_header.c' || echo './'`csds_header.c /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c -o libcsds_la-csds_loader_io.lo `test -f 'csds_loader_io.c' || echo './'`csds_loader_io.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. 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-Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c csds_tools.c -fPIC -DPIC -o .libs/libcsds_la-csds_tools.o mv -f .deps/libcsds_la-csds_time.Tpo .deps/libcsds_la-csds_time.Plo libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c csds_tools.c -o libcsds_la-csds_tools.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror 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libcsds_la-csds_cosmology.lo -MD -MP -MF .deps/libcsds_la-csds_cosmology.Tpo -c csds_cosmology.c -fPIC -DPIC -o .libs/libcsds_la-csds_cosmology.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_reader_generate_index.lo -MD -MP -MF .deps/libcsds_la-csds_reader_generate_index.Tpo -c csds_reader_generate_index.c -o libcsds_la-csds_reader_generate_index.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_cosmology.lo -MD -MP -MF .deps/libcsds_la-csds_cosmology.Tpo -c csds_cosmology.c -o libcsds_la-csds_cosmology.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_cosmology.Tpo .deps/libcsds_la-csds_cosmology.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_fields.lo -MD -MP -MF .deps/libcsds_la-csds_fields.Tpo -c -o libcsds_la-csds_fields.lo `test -f 'csds_fields.c' || echo './'`csds_fields.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_fields.lo -MD -MP -MF .deps/libcsds_la-csds_fields.Tpo -c csds_fields.c -fPIC -DPIC -o .libs/libcsds_la-csds_fields.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_fields.lo -MD -MP -MF .deps/libcsds_la-csds_fields.Tpo -c csds_fields.c -o libcsds_la-csds_fields.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_reader_generate_index.Tpo .deps/libcsds_la-csds_reader_generate_index.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_hashmap.lo -MD -MP -MF .deps/libcsds_la-csds_hashmap.Tpo -c -o libcsds_la-csds_hashmap.lo `test -f 'csds_hashmap.c' || echo './'`csds_hashmap.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_hashmap.lo -MD -MP -MF .deps/libcsds_la-csds_hashmap.Tpo -c csds_hashmap.c -fPIC -DPIC -o .libs/libcsds_la-csds_hashmap.o mv -f .deps/libcsds_la-csds_fields.Tpo .deps/libcsds_la-csds_fields.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_clocks.lo -MD -MP -MF .deps/libcsds_la-csds_clocks.Tpo -c -o libcsds_la-csds_clocks.lo `test -f 'csds_clocks.c' || echo './'`csds_clocks.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_clocks.lo -MD -MP -MF .deps/libcsds_la-csds_clocks.Tpo -c csds_clocks.c -fPIC -DPIC -o .libs/libcsds_la-csds_clocks.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_hashmap.lo -MD -MP -MF .deps/libcsds_la-csds_hashmap.Tpo -c csds_hashmap.c -o libcsds_la-csds_hashmap.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_clocks.lo -MD -MP -MF .deps/libcsds_la-csds_clocks.Tpo -c csds_clocks.c -o libcsds_la-csds_clocks.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_clocks.Tpo .deps/libcsds_la-csds_clocks.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c -o libcsds_la-csds_parser.lo `test -f 'csds_parser.c' || echo './'`csds_parser.c mv -f .deps/libcsds_la-csds_hashmap.Tpo .deps/libcsds_la-csds_hashmap.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c -o libcsds_la-csds_part_type.lo `test -f 'csds_part_type.c' || echo './'`csds_part_type.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c csds_parser.c -fPIC -DPIC -o .libs/libcsds_la-csds_parser.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.c -fPIC -DPIC -o .libs/libcsds_la-csds_part_type.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.c -o libcsds_la-csds_part_type.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_part_type.Tpo .deps/libcsds_la-csds_part_type.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c -o libcsds_writer_la-csds_logfile_writer.lo `test -f 'csds_logfile_writer.c' || echo './'`csds_logfile_writer.c make[3]: Circular csds_version.h <- csds_version.h dependency dropped. libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.c -fPIC -DPIC -o .libs/libcsds_writer_la-csds_logfile_writer.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.c -o libcsds_writer_la-csds_logfile_writer.