###############################################################################
# This file is part of SWIFT.
# Copyright (c) 2016 Matthieu Schaller (schaller@strw.leidenuniv.nl)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published
# by the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.
#
##############################################################################

import h5py
from numpy import *

# Generates a swift IC file for the Sedov blast test in a periodic cubic box

# Parameters
gamma = 5.0 / 3.0  # Gas adiabatic index
rho0 = 1.0  # Background density
P0 = 1.0e-6  # Background pressure
E0 = 1.0  # Energy of the explosion
N_inject = 15  # Number of particles in which to inject energy
fileName = "sedov.hdf5"

# ---------------------------------------------------
glass = h5py.File("glassCube_64.hdf5", "r")

# Read particle positions and h from the glass
pos = glass["/PartType0/Coordinates"][:, :]
h = glass["/PartType0/SmoothingLength"][:] * 0.3

numPart = size(h)
vol = 1.0

# Generate extra arrays
v = zeros((numPart, 3))
ids = linspace(1, numPart, numPart)
m = zeros(numPart)
u = zeros(numPart)
r = zeros(numPart)

r = sqrt((pos[:, 0] - 0.5) ** 2 + (pos[:, 1] - 0.5) ** 2 + (pos[:, 2] - 0.5) ** 2)
m[:] = rho0 * vol / numPart
u[:] = P0 / (rho0 * (gamma - 1))

# Make the central particles detonate
index = argsort(r)
u[index[0:N_inject]] = E0 / (N_inject * m[0])

# --------------------------------------------------

# File
file = h5py.File(fileName, "w")

# Header
grp = file.create_group("/Header")
grp.attrs["BoxSize"] = [1.0, 1.0, 1.0]
grp.attrs["NumPart_Total"] = [numPart, 0, 0, 0, 0, 0]
grp.attrs["NumPart_Total_HighWord"] = [0, 0, 0, 0, 0, 0]
grp.attrs["NumPart_ThisFile"] = [numPart, 0, 0, 0, 0, 0]
grp.attrs["Time"] = 0.0
grp.attrs["NumFilesPerSnapshot"] = 1
grp.attrs["MassTable"] = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0]
grp.attrs["Flag_Entropy_ICs"] = 0
grp.attrs["Dimension"] = 3

# Units
grp = file.create_group("/Units")
grp.attrs["Unit length in cgs (U_L)"] = 1.0
grp.attrs["Unit mass in cgs (U_M)"] = 1.0
grp.attrs["Unit time in cgs (U_t)"] = 1.0
grp.attrs["Unit current in cgs (U_I)"] = 1.0
grp.attrs["Unit temperature in cgs (U_T)"] = 1.0

# Particle group
grp = file.create_group("/PartType0")
grp.create_dataset("Coordinates", data=pos, dtype="d")
grp.create_dataset("Velocities", data=v, dtype="f")
grp.create_dataset("Masses", data=m, dtype="f")
grp.create_dataset("SmoothingLength", data=h, dtype="f")
grp.create_dataset("InternalEnergy", data=u, dtype="f")
grp.create_dataset("ParticleIDs", data=ids, dtype="L")

file.close()