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c csds_parser.c -o libcsds_la-csds_parser.o >/dev/null 2>&1 mv -f .deps/libcsds_writer_la-csds_logfile_writer.Tpo .deps/libcsds_writer_la-csds_logfile_writer.Plo /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o libcsds_writer.la -rpath /usr/local/lib libcsds_writer_la-csds_logfile_writer.lo -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -shared -fPIC -DPIC .libs/libcsds_writer_la-csds_logfile_writer.o -L/cosma/local/gcc/7.3.0/lib64/ -lm -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -Wl,-soname -Wl,libcsds_writer.so.0 -o .libs/libcsds_writer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcsds_writer.so.0" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so.0") libtool: link: (cd ".libs" && rm -f "libcsds_writer.so" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so") libtool: link: ar cru .libs/libcsds_writer.a libcsds_writer_la-csds_logfile_writer.o libtool: link: ranlib .libs/libcsds_writer.a libtool: link: ( cd ".libs" && rm -f "libcsds_writer.la" && ln -s "../libcsds_writer.la" "libcsds_writer.la" ) mv -f .deps/libcsds_la-csds_parser.Tpo .deps/libcsds_la-csds_parser.Plo /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o libcsds.la -rpath /usr/local/lib libcsds_la-csds_header.lo libcsds_la-csds_loader_io.lo libcsds_la-csds_time.lo libcsds_la-csds_tools.lo libcsds_la-csds_reader.lo libcsds_la-csds_logfile.lo libcsds_la-csds_index.lo libcsds_la-quick_sort.lo libcsds_la-csds_parameters.lo libcsds_la-csds_reader_generate_index.lo libcsds_la-csds_cosmology.lo libcsds_la-csds_fields.lo libcsds_la-csds_hashmap.lo libcsds_la-csds_clocks.lo libcsds_la-csds_parser.lo libcsds_la-csds_part_type.lo -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -shared -fPIC -DPIC .libs/libcsds_la-csds_header.o .libs/libcsds_la-csds_loader_io.o .libs/libcsds_la-csds_time.o .libs/libcsds_la-csds_tools.o .libs/libcsds_la-csds_reader.o .libs/libcsds_la-csds_logfile.o .libs/libcsds_la-csds_index.o .libs/libcsds_la-quick_sort.o .libs/libcsds_la-csds_parameters.o .libs/libcsds_la-csds_reader_generate_index.o .libs/libcsds_la-csds_cosmology.o .libs/libcsds_la-csds_fields.o .libs/libcsds_la-csds_hashmap.o .libs/libcsds_la-csds_clocks.o .libs/libcsds_la-csds_parser.o .libs/libcsds_la-csds_part_type.o -L/cosma/local/gcc/7.3.0/lib64/ -lm -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -Wl,-soname -Wl,libcsds.so.0 -o .libs/libcsds.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcsds.so.0" && ln -s "libcsds.so.0.0.0" "libcsds.so.0") libtool: link: (cd ".libs" && rm -f "libcsds.so" && ln -s "libcsds.so.0.0.0" "libcsds.so") libtool: link: ar cru .libs/libcsds.a libcsds_la-csds_header.o libcsds_la-csds_loader_io.o libcsds_la-csds_time.o libcsds_la-csds_tools.o libcsds_la-csds_reader.o libcsds_la-csds_logfile.o libcsds_la-csds_index.o libcsds_la-quick_sort.o libcsds_la-csds_parameters.o libcsds_la-csds_reader_generate_index.o libcsds_la-csds_cosmology.o libcsds_la-csds_fields.o libcsds_la-csds_hashmap.o libcsds_la-csds_clocks.o libcsds_la-csds_parser.o libcsds_la-csds_part_type.o libtool: link: ranlib .libs/libcsds.a libtool: link: ( cd ".libs" && rm -f "libcsds.la" && ln -s "../libcsds.la" "libcsds.la" ) make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making all in tests make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making check in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Circular csds_version.h <- csds_version.h dependency dropped. make check-am make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making check in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' depbase=`echo testLogfileHeader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testLogfileHeader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileHeader.o testLogfileHeader.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm depbase=`echo testLogfileReader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testLogfileReader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileReader.o testLogfileReader.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileReader testLogfileReader.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileReader testLogfileReader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm depbase=`echo testTimeArray.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testTimeArray.o -MD -MP -MF $depbase.Tpo -c -o testTimeArray.o testTimeArray.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testTimeArray testTimeArray.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testTimeArray testTimeArray.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm depbase=`echo testQuickSort.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testQuickSort.o -MD -MP -MF $depbase.Tpo -c -o testQuickSort.o testQuickSort.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testQuickSort testQuickSort.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testQuickSort testQuickSort.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm depbase=`echo testVirtualReality.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testVirtualReality.o -MD -MP -MF $depbase.Tpo -c -o testVirtualReality.o testVirtualReality.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testVirtualReality testVirtualReality.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testVirtualReality testVirtualReality.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm depbase=`echo testHashmap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testHashmap.o -MD -MP -MF $depbase.Tpo -c -o testHashmap.o testHashmap.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testHashmap testHashmap.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -I../src -Wno-unknown-pragmas -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testHashmap testHashmap.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make check-TESTS make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' PASS: testLogfileHeader PASS: testLogfileReader PASS: testTimeArray PASS: testQuickSort PASS: testVirtualReality PASS: testHashmap make[4]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' ============================================================================ Testsuite summary for CSDS 1.5 ============================================================================ # TOTAL: 6 # PASS: 6 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making clean in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' test -z "libcsds.la libcsds_writer.la" || rm -f libcsds.la libcsds_writer.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making clean in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' rm -f testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap rm -rf .libs _libs rm -f *.o test -z "testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log" || rm -f testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log test -z "testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs" || rm -f testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' [Pipeline] updateGitlabCommitStatus [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Debugging) [Pipeline] updateGitlabCommitStatus [Pipeline] sh Removing Makefile Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing compile Removing config.guess Removing config.h Removing config.h.in Removing config.log Removing config.status Removing config.sub Removing configure Removing depcomp Removing install-sh Removing libtool Removing ltmain.sh Removing m4/libtool.m4 Removing m4/ltoptions.m4 Removing m4/ltsugar.m4 Removing m4/ltversion.m4 Removing m4/lt~obsolete.m4 Removing missing Removing src/.deps/ Removing src/Makefile Removing src/Makefile.in Removing src/csds_version.h Removing stamp-h1 Removing test-driver Removing tests/.deps/ Removing tests/Makefile Removing tests/Makefile.in Removing tests/testHashmap.bin Removing tests/test_header_0000.dump Removing tests/test_reader_0000.dump Removing tests/test_reader_0000_0000.index Removing tests/test_reader_0000_0001.index Removing tests/test_reader_0000_0002.index Removing tests/test_reader_0000_0003.index Removing tests/test_reader_0000_0004.index Removing tests/testvr_0000.dump Removing tests/testvr_0000_0000.index Removing tests/testvr_0000_0001.index Removing tests/testvr_0000_0002.index Removing tests/testvr_0000_0003.index Removing tests/testvr_0000_0004.index libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:64: installing './compile' configure.ac:85: installing './config.guess' configure.ac:85: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable debugging... no checking for gcc... /cosma/local/gcc/7.3.0/bin/gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /cosma/local/gcc/7.3.0/bin/gcc accepts -g... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of /cosma/local/gcc/7.3.0/bin/gcc... gcc3 checking whether /cosma/local/gcc/7.3.0/bin/gcc and cc understand -c and -o together... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to support OpenMP... -fopenmp checking for C compiler vendor... gnu checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 7.3.0 checking for C/C++ restrict keyword... __restrict checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /cosma/local/gcc/7.3.0/bin/gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /cosma/local/gcc/7.3.0/bin/gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... /cosma/local/gcc/7.3.0/bin/gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /cosma/local/gcc/7.3.0/bin/gcc supports -fno-rtti -fno-exceptions... no checking for /cosma/local/gcc/7.3.0/bin/gcc option to produce PIC... -fPIC -DPIC checking if /cosma/local/gcc/7.3.0/bin/gcc PIC flag -fPIC -DPIC works... yes checking if /cosma/local/gcc/7.3.0/bin/gcc static flag -static works... no checking if /cosma/local/gcc/7.3.0/bin/gcc supports -c -o file.o... yes checking if /cosma/local/gcc/7.3.0/bin/gcc supports -c -o file.o... (cached) yes checking whether the /cosma/local/gcc/7.3.0/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /cosma/local/gcc/7.3.0/bin/gcc option to accept ISO C99... none needed checking for inline... inline checking whether make sets $(MAKE)... (cached) yes checking for ANSI C header files... (cached) yes checking for sqrt in -lm... yes checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking c_asm.h usability... no checking c_asm.h presence... no checking for c_asm.h... no checking intrinsics.h usability... no checking intrinsics.h presence... no checking for intrinsics.h... no checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking whether C compiler accepts -Wstrict-prototypes... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ------- Summary -------- CSDS v.1.5 Compiler : /cosma/local/gcc/7.3.0/bin/gcc - vendor : gnu - version : 7.3.0 - flags : -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -fopenmp OpenMP enabled : yes Debugging checks : yes Python enabled : no ------------------------ make all-recursive make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making all in src make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. sed -e "s,@major_version\@,1," \ -e "s,@minor_version\@,5," csds_version.h.in > csds_version.h make all-am make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c -o libcsds_la-csds_header.lo `test -f 'csds_header.c' || echo './'`csds_header.c /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c -o libcsds_la-csds_loader_io.lo `test -f 'csds_loader_io.c' || echo './'`csds_loader_io.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.c -fPIC -DPIC -o .libs/libcsds_la-csds_header.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c csds_loader_io.c -fPIC -DPIC -o .libs/libcsds_la-csds_loader_io.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ 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-DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_clocks.lo -MD -MP -MF .deps/libcsds_la-csds_clocks.Tpo -c csds_clocks.c -fPIC -DPIC -o .libs/libcsds_la-csds_clocks.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_clocks.lo -MD -MP -MF .deps/libcsds_la-csds_clocks.Tpo -c csds_clocks.c -o libcsds_la-csds_clocks.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_hashmap.lo -MD -MP -MF .deps/libcsds_la-csds_hashmap.Tpo -c csds_hashmap.c -o libcsds_la-csds_hashmap.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_clocks.Tpo .deps/libcsds_la-csds_clocks.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c -o libcsds_la-csds_parser.lo `test -f 'csds_parser.c' || echo './'`csds_parser.c mv -f .deps/libcsds_la-csds_hashmap.Tpo .deps/libcsds_la-csds_hashmap.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c -o libcsds_la-csds_part_type.lo `test -f 'csds_part_type.c' || echo './'`csds_part_type.c libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c csds_parser.c -fPIC -DPIC -o .libs/libcsds_la-csds_parser.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.c -fPIC -DPIC -o .libs/libcsds_la-csds_part_type.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_part_type.lo -MD -MP -MF .deps/libcsds_la-csds_part_type.Tpo -c csds_part_type.c -o libcsds_la-csds_part_type.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_part_type.Tpo .deps/libcsds_la-csds_part_type.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c -o libcsds_writer_la-csds_logfile_writer.lo `test -f 'csds_logfile_writer.c' || echo './'`csds_logfile_writer.c make[3]: Circular csds_version.h <- csds_version.h dependency dropped. libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.c -fPIC -DPIC -o .libs/libcsds_writer_la-csds_logfile_writer.o libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_writer_la-csds_logfile_writer.lo -MD -MP -MF .deps/libcsds_writer_la-csds_logfile_writer.Tpo -c csds_logfile_writer.c -o libcsds_writer_la-csds_logfile_writer.o >/dev/null 2>&1 libtool: compile: /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_parser.lo -MD -MP -MF .deps/libcsds_la-csds_parser.Tpo -c csds_parser.c -o libcsds_la-csds_parser.o >/dev/null 2>&1 mv -f .deps/libcsds_writer_la-csds_logfile_writer.Tpo .deps/libcsds_writer_la-csds_logfile_writer.Plo /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o libcsds_writer.la -rpath /usr/local/lib libcsds_writer_la-csds_logfile_writer.lo -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -shared -fPIC -DPIC .libs/libcsds_writer_la-csds_logfile_writer.o -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -fopenmp -Wl,-soname -Wl,libcsds_writer.so.0 -o .libs/libcsds_writer.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcsds_writer.so.0" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so.0") libtool: link: (cd ".libs" && rm -f "libcsds_writer.so" && ln -s "libcsds_writer.so.0.0.0" "libcsds_writer.so") libtool: link: ar cru .libs/libcsds_writer.a libcsds_writer_la-csds_logfile_writer.o libtool: link: ranlib .libs/libcsds_writer.a libtool: link: ( cd ".libs" && rm -f "libcsds_writer.la" && ln -s "../libcsds_writer.la" "libcsds_writer.la" ) mv -f .deps/libcsds_la-csds_parser.Tpo .deps/libcsds_la-csds_parser.Plo /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o libcsds.la -rpath /usr/local/lib libcsds_la-csds_header.lo libcsds_la-csds_loader_io.lo libcsds_la-csds_time.lo libcsds_la-csds_tools.lo libcsds_la-csds_reader.lo libcsds_la-csds_logfile.lo libcsds_la-csds_index.lo libcsds_la-quick_sort.lo libcsds_la-csds_parameters.lo libcsds_la-csds_reader_generate_index.lo libcsds_la-csds_cosmology.lo libcsds_la-csds_fields.lo libcsds_la-csds_hashmap.lo libcsds_la-csds_clocks.lo libcsds_la-csds_parser.lo libcsds_la-csds_part_type.lo -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -shared -fPIC -DPIC .libs/libcsds_la-csds_header.o .libs/libcsds_la-csds_loader_io.o .libs/libcsds_la-csds_time.o .libs/libcsds_la-csds_tools.o .libs/libcsds_la-csds_reader.o .libs/libcsds_la-csds_logfile.o .libs/libcsds_la-csds_index.o .libs/libcsds_la-quick_sort.o .libs/libcsds_la-csds_parameters.o .libs/libcsds_la-csds_reader_generate_index.o .libs/libcsds_la-csds_cosmology.o .libs/libcsds_la-csds_fields.o .libs/libcsds_la-csds_hashmap.o .libs/libcsds_la-csds_clocks.o .libs/libcsds_la-csds_parser.o .libs/libcsds_la-csds_part_type.o -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -fopenmp -Wl,-soname -Wl,libcsds.so.0 -o .libs/libcsds.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libcsds.so.0" && ln -s "libcsds.so.0.0.0" "libcsds.so.0") libtool: link: (cd ".libs" && rm -f "libcsds.so" && ln -s "libcsds.so.0.0.0" "libcsds.so") libtool: link: ar cru .libs/libcsds.a libcsds_la-csds_header.o libcsds_la-csds_loader_io.o libcsds_la-csds_time.o libcsds_la-csds_tools.o libcsds_la-csds_reader.o libcsds_la-csds_logfile.o libcsds_la-csds_index.o libcsds_la-quick_sort.o libcsds_la-csds_parameters.o libcsds_la-csds_reader_generate_index.o libcsds_la-csds_cosmology.o libcsds_la-csds_fields.o libcsds_la-csds_hashmap.o libcsds_la-csds_clocks.o libcsds_la-csds_parser.o libcsds_la-csds_part_type.o libtool: link: ranlib .libs/libcsds.a libtool: link: ( cd ".libs" && rm -f "libcsds.la" && ln -s "../libcsds.la" "libcsds.la" ) make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making all in tests make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making check in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Circular csds_version.h <- csds_version.h dependency dropped. make check-am make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making check in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' depbase=`echo testLogfileHeader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testLogfileHeader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileHeader.o testLogfileHeader.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileHeader testLogfileHeader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testLogfileReader.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testLogfileReader.o -MD -MP -MF $depbase.Tpo -c -o testLogfileReader.o testLogfileReader.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileReader testLogfileReader.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testLogfileReader testLogfileReader.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testTimeArray.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testTimeArray.o -MD -MP -MF $depbase.Tpo -c -o testTimeArray.o testTimeArray.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testTimeArray testTimeArray.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testTimeArray testTimeArray.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testQuickSort.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testQuickSort.o -MD -MP -MF $depbase.Tpo -c -o testQuickSort.o testQuickSort.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testQuickSort testQuickSort.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testQuickSort testQuickSort.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testVirtualReality.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testVirtualReality.o -MD -MP -MF $depbase.Tpo -c -o testVirtualReality.o testVirtualReality.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testVirtualReality testVirtualReality.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testVirtualReality testVirtualReality.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp depbase=`echo testHashmap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ /cosma/local/gcc/7.3.0/bin/gcc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/gcc/7.3.0/include -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -MT testHashmap.o -MD -MP -MF $depbase.Tpo -c -o testHashmap.o testHashmap.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testHashmap testHashmap.o -lm libtool: link: /cosma/local/gcc/7.3.0/bin/gcc -fopenmp -I../src -Wall -Wextra -Wshadow -Werror -Wstrict-prototypes -Wl,-rpath=/cosma/local/gcc/7.3.0/lib64/ -o testHashmap testHashmap.o ../src/.libs/libcsds.a ../src/.libs/libcsds_writer.a -L/cosma/local/gcc/7.3.0/lib64/ -lm -fopenmp make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make check-TESTS make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' PASS: testLogfileHeader PASS: testLogfileReader PASS: testTimeArray PASS: testQuickSort PASS: testVirtualReality PASS: testHashmap make[4]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' ============================================================================ Testsuite summary for CSDS 1.5 ============================================================================ # TOTAL: 6 # PASS: 6 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making clean in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' test -z "libcsds.la libcsds_writer.la" || rm -f libcsds.la libcsds_writer.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making clean in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' rm -f testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap rm -rf .libs _libs rm -f *.o test -z "testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log" || rm -f testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log test -z "testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs" || rm -f testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' [Pipeline] updateGitlabCommitStatus [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Intel) [Pipeline] updateGitlabCommitStatus [Pipeline] sh Removing Makefile Removing Makefile.in Removing aclocal.m4 Removing autom4te.cache/ Removing compile Removing config.guess Removing config.h Removing config.h.in Removing config.log Removing config.status Removing config.sub Removing configure Removing depcomp Removing install-sh Removing libtool Removing ltmain.sh Removing m4/libtool.m4 Removing m4/ltoptions.m4 Removing m4/ltsugar.m4 Removing m4/ltversion.m4 Removing m4/lt~obsolete.m4 Removing missing Removing src/.deps/ Removing src/Makefile Removing src/Makefile.in Removing src/csds_version.h Removing stamp-h1 Removing test-driver Removing tests/.deps/ Removing tests/Makefile Removing tests/Makefile.in Removing tests/testHashmap.bin Removing tests/test_header_0000.dump Removing tests/test_reader_0000.dump Removing tests/test_reader_0000_0000.index Removing tests/test_reader_0000_0001.index Removing tests/test_reader_0000_0002.index Removing tests/test_reader_0000_0003.index Removing tests/test_reader_0000_0004.index Removing tests/testvr_0000.dump Removing tests/testvr_0000_0000.index Removing tests/testvr_0000_0001.index Removing tests/testvr_0000_0002.index Removing tests/testvr_0000_0003.index Removing tests/testvr_0000_0004.index libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `.'. libtoolize: linking file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' configure.ac:64: installing './compile' configure.ac:85: installing './config.guess' configure.ac:85: installing './config.sub' configure.ac:50: installing './install-sh' configure.ac:50: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable debugging... no checking for gcc... /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc accepts -g... yes checking for /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc... gcc3 checking whether /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc and cc understand -c and -o together... yes checking for /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc option to support OpenMP... -fopenmp checking for C compiler vendor... intel checking for a sed that does not truncate output... /usr/bin/sed checking for C compiler version... 18.0.0 checking for C/C++ restrict keyword... __restrict checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc supports -fno-rtti -fno-exceptions... yes checking for /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc option to produce PIC... -fPIC -DPIC checking if /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc PIC flag -fPIC -DPIC works... yes checking if /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc static flag -static works... no checking if /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc supports -c -o file.o... yes checking if /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc supports -c -o file.o... (cached) yes checking whether the /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc option to accept ISO C99... none needed checking for inline... inline checking whether make sets $(MAKE)... (cached) yes checking for ANSI C header files... (cached) yes checking for sqrt in -lm... yes checking whether time.h and sys/time.h may both be included... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking c_asm.h usability... no checking c_asm.h presence... no checking for c_asm.h... no checking intrinsics.h usability... no checking intrinsics.h presence... no checking for intrinsics.h... no checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for hrtime_t... no checking for gethrtime... no checking for read_real_time... no checking for time_base_to_time... no checking for clock_gettime... yes checking for mach_absolute_time... no checking for _rtc intrinsic... no checking whether C compiler accepts -Wstrict-prototypes... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ------- Summary -------- CSDS v.1.5 Compiler : /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc - vendor : intel - version : 18.0.0 - flags : -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -fopenmp OpenMP enabled : yes Debugging checks : yes Python enabled : no ------------------------ make all-recursive make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' Making all in src make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. sed -e "s,@major_version\@,1," \ -e "s,@minor_version\@,5," csds_version.h.in > csds_version.h make all-am make[3]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c -o libcsds_la-csds_header.lo `test -f 'csds_header.c' || echo './'`csds_header.c /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c -o libcsds_la-csds_loader_io.lo `test -f 'csds_loader_io.c' || echo './'`csds_loader_io.c libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.c -fPIC -DPIC -o .libs/libcsds_la-csds_header.o libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c csds_loader_io.c -fPIC -DPIC -o .libs/libcsds_la-csds_loader_io.o libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_loader_io.lo -MD -MP -MF .deps/libcsds_la-csds_loader_io.Tpo -c csds_loader_io.c -o libcsds_la-csds_loader_io.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_loader_io.Tpo .deps/libcsds_la-csds_loader_io.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c -o libcsds_la-csds_time.lo `test -f 'csds_time.c' || echo './'`csds_time.c libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c csds_time.c -fPIC -DPIC -o .libs/libcsds_la-csds_time.o libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_header.lo -MD -MP -MF .deps/libcsds_la-csds_header.Tpo -c csds_header.c -o libcsds_la-csds_header.o >/dev/null 2>&1 libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_time.lo -MD -MP -MF .deps/libcsds_la-csds_time.Tpo -c csds_time.c -o libcsds_la-csds_time.o >/dev/null 2>&1 mv -f .deps/libcsds_la-csds_header.Tpo .deps/libcsds_la-csds_header.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c -o libcsds_la-csds_tools.lo `test -f 'csds_tools.c' || echo './'`csds_tools.c libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c csds_tools.c -fPIC -DPIC -o .libs/libcsds_la-csds_tools.o mv -f .deps/libcsds_la-csds_time.Tpo .deps/libcsds_la-csds_time.Plo /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_reader.lo -MD -MP -MF .deps/libcsds_la-csds_reader.Tpo -c -o libcsds_la-csds_reader.lo `test -f 'csds_reader.c' || echo './'`csds_reader.c libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_reader.lo -MD -MP -MF .deps/libcsds_la-csds_reader.Tpo -c csds_reader.c -fPIC -DPIC -o .libs/libcsds_la-csds_reader.o libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_tools.lo -MD -MP -MF .deps/libcsds_la-csds_tools.Tpo -c csds_tools.c -o libcsds_la-csds_tools.o >/dev/null 2>&1 csds_reader.c(651): error #1338: arithmetic on pointer to void or function type output[field] + output_index * current_field->field.size; ^ csds_reader.c(912): error #1338: arithmetic on pointer to void or function type output[field] + ^ compilation aborted for csds_reader.c (code 2) make[3]: *** [libcsds_la-csds_reader.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... mv -f .deps/libcsds_la-csds_tools.Tpo .deps/libcsds_la-csds_tools.Plo make[3]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: *** [all] Error 2 make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' make: *** [all] Error 2 Making check in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: Circular csds_version.h <- csds_version.h dependency dropped. make check-am make[2]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[2]: Circular csds_version.h <- csds_version.h dependency dropped. /bin/sh ../libtool --tag=CC --mode=compile /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_reader.lo -MD -MP -MF .deps/libcsds_la-csds_reader.Tpo -c -o libcsds_la-csds_reader.lo `test -f 'csds_reader.c' || echo './'`csds_reader.c libtool: compile: /cosma/local/Intel/Parallel_Studio_XE_2018/bin/icc -DHAVE_CONFIG_H -I. -I.. -I/cosma/local/Python/3.8.7-cosma8/lib/python3.8/site-packages/numpy/core/include/ -I/cosma/local/Python/3.8.7-cosma8/include/ -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/daal/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/tbb/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/pstl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/mkl/include -I/cosma/local/Intel/Parallel_Studio_XE_2018/compilers_and_libraries_2018.2.199/linux/ipp/include -I/cosma/local/gcc/7.3.0/include -fopenmp -idirafter /usr/include/linux -w2 -Wunused-variable -Wshadow -Werror -Wstrict-prototypes -MT libcsds_la-csds_reader.lo -MD -MP -MF .deps/libcsds_la-csds_reader.Tpo -c csds_reader.c -fPIC -DPIC -o .libs/libcsds_la-csds_reader.o csds_reader.c(651): error #1338: arithmetic on pointer to void or function type output[field] + output_index * current_field->field.size; ^ csds_reader.c(912): error #1338: arithmetic on pointer to void or function type output[field] + ^ compilation aborted for csds_reader.c (code 2) make[2]: *** [libcsds_la-csds_reader.lo] Error 1 make[2]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make[1]: *** [check] Error 2 make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' make: *** [check-recursive] Error 1 Making clean in src make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' test -z "libcsds.la libcsds_writer.la" || rm -f libcsds.la libcsds_writer.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/src' Making clean in tests make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' rm -f testLogfileHeader testLogfileReader testTimeArray testQuickSort testVirtualReality testHashmap rm -rf .libs _libs rm -f *.o test -z "testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log" || rm -f testLogfileHeader.log testLogfileReader.log testTimeArray.log testQuickSort.log testVirtualReality.log testHashmap.log test -z "testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs" || rm -f testLogfileHeader.trs testLogfileReader.trs testTimeArray.trs testQuickSort.trs testVirtualReality.trs testHashmap.trs test -z "test-suite.log" || rm -f test-suite.log rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2/tests' make[1]: Entering directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory `/local/jenkins/jobs/CSDS-Pipeline/workspace@2' [Pipeline] updateGitlabCommitStatus [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS